data_3FRD # _model_server_result.job_id c6r4Z8UCcAZGoBvJbDPl0w _model_server_result.datetime_utc '2024-11-14 06:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3frd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FRD # _exptl.entry_id 3FRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.413 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FRD _cell.length_a 78.811 _cell.length_b 78.811 _cell.length_c 108.224 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N7 O6' _chem_comp.formula_weight 443.413 _chem_comp.id DHF _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DHF sing 70 n y N1 C8A DHF sing 71 n y N1 HN1 DHF sing 72 n n C2 NA2 DHF sing 73 n n C2 N3 DHF doub 74 n y NA2 HN21 DHF sing 75 n n NA2 HN22 DHF sing 76 n n N3 C4 DHF sing 77 n y C4 O4 DHF doub 78 n n C4 C4A DHF sing 79 n y C4A N5 DHF sing 80 n n C4A C8A DHF doub 81 n y N5 C6 DHF doub 82 n n C6 C7 DHF sing 83 n n C6 C9 DHF sing 84 n n C7 N8 DHF sing 85 n n C7 H71 DHF sing 86 n n C7 H72 DHF sing 87 n n N8 C8A DHF sing 88 n n N8 HN8 DHF sing 89 n n C9 N10 DHF sing 90 n n C9 H91 DHF sing 91 n n C9 H92 DHF sing 92 n n N10 C14 DHF sing 93 n n N10 HN0 DHF sing 94 n n C11 C12 DHF doub 95 n y C11 C16 DHF sing 96 n y C11 C DHF sing 97 n n C12 C13 DHF sing 98 n y C12 H12 DHF sing 99 n n C13 C14 DHF doub 100 n y C13 H13 DHF sing 101 n n C14 C15 DHF sing 102 n y C15 C16 DHF doub 103 n y C15 H15 DHF sing 104 n n C16 H16 DHF sing 105 n n C O DHF doub 106 n n C N DHF sing 107 n n N CA DHF sing 108 n n N HN DHF sing 109 n n CA CB DHF sing 110 n n CA CT DHF sing 111 n n CA HA DHF sing 112 n n CB CG DHF sing 113 n n CB HB1 DHF sing 114 n n CB HB2 DHF sing 115 n n CG CD DHF sing 116 n n CG HG1 DHF sing 117 n n CG HG2 DHF sing 118 n n CD OE1 DHF doub 119 n n CD OE2 DHF sing 120 n n OE2 HOE2 DHF sing 121 n n CT O1 DHF doub 122 n n CT O2 DHF sing 123 n n O2 HO2 DHF sing 124 n n # _atom_sites.entry_id 3FRD _atom_sites.fract_transf_matrix[1][1] 0.012689 _atom_sites.fract_transf_matrix[1][2] 0.007326 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 DHF X 1 300 300 DHF FLT . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 3 HOH HOH . D 4 HOH X 3 161 4 HOH HOH . D 4 HOH X 4 162 5 HOH HOH . D 4 HOH X 5 163 6 HOH HOH . D 4 HOH X 6 164 8 HOH HOH . D 4 HOH X 7 165 9 HOH HOH . D 4 HOH X 8 166 10 HOH HOH . D 4 HOH X 9 167 11 HOH HOH . D 4 HOH X 10 168 12 HOH HOH . D 4 HOH X 11 169 13 HOH HOH . D 4 HOH X 12 170 14 HOH HOH . D 4 HOH X 13 171 15 HOH HOH . D 4 HOH X 14 172 16 HOH HOH . D 4 HOH X 15 173 17 HOH HOH . D 4 HOH X 16 174 18 HOH HOH . D 4 HOH X 17 175 19 HOH HOH . D 4 HOH X 18 176 20 HOH HOH . D 4 HOH X 19 177 21 HOH HOH . D 4 HOH X 20 178 22 HOH HOH . D 4 HOH X 21 179 23 HOH HOH . D 4 HOH X 22 180 24 HOH HOH . D 4 HOH X 23 181 25 HOH HOH . D 4 HOH X 24 