data_3FRE
#
_model_server_result.job_id            AJq4QF7i3KUwuZpJTd0oCg 
_model_server_result.datetime_utc      '2025-02-18 05:42:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fre 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3FRE 
#
_exptl.entry_id    3FRE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FRE 
_cell.length_a            79.328 
_cell.length_b            79.328 
_cell.length_c            107.781 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 224 n n 
PA O2A NDP sing 225 n n 
PA O5B NDP sing 226 n n 
PA O3 NDP sing 227 n n 
O2A HOA2 NDP sing 228 n n 
O5B C5B NDP sing 229 n n 
C5B C4B NDP sing 230 n n 
C5B H51A NDP sing 231 n n 
C5B H52A NDP sing 232 n n 
C4B O4B NDP sing 233 n n 
C4B C3B NDP sing 234 n n 
C4B H4B NDP sing 235 n n 
O4B C1B NDP sing 236 n n 
C3B O3B NDP sing 237 n n 
C3B C2B NDP sing 238 n n 
C3B H3B NDP sing 239 n n 
O3B HO3A NDP sing 240 n n 
C2B O2B NDP sing 241 n n 
C2B C1B NDP sing 242 n n 
C2B H2B NDP sing 243 n n 
O2B P2B NDP sing 244 n n 
C1B N9A NDP sing 245 n n 
C1B H1B NDP sing 246 n n 
N9A C8A NDP sing 247 n y 
N9A C4A NDP sing 248 n y 
C8A N7A NDP doub 249 n y 
C8A H8A NDP sing 250 n n 
N7A C5A NDP sing 251 n y 
C5A C6A NDP sing 252 n y 
C5A C4A NDP doub 253 n y 
C6A N6A NDP sing 254 n n 
C6A N1A NDP doub 255 n y 
N6A H61A NDP sing 256 n n 
N6A H62A NDP sing 257 n n 
N1A C2A NDP sing 258 n y 
C2A N3A NDP doub 259 n y 
C2A H2A NDP sing 260 n n 
N3A C4A NDP sing 261 n y 
O3 PN NDP sing 262 n n 
PN O1N NDP doub 263 n n 
PN O2N NDP sing 264 n n 
PN O5D NDP sing 265 n n 
O2N H21N NDP sing 266 n n 
O5D C5D NDP sing 267 n n 
C5D C4D NDP sing 268 n n 
C5D H51N NDP sing 269 n n 
C5D H52N NDP sing 270 n n 
C4D O4D NDP sing 271 n n 
C4D C3D NDP sing 272 n n 
C4D H4D NDP sing 273 n n 
O4D C1D NDP sing 274 n n 
C3D O3D NDP sing 275 n n 
C3D C2D NDP sing 276 n n 
C3D H3D NDP sing 277 n n 
O3D HO3N NDP sing 278 n n 
C2D O2D NDP sing 279 n n 
C2D C1D NDP sing 280 n n 
C2D H2D NDP sing 281 n n 
O2D HO2N NDP sing 282 n n 
C1D N1N NDP sing 283 n n 
C1D H1D NDP sing 284 n n 
N1N C2N NDP sing 285 n n 
N1N C6N NDP sing 286 n n 
C2N C3N NDP doub 287 n n 
C2N H2N NDP sing 288 n n 
C3N C7N NDP sing 289 n n 
C3N C4N NDP sing 290 n n 
C7N O7N NDP doub 291 n n 
C7N N7N NDP sing 292 n n 
N7N H71N NDP sing 293 n n 
N7N H72N NDP sing 294 n n 
C4N C5N NDP sing 295 n n 
C4N H41N NDP sing 296 n n 
C4N H42N NDP sing 297 n n 
C5N C6N NDP doub 298 n n 
C5N H5N NDP sing 299 n n 
C6N H6N NDP sing 300 n n 
P2B O1X NDP doub 301 n n 
P2B O2X NDP sing 302 n n 
P2B O3X NDP sing 303 n n 
O2X HOP2 NDP sing 304 n n 
O3X HOP3 NDP sing 305 n n 
#
_atom_sites.entry_id                     3FRE 
_atom_sites.fract_transf_matrix[1][1]    0.012606 
_atom_sites.fract_transf_matrix[1][2]    0.007278 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014556 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 301 301 NDP NAP . 
C 3 TOP X 1 300 300 TOP TMP . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 4 HOH HOH . 
D 4 HOH X 4 162 5 HOH HOH . 
D 4 HOH X 5 163 6 HOH HOH . 
D 4 HOH X 6 164 8 HOH HOH . 
D 4 HOH X 7 165 9 HOH HOH . 
D 4 HOH X 8 166 10 HOH HOH . 
