data_3FRB
#
_model_server_result.job_id            f2QvRey0vcUaJPu8K4IQtg 
_model_server_result.datetime_utc      '2024-11-25 16:53:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3frb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3FRB 
#
_exptl.entry_id    3FRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FRB 
_cell.length_a            79.173 
_cell.length_b            79.173 
_cell.length_c            108.242 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 224 n n 
PA O2A NAP sing 225 n n 
PA O5B NAP sing 226 n n 
PA O3 NAP sing 227 n n 
O2A HOA2 NAP sing 228 n n 
O5B C5B NAP sing 229 n n 
C5B C4B NAP sing 230 n n 
C5B H51A NAP sing 231 n n 
C5B H52A NAP sing 232 n n 
C4B O4B NAP sing 233 n n 
C4B C3B NAP sing 234 n n 
C4B H4B NAP sing 235 n n 
O4B C1B NAP sing 236 n n 
C3B O3B NAP sing 237 n n 
C3B C2B NAP sing 238 n n 
C3B H3B NAP sing 239 n n 
O3B HO3A NAP sing 240 n n 
C2B O2B NAP sing 241 n n 
C2B C1B NAP sing 242 n n 
C2B H2B NAP sing 243 n n 
O2B P2B NAP sing 244 n n 
C1B N9A NAP sing 245 n n 
C1B H1B NAP sing 246 n n 
N9A C8A NAP sing 247 n y 
N9A C4A NAP sing 248 n y 
C8A N7A NAP doub 249 n y 
C8A H8A NAP sing 250 n n 
N7A C5A NAP sing 251 n y 
C5A C6A NAP sing 252 n y 
C5A C4A NAP doub 253 n y 
C6A N6A NAP sing 254 n n 
C6A N1A NAP doub 255 n y 
N6A H61A NAP sing 256 n n 
N6A H62A NAP sing 257 n n 
N1A C2A NAP sing 258 n y 
C2A N3A NAP doub 259 n y 
C2A H2A NAP sing 260 n n 
N3A C4A NAP sing 261 n y 
O3 PN NAP sing 262 n n 
PN O1N NAP doub 263 n n 
PN O2N NAP sing 264 n n 
PN O5D NAP sing 265 n n 
O5D C5D NAP sing 266 n n 
C5D C4D NAP sing 267 n n 
C5D H51N NAP sing 268 n n 
C5D H52N NAP sing 269 n n 
C4D O4D NAP sing 270 n n 
C4D C3D NAP sing 271 n n 
C4D H4D NAP sing 272 n n 
O4D C1D NAP sing 273 n n 
C3D O3D NAP sing 274 n n 
C3D C2D NAP sing 275 n n 
C3D H3D NAP sing 276 n n 
O3D HO3N NAP sing 277 n n 
C2D O2D NAP sing 278 n n 
C2D C1D NAP sing 279 n n 
C2D H2D NAP sing 280 n n 
O2D HO2N NAP sing 281 n n 
C1D N1N NAP sing 282 n n 
C1D H1D NAP sing 283 n n 
N1N C2N NAP sing 284 n y 
N1N C6N NAP doub 285 n y 
C2N C3N NAP doub 286 n y 
C2N H2N NAP sing 287 n n 
C3N C7N NAP sing 288 n n 
C3N C4N NAP sing 289 n y 
C7N O7N NAP doub 290 n n 
C7N N7N NAP sing 291 n n 
N7N H71N NAP sing 292 n n 
N7N H72N NAP sing 293 n n 
C4N C5N NAP doub 294 n y 
C4N H4N NAP sing 295 n n 
C5N C6N NAP sing 296 n y 
C5N H5N NAP sing 297 n n 
C6N H6N NAP sing 298 n n 
P2B O1X NAP doub 299 n n 
P2B O2X NAP sing 300 n n 
P2B O3X NAP sing 301 n n 
O2X HOP2 NAP sing 302 n n 
O3X HOP3 NAP sing 303 n n 
#
_atom_sites.entry_id                     3FRB 
_atom_sites.fract_transf_matrix[1][1]    0.012631 
_atom_sites.fract_transf_matrix[1][2]    0.007292 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 301 301 NAP NAD . 
C 3 TOP X 1 300 300 TOP TMP . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 7 HOH HOH . 
D 4 HOH X 8 166 8 HOH HOH . 
D 4 HOH X 9 167 9 HOH HOH . 
D 4 HOH X 10 168 10 HOH HOH . 
D 4 HOH X 11 169 11 HOH HOH . 
D 4 HOH X 12 170 12 HOH HOH . 
D 4 HOH X 13 171 13 HOH HOH . 
D 4 HOH X 14 172 14 HOH HOH . 
D 4 HOH X 15 173 15 HOH HOH . 
D 4 HOH X 16 174 16 HOH HOH . 
D 4 HOH X 17 175 17 HOH HOH . 
D 4 HOH X 18 176 19 HOH HOH . 
D 4 HOH X 19 177 20 HOH HOH . 
D 4 HOH X 20 178 21 HOH HOH . 
D 4 HOH X 21 179 22 HOH HOH . 
D 4 HOH X 22 180 23 HOH HOH . 
D 4 HOH X 23 181 24 HOH HOH . 
D 4 HOH X 24 182 25 HOH HOH . 
D 4 HOH X 25 183 26 HOH HOH . 
D 4 HOH X 26 184 27 HOH HOH . 
D 4 HOH X 27 185 28 HOH HOH . 
D 4 HOH X 28 186 29 HOH HOH . 
D 4 HOH X 29 187 30 HOH HOH . 
D 4 HOH X 30 188 31 HOH HOH . 
D 4 HOH X 31 189 32 HOH HOH . 
D 4 HOH X 32 190 33 HOH HOH . 
D 4 HOH X 33 191 34 HOH HOH . 
D 4 HOH X 34 192 35 HOH HOH . 
D 4 HOH X 35 193 36 HOH HOH . 
D 4 HOH X 36 194 37 HOH HOH . 
D 4 HOH X 37 195 38 HOH HOH . 
D 4 HOH X 38 196 39 HOH HOH . 
D 4 HOH X 39 197 40 HOH HOH . 
D 4 HOH X 40 198 41 HOH HOH . 
D 4 HOH X 41 199 42 HOH HOH . 
D 4 HOH X 42 200 43 HOH HOH . 
D 4 HOH X 43 201 44 HOH HOH . 
D 4 HOH X 44 202 45 HOH HOH . 
D 4 HOH X 45 203 46 HOH HOH . 
D 4 HOH X 46 204 47 HOH HOH . 
D 4 HOH X 47 205 48 HOH HOH . 
D 4 HOH X 48 206 49 HOH HOH . 
D 4 HOH X 49 207 50 HOH HOH . 
D 4 HOH X 50 208 51 HOH HOH . 
D 4 HOH X 51 209 52 HOH HOH . 
D 4 HOH X 52 210 53 HOH HOH . 
D 4 HOH X 53 211 54 HOH HOH . 
D 4 HOH X 54 212 55 HOH HOH . 
D 4 HOH X 55 213 56 HOH HOH . 
D 4 HOH X 56 214 57 HOH HOH . 
D 4 HOH X 57 215 58 HOH HOH . 
D 4 HOH X 58 216 59 HOH HOH . 
D 4 HOH X 59 217 60 HOH HOH . 
D 4 HOH X 60 218 61 HOH HOH . 
D 4 HOH X 61 219 62 HOH HOH . 
D 4 HOH X 62 220 63 HOH HOH . 
D 4 HOH X 63 221 64 HOH HOH . 
D 4 HOH X 64 222 65 HOH HOH . 
D 4 HOH X 65 223 66 HOH HOH . 
D 4 HOH X 66 224 67 HOH HOH . 
D 4 HOH X 67 225 68 HOH HOH . 
D 4 HOH X 68 226 69 HOH HOH . 
D 4 HOH X 69 227 70 HOH HOH . 
D 4 HOH X 70 228 71 HOH HOH . 
D 4 HOH X 71 229 72 HOH HOH . 
D 4 HOH X 72 230 73 HOH HOH . 
D 4 HOH X 73 231 74 HOH HOH . 
D 4 HOH X 74 232 75 HOH HOH . 
D 4 HOH X 75 233 76 HOH HOH . 
D 4 HOH X 76 234 77 HOH HOH . 
D 4 HOH X 77 235 79 HOH HOH . 
D 4 HOH X 78 236 80 HOH HOH . 
D 4 HOH X 79 237 81 HOH HOH . 
D 4 HOH X 80 238 82 HOH HOH . 
D 4 HOH X 81 239 83 HOH HOH . 
D 4 HOH X 82 240 84 HOH HOH . 
D 4 HOH X 83 241 85 HOH HOH . 
D 4 HOH X 84 242 86 HOH HOH . 
D 4 HOH X 85 243 87 HOH HOH . 
D 4 HOH X 86 244 88 HOH HOH . 
D 4 HOH X 87 245 89 HOH HOH . 
D 4 HOH X 88 246 90 HOH HOH . 
D 4 HOH X 89 247 91 HOH HOH . 
D 4 HOH X 90 248 93 HOH HOH . 
D 4 HOH X 91 249 94 HOH HOH . 
D 4 HOH X 92 250 95 HOH HOH . 
D 4 HOH X 93 251 96 HOH HOH . 
D 4 HOH X 94 252 97 HOH HOH . 
D 4 HOH X 95 253 98 HOH HOH . 
D 4 HOH X 96 254 99 HOH HOH . 
D 4 HOH X 97 255 100 HOH HOH . 
D 4 HOH X 98 256 101 HOH HOH . 
D 4 HOH X 99 257 102 HOH HOH . 
D 4 HOH X 100 258 103 HOH HOH . 
D 4 HOH X 101 259 104 HOH HOH . 
D 4 HOH X 102 260 105 HOH HOH . 
D 4 HOH X 103 261 106 HOH HOH . 
D 4 HOH X 104 262 107 HOH HOH . 
D 4 HOH X 105 263 108 HOH HOH . 
D 4 HOH X 106 264 109 HOH HOH . 
D 4 HOH X 107 265 110 HOH HOH . 
D 4 HOH X 108 266 111 HOH HOH . 
D 4 HOH X 109 267 112 HOH HOH . 
D 4 HOH X 110 268 113 HOH HOH . 
D 4 HOH X 111 269 114 HOH HOH . 
D 4 HOH X 112 270 115 HOH HOH . 
D 4 HOH X 113 271 116 HOH HOH . 
D 4 HOH X 114 272 117 HOH HOH . 
D 4 HOH X 115 273 118 HOH HOH . 
D 4 HOH X 116 274 119 HOH HOH . 
D 4 HOH X 117 275 120 HOH HOH . 
D 4 HOH X 118 276 121 HOH HOH . 
D 4 HOH X 119 277 122 HOH HOH . 
D 4 HOH X 120 278 123 HOH HOH . 
D 4 HOH X 121 279 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 24.279 21.567 42.891 1 16.32 ? PA NAP 301 X 1 
HETATM 2 O O1A NAP . . . B 2 25.616 20.834 42.954 1 15.96 ? O1A NAP 301 X 1 
HETATM 3 O O2A NAP . . . B 2 23.181 21.063 42.004 1 14.54 ? O2A NAP 301 X 1 
HETATM 4 O O5B NAP . . . B 2 24.547 23.093 42.468 1 15.59 ? O5B NAP 301 X 1 
HETATM 5 C C5B NAP . . . B 2 23.516 24.051 42.631 1 15.54 ? C5B NAP 301 X 1 
HETATM 6 C C4B NAP . . . B 2 23.979 25.252 41.827 1 16.21 ? C4B NAP 301 X 1 
HETATM 7 O O4B NAP . . . B 2 24.025 24.913 40.436 1 16.23 ? O4B NAP 301 X 1 
HETATM 8 C C3B NAP . . . B 2 23.1 26.483 41.924 1 16.06 ? C3B NAP 301 X 1 
HETATM 9 O O3B NAP . . . B 2 23.307 27.257 43.096 1 15.62 ? O3B NAP 301 X 1 
HETATM 10 C C2B NAP . . . B 2 23.567 27.194 40.676 1 16.04 ? C2B NAP 301 X 1 
HETATM 11 O O2B NAP . . . B 2 24.879 27.699 40.871 1 15.99 ? O2B NAP 301 X 1 
HETATM 12 C C1B NAP . . . B 2 23.679 26.07 39.667 1 16.99 ? C1B NAP 301 X 1 
HETATM 13 N N9A NAP . . . B 2 22.41 25.908 38.922 1 18.3 ? N9A NAP 301 X 1 
HETATM 14 C C8A NAP . . . B 2 21.5 24.928 39.048 1 18.75 ? C8A NAP 301 X 1 
HETATM 15 N N7A NAP . . . B 2 20.474 25.12 38.178 1 19.88 ? N7A NAP 301 X 1 
HETATM 16 C C5A NAP . . . B 2 20.719 26.245 37.49 1 20.41 ? C5A NAP 301 X 1 
HETATM 17 C C6A NAP . . . B 2 20.063 27.018 36.415 1 21.11 ? C6A NAP 301 X 1 
HETATM 18 N N6A NAP . . . B 2 18.872 26.639 35.888 1 22.34 ? N6A NAP 301 X 1 
HETATM 19 N N1A NAP . . . B 2 20.683 28.125 35.989 1 22 ? N1A NAP 301 X 1 
HETATM 20 C C2A NAP . . . B 2 21.872 28.531 36.485 1 21.18 ? C2A NAP 301 X 1 
HETATM 21 N N3A NAP . . . B 2 22.513 27.873 37.458 1 20.25 ? N3A NAP 301 X 1 
HETATM 22 C C4A NAP . . . B 2 22.007 26.752 37.977 1 19.87 ? C4A NAP 301 X 1 
HETATM 23 O O3 NAP . . . B 2 23.727 21.768 44.385 1 15.7 ? O3 NAP 301 X 1 
HETATM 24 P PN NAP . . . B 2 22.79 20.765 45.238 1 15.58 ? PN NAP 301 X 1 
HETATM 25 O O1N NAP . . . B 2 21.493 20.51 44.547 1 15.67 ? O1N NAP 301 X 1 
HETATM 26 O O2N NAP . . . B 2 22.84 21.312 46.648 1 14.76 ? O2N NAP 301 X 1 
HETATM 27 O O5D NAP . . . B 2 23.548 19.353 45.178 1 14.94 ? O5D NAP 301 X 1 
HETATM 28 C C5D NAP . . . B 2 24.78 19.113 45.84 1 14.1 ? C5D NAP 301 X 1 
HETATM 29 C C4D NAP . . . B 2 24.642 17.844 46.669 1 14.13 ? C4D NAP 301 X 1 
HETATM 30 O O4D NAP . . . B 2 24.384 16.704 45.833 1 13.79 ? O4D NAP 301 X 1 
HETATM 31 C C3D NAP . . . B 2 25.925 17.547 47.411 1 13.61 ? C3D NAP 301 X 1 
HETATM 32 O O3D NAP . . . B 2 25.609 16.953 48.669 1 13.51 ? O3D NAP 301 X 1 
HETATM 33 C C2D NAP . . . B 2 26.61 16.543 46.522 1 13.52 ? C2D NAP 301 X 1 
HETATM 34 O O2D NAP . . . B 2 27.522 15.747 47.262 1 13.32 ? O2D NAP 301 X 1 
HETATM 35 C C1D NAP . . . B 2 25.404 15.739 46.05 1 13.21 ? C1D NAP 301 X 1 
HETATM 36 N N1N NAP . . . B 2 25.651 14.962 44.821 1 13.25 ? N1N NAP 301 X 1 
HETATM 37 C C2N NAP . . . B 2 25.347 13.607 44.825 1 13 ? C2N NAP 301 X 1 
HETATM 38 C C3N NAP . . . B 2 25.456 12.874 43.646 1 13.27 ? C3N NAP 301 X 1 
HETATM 39 C C7N NAP . . . B 2 25.122 11.444 43.631 1 13.69 ? C7N NAP 301 X 1 
HETATM 40 O O7N NAP . . . B 2 25.104 10.768 42.597 1 13.52 ? O7N NAP 301 X 1 
HETATM 41 N N7N NAP . . . B 2 24.807 10.827 44.838 1 14.42 ? N7N NAP 301 X 1 
HETATM 42 C C4N NAP . . . B 2 25.872 13.519 42.474 1 13.2 ? C4N NAP 301 X 1 
HETATM 43 C C5N NAP . . . B 2 26.177 14.878 42.487 1 13.35 ? C5N NAP 301 X 1 
HETATM 44 C C6N NAP . . . B 2 26.064 15.608 43.66 1 13.26 ? C6N NAP 301 X 1 
HETATM 45 P P2B NAP . . . B 2 25.155 29.225 41.343 1 16.28 ? P2B NAP 301 X 1 
HETATM 46 O O1X NAP . . . B 2 24.456 29.377 42.663 1 15.71 ? O1X NAP 301 X 1 
HETATM 47 O O2X NAP . . . B 2 26.646 29.408 41.246 1 16.18 ? O2X NAP 301 X 1 
HETATM 48 O O3X NAP . . . B 2 24.474 30.102 40.343 1 13.83 ? O3X NAP 301 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#