182 26 HOH HOH . D 4 HOH X 25 183 27 HOH HOH . D 4 HOH X 26 184 28 HOH HOH . D 4 HOH X 27 185 29 HOH HOH . D 4 HOH X 28 186 30 HOH HOH . D 4 HOH X 29 187 31 HOH HOH . D 4 HOH X 30 188 32 HOH HOH . D 4 HOH X 31 189 34 HOH HOH . D 4 HOH X 32 190 36 HOH HOH . D 4 HOH X 33 191 37 HOH HOH . D 4 HOH X 34 192 38 HOH HOH . D 4 HOH X 35 193 39 HOH HOH . D 4 HOH X 36 194 40 HOH HOH . D 4 HOH X 37 195 41 HOH HOH . D 4 HOH X 38 196 42 HOH HOH . D 4 HOH X 39 197 43 HOH HOH . D 4 HOH X 40 198 44 HOH HOH . D 4 HOH X 41 199 45 HOH HOH . D 4 HOH X 42 200 46 HOH HOH . D 4 HOH X 43 201 47 HOH HOH . D 4 HOH X 44 202 48 HOH HOH . D 4 HOH X 45 203 49 HOH HOH . D 4 HOH X 46 204 50 HOH HOH . D 4 HOH X 47 205 51 HOH HOH . D 4 HOH X 48 206 55 HOH HOH . D 4 HOH X 49 207 56 HOH HOH . D 4 HOH X 50 208 57 HOH HOH . D 4 HOH X 51 209 58 HOH HOH . D 4 HOH X 52 210 59 HOH HOH . D 4 HOH X 53 211 60 HOH HOH . D 4 HOH X 54 212 61 HOH HOH . D 4 HOH X 55 213 65 HOH HOH . D 4 HOH X 56 214 66 HOH HOH . D 4 HOH X 57 215 67 HOH HOH . D 4 HOH X 58 216 68 HOH HOH . D 4 HOH X 59 217 69 HOH HOH . D 4 HOH X 60 218 70 HOH HOH . D 4 HOH X 61 219 71 HOH HOH . D 4 HOH X 62 220 72 HOH HOH . D 4 HOH X 63 221 73 HOH HOH . D 4 HOH X 64 222 74 HOH HOH . D 4 HOH X 65 223 75 HOH HOH . D 4 HOH X 66 224 76 HOH HOH . D 4 HOH X 67 225 77 HOH HOH . D 4 HOH X 68 226 79 HOH HOH . D 4 HOH X 69 227 80 HOH HOH . D 4 HOH X 70 228 81 HOH HOH . D 4 HOH X 71 229 82 HOH HOH . D 4 HOH X 72 230 83 HOH HOH . D 4 HOH X 73 231 84 HOH HOH . D 4 HOH X 74 232 85 HOH HOH . D 4 HOH X 75 233 86 HOH HOH . D 4 HOH X 76 234 87 HOH HOH . D 4 HOH X 77 235 88 HOH HOH . D 4 HOH X 78 236 89 HOH HOH . D 4 HOH X 79 237 90 HOH HOH . D 4 HOH X 80 238 91 HOH HOH . D 4 HOH X 81 239 92 HOH HOH . D 4 HOH X 82 240 93 HOH HOH . D 4 HOH X 83 241 94 HOH HOH . D 4 HOH X 84 242 95 HOH HOH . D 4 HOH X 85 243 96 HOH HOH . D 4 HOH X 86 244 97 HOH HOH . D 4 HOH X 87 245 98 HOH HOH . D 4 HOH X 88 246 100 HOH HOH . D 4 HOH X 89 247 101 HOH HOH . D 4 HOH X 90 248 102 HOH HOH . D 4 HOH X 91 249 103 HOH HOH . D 4 HOH X 92 250 104 HOH HOH . D 4 HOH X 93 251 105 HOH HOH . D 4 HOH X 94 252 106 HOH HOH . D 4 HOH X 95 253 107 HOH HOH . D 4 HOH X 96 254 108 HOH HOH . D 4 HOH X 97 255 109 HOH HOH . D 4 HOH X 98 256 110 HOH HOH . D 4 HOH X 99 257 111 HOH HOH . D 4 HOH X 100 258 112 HOH HOH . D 4 HOH X 101 259 113 HOH HOH . D 4 HOH X 102 260 114 HOH HOH . D 4 HOH X 103 261 115 HOH HOH . D 4 HOH X 104 262 116 HOH HOH . D 4 HOH X 105 263 117 HOH HOH . D 4 HOH X 106 264 118 HOH HOH . D 4 HOH X 107 265 119 HOH HOH . D 4 HOH X 108 266 121 HOH HOH . D 4 HOH X 109 267 122 HOH HOH . D 4 HOH X 110 268 123 HOH HOH . D 4 HOH X 111 269 124 HOH HOH . D 4 HOH X 112 270 125 HOH HOH . D 4 HOH X 113 271 126 HOH HOH . D 4 HOH X 114 272 127 HOH HOH . D 4 HOH X 115 273 128 HOH HOH . D 4 HOH X 116 274 130 HOH HOH . D 4 HOH X 117 275 131 HOH HOH . D 4 HOH X 118 276 132 HOH HOH . D 4 HOH X 119 277 133 HOH HOH . D 4 HOH X 120 278 136 HOH HOH . D 4 HOH X 121 279 137 HOH HOH . D 4 HOH X 122 280 138 HOH HOH . D 4 HOH X 123 281 139 HOH HOH . D 4 HOH X 124 282 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DHF . . . C 3 26.619 9.014 40.099 1 53.45 ? N1 DHF 300 X 1 HETATM 2 C C2 DHF . . . C 3 26.789 7.742 40.647 1 53.53 ? C2 DHF 300 X 1 HETATM 3 N NA2 DHF . . . C 3 26.137 6.678 40.12 1 53.44 ? NA2 DHF 300 X 1 HETATM 4 N N3 DHF . . . C 3 27.642 7.571 41.745 1 53.78 ? N3 DHF 300 X 1 HETATM 5 C C4 DHF . . . C 3 28.356 8.671 42.323 1 53.83 ? C4 DHF 300 X 1 HETATM 6 O O4 DHF . . . C 3 29.083 8.43 43.308 0.88 53.59 ? O4 DHF 300 X 1 HETATM 7 C C4A DHF . . . C 3 28.171 9.948 41.706 1 53.63 ? C4A DHF 300 X 1 HETATM 8 N N5 DHF . . . C 3 28.917 11.085 42.238 1 53.73 ? N5 DHF 300 X 1 HETATM 9 C C6 DHF . . . C 3 28.805 12.331 41.494 1 54.25 ? C6 DHF 300 X 1 HETATM 10 C C7 DHF . . . C 3 27.965 12.465 40.448 1 53.9 ? C7 DHF 300 X 1 HETATM 11 N N8 DHF . . . C 3 27.137 11.364 39.979 1 53.67 ? N8 DHF 300 X 1 HETATM 12 C C8A DHF . . . C 3 27.338 10.12 40.64 1 53.55 ? C8A DHF 300 X 1 HETATM 13 C C9 DHF . . . C 3 29.681 13.464 41.966 1 55.52 ? C9 DHF 300 X 1 HETATM 14 N N10 DHF . . . C 3 30.818 13.022 42.809 1 56.74 ? N10 DHF 300 X 1 HETATM 15 C C11 DHF . . . C 3 34.233 11.138 41.268 1 58.85 ? C11 DHF 300 X 1 HETATM 16 C C12 DHF . . . C 3 34.199 11.592 42.6 1 58.68 ? C12 DHF 300 X 1 HETATM 17 C C13 DHF . . . C 3 33.068 12.218 43.099 1 58.29 ? C13 DHF 300 X 1 HETATM 18 C C14 DHF . . . C 3 31.951 12.41 42.267 1 57.84 ? C14 DHF 300 X 1 HETATM 19 C C15 DHF . . . C 3 31.981 11.974 40.93 1 58.36 ? C15 DHF 300 X 1 HETATM 20 C C16 DHF . . . C 3 33.11 11.337 40.442 1 58.68 ? C16 DHF 300 X 1 HETATM 21 C C DHF . . . C 3 35.417 10.492 40.739 1 58.83 ? C DHF 300 X 1 HETATM 22 O O DHF . . . C 3 36.614 10.691 41.261 1 59.25 ? O DHF 300 X 1 HETATM 23 N N DHF . . . C 3 35.367 9.673 39.677 1 59.43 ? N DHF 300 X 1 HETATM 24 C CA DHF . . . C 3 36.573 9.144 39.006 1 59.51 ? CA DHF 300 X 1 HETATM 25 C CB DHF . . . C 3 36.832 7.673 39.355 1 59.76 ? CB DHF 300 X 1 HETATM 26 C CG DHF . . . C 3 37.55 7.532 40.701 1 60.15 ? CG DHF 300 X 1 HETATM 27 C CD DHF . . . C 3 37.927 6.102 40.956 1 60.6 ? CD DHF 300 X 1 HETATM 28 O OE1 DHF . . . C 3 38.405 5.418 39.998 1 60.58 ? OE1 DHF 300 X 1 HETATM 29 O OE2 DHF . . . C 3 37.768 5.637 42.127 1 60.72 ? OE2 DHF 300 X 1 HETATM 30 C CT DHF . . . C 3 36.406 9.284 37.521 1 59.81 ? CT DHF 300 X 1 HETATM 31 O O1 DHF . . . C 3 37.438 9.213 36.788 1 60.03 ? O1 DHF 300 X 1 HETATM 32 O O2 DHF . . . C 3 35.238 9.458 37.056 1 59.08 ? O2 DHF 300 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #