data_3FRE # _model_server_result.job_id 7qIG3tv7lJGRo8TtT9rchQ _model_server_result.datetime_utc '2024-11-05 07:58:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FRE # _exptl.entry_id 3FRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FRE _cell.length_a 79.328 _cell.length_b 79.328 _cell.length_c 107.781 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 375 n y C1 C8 TOP sing 376 n y C1 H1 TOP sing 377 n n N2 C3 TOP sing 378 n y C3 N4 TOP sing 379 n n C3 N5 TOP doub 380 n y N4 HN41 TOP sing 381 n n N4 HN42 TOP sing 382 n n N5 C6 TOP sing 383 n y C6 N7 TOP sing 384 n n C6 C8 TOP doub 385 n y N7 HN71 TOP sing 386 n n N7 HN72 TOP sing 387 n n C8 C9 TOP sing 388 n n C9 C10 TOP sing 389 n n C9 H91 TOP sing 390 n n C9 H92 TOP sing 391 n n C10 C11 TOP doub 392 n y C10 C21 TOP sing 393 n y C11 C12 TOP sing 394 n y C11 H11 TOP sing 395 n n C12 O13 TOP sing 396 n n C12 C15 TOP doub 397 n y O13 C14 TOP sing 398 n n C14 H141 TOP sing 399 n n C14 H142 TOP sing 400 n n C14 H143 TOP sing 401 n n C15 O16 TOP sing 402 n n C15 C18 TOP sing 403 n y O16 C17 TOP sing 404 n n C17 H171 TOP sing 405 n n C17 H172 TOP sing 406 n n C17 H173 TOP sing 407 n n C18 O19 TOP sing 408 n n C18 C21 TOP doub 409 n y O19 C20 TOP sing 410 n n C20 H201 TOP sing 411 n n C20 H202 TOP sing 412 n n C20 H203 TOP sing 413 n n C21 H21 TOP sing 414 n n # _atom_sites.entry_id 3FRE _atom_sites.fract_transf_matrix[1][1] 0.012606 _atom_sites.fract_transf_matrix[1][2] 0.007278 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 TOP X 1 300 300 TOP TMP . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 2 HOH HOH . D 4 HOH X 3 161 4 HOH HOH . D 4 HOH X 4 162 5 HOH HOH . D 4 HOH X 5 163 6 HOH HOH . D 4 HOH X 6 164 8 HOH HOH . D 4 HOH X 7 165 9 HOH HOH . D 4 HOH X 8 166 10 HOH HOH . D 4 HOH X 9 167 11 HOH HOH . D 4 HOH X 10 168 12 HOH HOH . D 4 HOH X 11 169 13 HOH HOH . D 4 HOH X 12 170 14 HOH HOH . D 4 HOH X 13 171 15 HOH HOH . D 4 HOH X 14 172 16 HOH HOH . D 4 HOH X 15 173 18 HOH HOH . D 4 HOH X 16 174 19 HOH HOH . D 4 HOH X 17 175 20 HOH HOH . D 4 HOH X 18 176 21 HOH HOH . D 4 HOH X 19 177 22 HOH HOH . D 4 HOH X 20 178 24 HOH HOH . D 4 HOH X 21 179 25 HOH HOH . D 4 HOH X 22 180 26 HOH HOH . D 4 HOH X 23 181 28 HOH HOH . D 4 HOH X 24 182 29 HOH HOH . D 4 HOH X 25 183 30 HOH HOH . D 4 HOH X 26 184 31 HOH HOH . D 4 HOH X 27 185 32 HOH HOH . D 4 HOH X 28 186 33 HOH HOH . D 4 HOH X 29 187 34 HOH HOH . D 4 HOH X 30 188 35 HOH HOH . D 4 HOH X 31 189 36 HOH HOH . D 4 HOH X 32 190 37 HOH HOH . D 4 HOH X 33 191 38 HOH HOH . D 4 HOH X 34 192 39 HOH HOH . D 4 HOH X 35 193 40 HOH HOH . D 4 HOH X 36 194 41 HOH HOH . D 4 HOH X 37 195 42 HOH HOH . D 4 HOH X 38 196 43 HOH HOH . D 4 HOH X 39 197 44 HOH HOH . D 4 HOH X 40 198 45 HOH HOH . D 4 HOH X 41 199 46 HOH HOH . D 4 HOH X 42 200 47 HOH HOH . D 4 HOH X 43 201 48 HOH HOH . D 4 HOH X 44 202 49 HOH HOH . D 4 HOH X 45 203 50 HOH HOH . D 4 HOH X 46 204 51 HOH HOH . D 4 HOH X 47 205 52 HOH HOH . D 4 HOH X 48 206 53 HOH HOH . D 4 HOH X 49 207 54 HOH HOH . D 4 HOH X 50 208 55 HOH HOH . D 4 HOH X 51 209 56 HOH HOH . D 4 HOH X 52 210 57 HOH HOH . D 4 HOH X 53 211 58 HOH HOH . D 4 HOH X 54 212 59 HOH HOH . D 4 HOH X 55 213 60 HOH HOH . D 4 HOH X 56 214 61 HOH HOH . D 4 HOH X 57 215 63 HOH HOH . D 4 HOH X 58 216 64 HOH HOH . D 4 HOH X 59 217 65 HOH HOH . D 4 HOH X 60 218 66 HOH HOH . D 4 HOH X 61 219 68 HOH HOH . D 4 HOH X 62 220 69 HOH HOH . D 4 HOH X 63 221 70 HOH HOH . D 4 HOH X 64 222 71 HOH HOH . D 4 HOH X 65 223 73 HOH HOH . D 4 HOH X 66 224 74 HOH HOH . D 4 HOH X 67 225 75 HOH HOH . D 4 HOH X 68 226 76 HOH HOH . D 4 HOH X 69 227 77 HOH HOH . D 4 HOH X 70 228 78 HOH HOH . D 4 HOH X 71 229 79 HOH HOH . D 4 HOH X 72 230 80 HOH HOH . D 4 HOH X 73 231 82 HOH HOH . D 4 HOH X 74 232 83 HOH HOH . D 4 HOH X 75 233 84 HOH HOH . D 4 HOH X 76 234 85 HOH HOH . D 4 HOH X 77 235 86 HOH HOH . D 4 HOH X 78 236 87 HOH HOH . D 4 HOH X 79 237 88 HOH HOH . D 4 HOH X 80 238 89 HOH HOH . D 4 HOH X 81 239 90 HOH HOH . D 4 HOH X 82 240 91 HOH HOH . D 4 HOH X 83 241 92 HOH HOH . D 4 HOH X 84 242 93 HOH HOH . D 4 HOH X 85 243 95 HOH HOH . D 4 HOH X 86 244 96 HOH HOH . D 4 HOH X 87 245 97 HOH HOH . D 4 HOH X 88 246 98 HOH HOH . D 4 HOH X 89 247 99 HOH HOH . D 4 HOH X 90 248 100 HOH HOH . D 4 HOH X 91 249 101 HOH HOH . D 4 HOH X 92 250 102 HOH HOH . D 4 HOH X 93 251 103 HOH HOH . D 4 HOH X 94 252 104 HOH HOH . D 4 HOH X 95 253 105 HOH HOH . D 4 HOH X 96 254 106 HOH HOH . D 4 HOH X 97 255 107 HOH HOH . D 4 HOH X 98 256 108 HOH HOH . D 4 HOH X 99 257 109 HOH HOH . D 4 HOH X 100 258 110 HOH HOH . D 4 HOH X 101 259 111 HOH HOH . D 4 HOH X 102 260 112 HOH HOH . D 4 HOH X 103 261 113 HOH HOH . D 4 HOH X 104 262 114 HOH HOH . D 4 HOH X 105 263 115 HOH HOH . D 4 HOH X 106 264 116 HOH HOH . D 4 HOH X 107 265 117 HOH HOH . D 4 HOH X 108 266 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . C 3 28.725 9.933 41.763 1 17.41 ? C1 TOP 300 X 1 HETATM 2 N N2 TOP . . . C 3 28.204 8.71 41.642 1 17.09 ? N2 TOP 300 X 1 HETATM 3 C C3 TOP . . . C 3 27.228 8.433 40.765 1 17.12 ? C3 TOP 300 X 1 HETATM 4 N N4 TOP . . . C 3 26.733 7.132 40.681 1 16.67 ? N4 TOP 300 X 1 HETATM 5 N N5 TOP . . . C 3 26.716 9.371 39.957 1 17.62 ? N5 TOP 300 X 1 HETATM 6 C C6 TOP . . . C 3 27.171 10.623 40.005 1 17.4 ? C6 TOP 300 X 1 HETATM 7 N N7 TOP . . . C 3 26.628 11.598 39.166 1 17.77 ? N7 TOP 300 X 1 HETATM 8 C C8 TOP . . . C 3 28.25 10.954 40.961 1 17.55 ? C8 TOP 300 X 1 HETATM 9 C C9 TOP . . . C 3 28.785 12.368 41.04 1 17.93 ? C9 TOP 300 X 1 HETATM 10 C C10 TOP . . . C 3 30.014 12.541 41.917 1 17.94 ? C10 TOP 300 X 1 HETATM 11 C C11 TOP . . . C 3 31.213 11.921 41.57 1 17.73 ? C11 TOP 300 X 1 HETATM 12 C C12 TOP . . . C 3 32.353 12.092 42.358 1 18.14 ? C12 TOP 300 X 1 HETATM 13 O O13 TOP . . . C 3 33.489 11.496 42.029 1 18.59 ? O13 TOP 300 X 1 HETATM 14 C C14 TOP . . . C 3 33.592 10.878 40.763 1 18.75 ? C14 TOP 300 X 1 HETATM 15 C C15 TOP . . . C 3 32.298 12.942 43.571 1 17.87 ? C15 TOP 300 X 1 HETATM 16 O O16 TOP . . . C 3 33.365 13.131 44.347 1 18.24 ? O16 TOP 300 X 1 HETATM 17 C C17 TOP . . . C 3 33.899 12.074 45.116 1 18.03 ? C17 TOP 300 X 1 HETATM 18 C C18 TOP . . . C 3 31.01 13.585 43.891 1 17.52 ? C18 TOP 300 X 1 HETATM 19 O O19 TOP . . . C 3 30.908 14.362 44.97 1 17.18 ? O19 TOP 300 X 1 HETATM 20 C C20 TOP . . . C 3 29.701 15.049 45.231 1 16.9 ? C20 TOP 300 X 1 HETATM 21 C C21 TOP . . . C 3 29.92 13.363 43.048 1 17.56 ? C21 TOP 300 X 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #