data_3FRD
#
_model_server_result.job_id            CAMtwa5EflWamu8Kdb0SzQ 
_model_server_result.datetime_utc      '2024-12-03 06:42:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3frd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3FRD 
#
_exptl.entry_id    3FRD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FRD 
_cell.length_a            78.811 
_cell.length_b            78.811 
_cell.length_c            108.224 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 279 n n 
PA O2A NDP sing 280 n n 
PA O5B NDP sing 281 n n 
PA O3 NDP sing 282 n n 
O2A HOA2 NDP sing 283 n n 
O5B C5B NDP sing 284 n n 
C5B C4B NDP sing 285 n n 
C5B H51A NDP sing 286 n n 
C5B H52A NDP sing 287 n n 
C4B O4B NDP sing 288 n n 
C4B C3B NDP sing 289 n n 
C4B H4B NDP sing 290 n n 
O4B C1B NDP sing 291 n n 
C3B O3B NDP sing 292 n n 
C3B C2B NDP sing 293 n n 
C3B H3B NDP sing 294 n n 
O3B HO3A NDP sing 295 n n 
C2B O2B NDP sing 296 n n 
C2B C1B NDP sing 297 n n 
C2B H2B NDP sing 298 n n 
O2B P2B NDP sing 299 n n 
C1B N9A NDP sing 300 n n 
C1B H1B NDP sing 301 n n 
N9A C8A NDP sing 302 n y 
N9A C4A NDP sing 303 n y 
C8A N7A NDP doub 304 n y 
C8A H8A NDP sing 305 n n 
N7A C5A NDP sing 306 n y 
C5A C6A NDP sing 307 n y 
C5A C4A NDP doub 308 n y 
C6A N6A NDP sing 309 n n 
C6A N1A NDP doub 310 n y 
N6A H61A NDP sing 311 n n 
N6A H62A NDP sing 312 n n 
N1A C2A NDP sing 313 n y 
C2A N3A NDP doub 314 n y 
C2A H2A NDP sing 315 n n 
N3A C4A NDP sing 316 n y 
O3 PN NDP sing 317 n n 
PN O1N NDP doub 318 n n 
PN O2N NDP sing 319 n n 
PN O5D NDP sing 320 n n 
O2N H21N NDP sing 321 n n 
O5D C5D NDP sing 322 n n 
C5D C4D NDP sing 323 n n 
C5D H51N NDP sing 324 n n 
C5D H52N NDP sing 325 n n 
C4D O4D NDP sing 326 n n 
C4D C3D NDP sing 327 n n 
C4D H4D NDP sing 328 n n 
O4D C1D NDP sing 329 n n 
C3D O3D NDP sing 330 n n 
C3D C2D NDP sing 331 n n 
C3D H3D NDP sing 332 n n 
O3D HO3N NDP sing 333 n n 
C2D O2D NDP sing 334 n n 
C2D C1D NDP sing 335 n n 
C2D H2D NDP sing 336 n n 
O2D HO2N NDP sing 337 n n 
C1D N1N NDP sing 338 n n 
C1D H1D NDP sing 339 n n 
N1N C2N NDP sing 340 n n 
N1N C6N NDP sing 341 n n 
C2N C3N NDP doub 342 n n 
C2N H2N NDP sing 343 n n 
C3N C7N NDP sing 344 n n 
C3N C4N NDP sing 345 n n 
C7N O7N NDP doub 346 n n 
C7N N7N NDP sing 347 n n 
N7N H71N NDP sing 348 n n 
N7N H72N NDP sing 349 n n 
C4N C5N NDP sing 350 n n 
C4N H41N NDP sing 351 n n 
C4N H42N NDP sing 352 n n 
C5N C6N NDP doub 353 n n 
C5N H5N NDP sing 354 n n 
C6N H6N NDP sing 355 n n 
P2B O1X NDP doub 356 n n 
P2B O2X NDP sing 357 n n 
P2B O3X NDP sing 358 n n 
O2X HOP2 NDP sing 359 n n 
O3X HOP3 NDP sing 360 n n 
#
_atom_sites.entry_id                     3FRD 
_atom_sites.fract_transf_matrix[1][1]    0.012689 
_atom_sites.fract_transf_matrix[1][2]    0.007326 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00924 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 301 301 NDP NAP . 
C 3 DHF X 1 300 300 DHF FLT . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 3 HOH HOH . 
D 4 HOH X 3 161 4 HOH HOH . 
D 4 HOH X 4 162 5 HOH HOH . 
D 4 HOH X 5 163 6 HOH HOH . 
D 4 HOH X 6 164 8 HOH HOH . 
D 4 HOH X 7 165 9 HOH HOH . 
D 4 HOH X 8 166 10 HOH HOH . 
D 4 HOH X 9 167 11 HOH HOH . 
D 4 HOH X 10 168 12 HOH HOH . 
D 4 HOH X 11 169 13 HOH HOH . 
D 4 HOH X 12 170 14 HOH HOH . 
D 4 HOH X 13 171 15 HOH HOH . 
D 4 HOH X 14 172 16 HOH HOH . 
D 4 HOH X 15 173 17 HOH HOH . 
D 4 HOH X 16 174 18 HOH HOH . 
D 4 HOH X 17 175 19 HOH HOH . 
D 4 HOH X 18 176 20 HOH HOH . 
D 4 HOH X 19 177 21 HOH HOH . 
D 4 HOH X 20 178 22 HOH HOH . 
D 4 HOH X 21 179 23 HOH HOH . 
D 4 HOH X 22 180 24 HOH HOH . 
D 4 HOH X 23 181 25 HOH HOH . 
D 4 HOH X 24 182 26 HOH HOH . 
D 4 HOH X 25 183 27 HOH HOH . 
D 4 HOH X 26 184 28 HOH HOH . 
D 4 HOH X 27 185 29 HOH HOH . 
D 4 HOH X 28 186 30 HOH HOH . 
D 4 HOH X 29 187 31 HOH HOH . 
D 4 HOH X 30 188 32 HOH HOH . 
D 4 HOH X 31 189 34 HOH HOH . 
D 4 HOH X 32 190 36 HOH HOH . 
D 4 HOH X 33 191 37 HOH HOH . 
D 4 HOH X 34 192 38 HOH HOH . 
D 4 HOH X 35 193 39 HOH HOH . 
D 4 HOH X 36 194 40 HOH HOH . 
D 4 HOH X 37 195 41 HOH HOH . 
D 4 HOH X 38 196 42 HOH HOH . 
D 4 HOH X 39 197 43 HOH HOH . 
D 4 HOH X 40 198 44 HOH HOH . 
D 4 HOH X 41 199 45 HOH HOH . 
D 4 HOH X 42 200 46 HOH HOH . 
D 4 HOH X 43 201 47 HOH HOH . 
D 4 HOH X 44 202 48 HOH HOH . 
D 4 HOH X 45 203 49 HOH HOH . 
D 4 HOH X 46 204 50 HOH HOH . 
D 4 HOH X 47 205 51 HOH HOH . 
D 4 HOH X 48 206 55 HOH HOH . 
D 4 HOH X 49 207 56 HOH HOH . 
D 4 HOH X 50 208 57 HOH HOH . 
D 4 HOH X 51 209 58 HOH HOH . 
D 4 HOH X 52 210 59 HOH HOH . 
D 4 HOH X 53 211 60 HOH HOH . 
D 4 HOH X 54 212 61 HOH HOH . 
D 4 HOH X 55 213 65 HOH HOH . 
D 4 HOH X 56 214 66 HOH HOH . 
D 4 HOH X 57 215 67 HOH HOH . 
D 4 HOH X 58 216 68 HOH HOH . 
D 4 HOH X 59 217 69 HOH HOH . 
D 4 HOH X 60 218 70 HOH HOH . 
D 4 HOH X 61 219 71 HOH HOH . 
D 4 HOH X 62 220 72 HOH HOH . 
D 4 HOH X 63 221 73 HOH HOH . 
D 4 HOH X 64 222 74 HOH HOH . 
D 4 HOH X 65 223 75 HOH HOH . 
D 4 HOH X 66 224 76 HOH HOH . 
D 4 HOH X 67 225 77 HOH HOH . 
D 4 HOH X 68 226 79 HOH HOH . 
D 4 HOH X 69 227 80 HOH HOH . 
D 4 HOH X 70 228 81 HOH HOH . 
D 4 HOH X 71 229 82 HOH HOH . 
D 4 HOH X 72 230 83 HOH HOH . 
D 4 HOH X 73 231 84 HOH HOH . 
D 4 HOH X 74 232 85 HOH HOH . 
D 4 HOH X 75 233 86 HOH HOH . 
D 4 HOH X 76 234 87 HOH HOH . 
D 4 HOH X 77 235 88 HOH HOH . 
D 4 HOH X 78 236 89 HOH HOH . 
D 4 HOH X 79 237 90 HOH HOH . 
D 4 HOH X 80 238 91 HOH HOH . 
D 4 HOH X 81 239 92 HOH HOH . 
D 4 HOH X 82 240 93 HOH HOH . 
D 4 HOH X 83 241 94 HOH HOH . 
D 4 HOH X 84 242 95 HOH HOH . 
D 4 HOH X 85 243 96 HOH HOH . 
D 4 HOH X 86 244 97 HOH HOH . 
D 4 HOH X 87 245 98 HOH HOH . 
D 4 HOH X 88 246 100 HOH HOH . 
D 4 HOH X 89 247 101 HOH HOH . 
D 4 HOH X 90 248 102 HOH HOH . 
D 4 HOH X 91 249 103 HOH HOH . 
D 4 HOH X 92 250 104 HOH HOH . 
D 4 HOH X 93 251 105 HOH HOH . 
D 4 HOH X 94 252 106 HOH HOH . 
D 4 HOH X 95 253 107 HOH HOH . 
D 4 HOH X 96 254 108 HOH HOH . 
D 4 HOH X 97 255 109 HOH HOH . 
D 4 HOH X 98 256 110 HOH HOH . 
D 4 HOH X 99 257 111 HOH HOH . 
D 4 HOH X 100 258 112 HOH HOH . 
D 4 HOH X 101 259 113 HOH HOH . 
D 4 HOH X 102 260 114 HOH HOH . 
D 4 HOH X 103 261 115 HOH HOH . 
D 4 HOH X 104 262 116 HOH HOH . 
D 4 HOH X 105 263 117 HOH HOH . 
D 4 HOH X 106 264 118 HOH HOH . 
D 4 HOH X 107 265 119 HOH HOH . 
D 4 HOH X 108 266 121 HOH HOH . 
D 4 HOH X 109 267 122 HOH HOH . 
D 4 HOH X 110 268 123 HOH HOH . 
D 4 HOH X 111 269 124 HOH HOH . 
D 4 HOH X 112 270 125 HOH HOH . 
D 4 HOH X 113 271 126 HOH HOH . 
D 4 HOH X 114 272 127 HOH HOH . 
D 4 HOH X 115 273 128 HOH HOH . 
D 4 HOH X 116 274 130 HOH HOH . 
D 4 HOH X 117 275 131 HOH HOH . 
D 4 HOH X 118 276 132 HOH HOH . 
D 4 HOH X 119 277 133 HOH HOH . 
D 4 HOH X 120 278 136 HOH HOH . 
D 4 HOH X 121 279 137 HOH HOH . 
D 4 HOH X 122 280 138 HOH HOH . 
D 4 HOH X 123 281 139 HOH HOH . 
D 4 HOH X 124 282 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 23.892 21.362 42.669 1 36.32 ? PA NDP 301 X 1 
HETATM 2 O O1A NDP . . . B 2 25.036 20.445 42.456 1 37.21 ? O1A NDP 301 X 1 
HETATM 3 O O2A NDP . . . B 2 22.667 21.041 41.903 1 35.16 ? O2A NDP 301 X 1 
HETATM 4 O O5B NDP . . . B 2 24.375 22.847 42.333 1 36.19 ? O5B NDP 301 X 1 
HETATM 5 C C5B NDP . . . B 2 23.497 23.89 42.672 1 35.51 ? C5B NDP 301 X 1 
HETATM 6 C C4B NDP . . . B 2 23.9 25.069 41.823 1 35.66 ? C4B NDP 301 X 1 
HETATM 7 O O4B NDP . . . B 2 23.869 24.745 40.449 1 35.66 ? O4B NDP 301 X 1 
HETATM 8 C C3B NDP . . . B 2 22.985 26.263 41.965 1 35.56 ? C3B NDP 301 X 1 
HETATM 9 O O3B NDP . . . B 2 23.164 26.931 43.194 1 35.23 ? O3B NDP 301 X 1 
HETATM 10 C C2B NDP . . . B 2 23.429 27.014 40.727 1 35.52 ? C2B NDP 301 X 1 
HETATM 11 O O2B NDP . . . B 2 24.711 27.572 40.869 1 34.89 ? O2B NDP 301 X 1 
HETATM 12 C C1B NDP . . . B 2 23.57 25.904 39.706 1 36.15 ? C1B NDP 301 X 1 
HETATM 13 N N9A NDP . . . B 2 22.319 25.77 38.968 1 36.04 ? N9A NDP 301 X 1 
HETATM 14 C C8A NDP . . . B 2 21.373 24.797 39.133 1 36.46 ? C8A NDP 301 X 1 
HETATM 15 N N7A NDP . . . B 2 20.376 25.026 38.247 1 36.74 ? N7A NDP 301 X 1 
HETATM 16 C C5A NDP . . . B 2 20.677 26.136 37.531 1 36.66 ? C5A NDP 301 X 1 
HETATM 17 C C6A NDP . . . B 2 20.014 26.81 36.514 1 36.64 ? C6A NDP 301 X 1 
HETATM 18 N N6A NDP . . . B 2 18.839 26.375 36.073 1 36.65 ? N6A NDP 301 X 1 
HETATM 19 N N1A NDP . . . B 2 20.589 27.935 35.955 1 36.7 ? N1A NDP 301 X 1 
HETATM 20 C C2A NDP . . . B 2 21.818 28.383 36.407 1 36.51 ? C2A NDP 301 X 1 
HETATM 21 N N3A NDP . . . B 2 22.468 27.71 37.421 1 36.72 ? N3A NDP 301 X 1 
HETATM 22 C C4A NDP . . . B 2 21.904 26.609 37.977 1 36.38 ? C4A NDP 301 X 1 
HETATM 23 O O3 NDP . . . B 2 23.568 21.492 44.235 1 35.97 ? O3 NDP 301 X 1 
HETATM 24 P PN NDP . . . B 2 22.668 20.606 45.233 1 35.39 ? PN NDP 301 X 1 
HETATM 25 O O1N NDP . . . B 2 21.291 20.582 44.712 1 35.83 ? O1N NDP 301 X 1 
HETATM 26 O O2N NDP . . . B 2 22.955 21.097 46.603 1 36.19 ? O2N NDP 301 X 1 
HETATM 27 O O5D NDP . . . B 2 23.33 19.153 45.129 1 34.45 ? O5D NDP 301 X 1 
HETATM 28 C C5D NDP . . . B 2 24.659 18.969 45.573 1 34.5 ? C5D NDP 301 X 1 
HETATM 29 C C4D NDP . . . B 2 24.71 17.742 46.476 1 34.77 ? C4D NDP 301 X 1 
HETATM 30 O O4D NDP . . . B 2 24.416 16.602 45.687 1 34.18 ? O4D NDP 301 X 1 
HETATM 31 C C3D NDP . . . B 2 26.066 17.485 47.108 1 34.62 ? C3D NDP 301 X 1 
HETATM 32 O O3D NDP . . . B 2 25.904 16.967 48.403 1 34.07 ? O3D NDP 301 X 1 
HETATM 33 C C2D NDP . . . B 2 26.671 16.409 46.246 1 34.66 ? C2D NDP 301 X 1 
HETATM 34 O O2D NDP . . . B 2 27.529 15.58 46.969 1 35.52 ? O2D NDP 301 X 1 
HETATM 35 C C1D NDP . . . B 2 25.434 15.652 45.826 1 34.83 ? C1D NDP 301 X 1 
HETATM 36 N N1N NDP . . . B 2 25.542 14.932 44.557 1 35.36 ? N1N NDP 301 X 1 
HETATM 37 C C2N NDP . . . B 2 25.486 13.582 44.611 1 35.73 ? C2N NDP 301 X 1 
HETATM 38 C C3N NDP . . . B 2 25.548 12.833 43.454 1 35.62 ? C3N NDP 301 X 1 
HETATM 39 C C7N NDP . . . B 2 25.09 11.412 43.55 1 35.5 ? C7N NDP 301 X 1 
HETATM 40 O O7N NDP . . . B 2 24.802 10.71 42.363 1 35.11 ? O7N NDP 301 X 1 
HETATM 41 N N7N NDP . . . B 2 24.973 10.872 44.767 1 35.07 ? N7N NDP 301 X 1 
HETATM 42 C C4N NDP . . . B 2 25.669 13.47 42.226 1 35.58 ? C4N NDP 301 X 1 
HETATM 43 C C5N NDP . . . B 2 25.727 14.855 42.183 1 35.94 ? C5N NDP 301 X 1 
HETATM 44 C C6N NDP . . . B 2 25.652 15.581 43.365 1 36.19 ? C6N NDP 301 X 1 
HETATM 45 P P2B NDP . . . B 2 24.895 29.15 41.189 1 34.58 ? P2B NDP 301 X 1 
HETATM 46 O O1X NDP . . . B 2 24.089 29.909 40.164 1 32.01 ? O1X NDP 301 X 1 
HETATM 47 O O2X NDP . . . B 2 26.384 29.405 41.116 1 33.78 ? O2X NDP 301 X 1 
HETATM 48 O O3X NDP . . . B 2 24.361 29.357 42.581 1 33.43 ? O3X NDP 301 X 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#