D 4 HOH X 9 167 11 HOH HOH . 
D 4 HOH X 10 168 12 HOH HOH . 
D 4 HOH X 11 169 13 HOH HOH . 
D 4 HOH X 12 170 14 HOH HOH . 
D 4 HOH X 13 171 15 HOH HOH . 
D 4 HOH X 14 172 16 HOH HOH . 
D 4 HOH X 15 173 18 HOH HOH . 
D 4 HOH X 16 174 19 HOH HOH . 
D 4 HOH X 17 175 20 HOH HOH . 
D 4 HOH X 18 176 21 HOH HOH . 
D 4 HOH X 19 177 22 HOH HOH . 
D 4 HOH X 20 178 24 HOH HOH . 
D 4 HOH X 21 179 25 HOH HOH . 
D 4 HOH X 22 180 26 HOH HOH . 
D 4 HOH X 23 181 28 HOH HOH . 
D 4 HOH X 24 182 29 HOH HOH . 
D 4 HOH X 25 183 30 HOH HOH . 
D 4 HOH X 26 184 31 HOH HOH . 
D 4 HOH X 27 185 32 HOH HOH . 
D 4 HOH X 28 186 33 HOH HOH . 
D 4 HOH X 29 187 34 HOH HOH . 
D 4 HOH X 30 188 35 HOH HOH . 
D 4 HOH X 31 189 36 HOH HOH . 
D 4 HOH X 32 190 37 HOH HOH . 
D 4 HOH X 33 191 38 HOH HOH . 
D 4 HOH X 34 192 39 HOH HOH . 
D 4 HOH X 35 193 40 HOH HOH . 
D 4 HOH X 36 194 41 HOH HOH . 
D 4 HOH X 37 195 42 HOH HOH . 
D 4 HOH X 38 196 43 HOH HOH . 
D 4 HOH X 39 197 44 HOH HOH . 
D 4 HOH X 40 198 45 HOH HOH . 
D 4 HOH X 41 199 46 HOH HOH . 
D 4 HOH X 42 200 47 HOH HOH . 
D 4 HOH X 43 201 48 HOH HOH . 
D 4 HOH X 44 202 49 HOH HOH . 
D 4 HOH X 45 203 50 HOH HOH . 
D 4 HOH X 46 204 51 HOH HOH . 
D 4 HOH X 47 205 52 HOH HOH . 
D 4 HOH X 48 206 53 HOH HOH . 
D 4 HOH X 49 207 54 HOH HOH . 
D 4 HOH X 50 208 55 HOH HOH . 
D 4 HOH X 51 209 56 HOH HOH . 
D 4 HOH X 52 210 57 HOH HOH . 
D 4 HOH X 53 211 58 HOH HOH . 
D 4 HOH X 54 212 59 HOH HOH . 
D 4 HOH X 55 213 60 HOH HOH . 
D 4 HOH X 56 214 61 HOH HOH . 
D 4 HOH X 57 215 63 HOH HOH . 
D 4 HOH X 58 216 64 HOH HOH . 
D 4 HOH X 59 217 65 HOH HOH . 
D 4 HOH X 60 218 66 HOH HOH . 
D 4 HOH X 61 219 68 HOH HOH . 
D 4 HOH X 62 220 69 HOH HOH . 
D 4 HOH X 63 221 70 HOH HOH . 
D 4 HOH X 64 222 71 HOH HOH . 
D 4 HOH X 65 223 73 HOH HOH . 
D 4 HOH X 66 224 74 HOH HOH . 
D 4 HOH X 67 225 75 HOH HOH . 
D 4 HOH X 68 226 76 HOH HOH . 
D 4 HOH X 69 227 77 HOH HOH . 
D 4 HOH X 70 228 78 HOH HOH . 
D 4 HOH X 71 229 79 HOH HOH . 
D 4 HOH X 72 230 80 HOH HOH . 
D 4 HOH X 73 231 82 HOH HOH . 
D 4 HOH X 74 232 83 HOH HOH . 
D 4 HOH X 75 233 84 HOH HOH . 
D 4 HOH X 76 234 85 HOH HOH . 
D 4 HOH X 77 235 86 HOH HOH . 
D 4 HOH X 78 236 87 HOH HOH . 
D 4 HOH X 79 237 88 HOH HOH . 
D 4 HOH X 80 238 89 HOH HOH . 
D 4 HOH X 81 239 90 HOH HOH . 
D 4 HOH X 82 240 91 HOH HOH . 
D 4 HOH X 83 241 92 HOH HOH . 
D 4 HOH X 84 242 93 HOH HOH . 
D 4 HOH X 85 243 95 HOH HOH . 
D 4 HOH X 86 244 96 HOH HOH . 
D 4 HOH X 87 245 97 HOH HOH . 
D 4 HOH X 88 246 98 HOH HOH . 
D 4 HOH X 89 247 99 HOH HOH . 
D 4 HOH X 90 248 100 HOH HOH . 
D 4 HOH X 91 249 101 HOH HOH . 
D 4 HOH X 92 250 102 HOH HOH . 
D 4 HOH X 93 251 103 HOH HOH . 
D 4 HOH X 94 252 104 HOH HOH . 
D 4 HOH X 95 253 105 HOH HOH . 
D 4 HOH X 96 254 106 HOH HOH . 
D 4 HOH X 97 255 107 HOH HOH . 
D 4 HOH X 98 256 108 HOH HOH . 
D 4 HOH X 99 257 109 HOH HOH . 
D 4 HOH X 100 258 110 HOH HOH . 
D 4 HOH X 101 259 111 HOH HOH . 
D 4 HOH X 102 260 112 HOH HOH . 
D 4 HOH X 103 261 113 HOH HOH . 
D 4 HOH X 104 262 114 HOH HOH . 
D 4 HOH X 105 263 115 HOH HOH . 
D 4 HOH X 106 264 116 HOH HOH . 
D 4 HOH X 107 265 117 HOH HOH . 
D 4 HOH X 108 266 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 24.192 21.569 42.632 1 18.76 ? PA NDP 301 X 1 
HETATM 2 O O1A NDP . . . B 2 25.505 20.818 42.593 1 18.81 ? O1A NDP 301 X 1 
HETATM 3 O O2A NDP . . . B 2 23.025 21.071 41.826 1 17.97 ? O2A NDP 301 X 1 
HETATM 4 O O5B NDP . . . B 2 24.472 23.08 42.184 1 19 ? O5B NDP 301 X 1 
HETATM 5 C C5B NDP . . . B 2 23.433 24.058 42.216 1 19.29 ? C5B NDP 301 X 1 
HETATM 6 C C4B NDP . . . B 2 23.954 25.255 41.441 1 19.38 ? C4B NDP 301 X 1 
HETATM 7 O O4B NDP . . . B 2 24.018 24.927 40.052 1 19.6 ? O4B NDP 301 X 1 
HETATM 8 C C3B NDP . . . B 2 23.118 26.525 41.51 1 19.48 ? C3B NDP 301 X 1 
HETATM 9 O O3B NDP . . . B 2 23.311 27.279 42.697 1 19.13 ? O3B NDP 301 X 1 
HETATM 10 C C2B NDP . . . B 2 23.65 27.231 40.287 1 19.4 ? C2B NDP 301 X 1 
HETATM 11 O O2B NDP . . . B 2 24.959 27.742 40.543 1 19.26 ? O2B NDP 301 X 1 
HETATM 12 C C1B NDP . . . B 2 23.763 26.106 39.281 1 20.07 ? C1B NDP 301 X 1 
HETATM 13 N N9A NDP . . . B 2 22.497 25.964 38.528 1 20.62 ? N9A NDP 301 X 1 
HETATM 14 C C8A NDP . . . B 2 21.607 24.971 38.68 1 20.62 ? C8A NDP 301 X 1 
HETATM 15 N N7A NDP . . . B 2 20.556 25.143 37.837 1 21.28 ? N7A NDP 301 X 1 
HETATM 16 C C5A NDP . . . B 2 20.774 26.259 37.138 1 21.56 ? C5A NDP 301 X 1 
HETATM 17 C C6A NDP . . . B 2 20.063 27.011 36.084 1 22.09 ? C6A NDP 301 X 1 
HETATM 18 N N6A NDP . . . B 2 18.87 26.578 35.607 1 22.58 ? N6A NDP 301 X 1 
HETATM 19 N N1A NDP . . . B 2 20.644 28.13 35.624 1 22.44 ? N1A NDP 301 X 1 
HETATM 20 C C2A NDP . . . B 2 21.829 28.574 36.092 1 22.13 ? C2A NDP 301 X 1 
HETATM 21 N N3A NDP . . . B 2 22.522 27.932 37.049 1 21.79 ? N3A NDP 301 X 1 
HETATM 22 C C4A NDP . . . B 2 22.057 26.806 37.595 1 21.38 ? C4A NDP 301 X 1 
HETATM 23 O O3 NDP . . . B 2 23.748 21.8 44.216 1 19.46 ? O3 NDP 301 X 1 
HETATM 24 P PN NDP . . . B 2 22.781 20.77 45.071 1 18.81 ? PN NDP 301 X 1 
HETATM 25 O O1N NDP . . . B 2 21.394 20.736 44.433 1 19.73 ? O1N NDP 301 X 1 
HETATM 26 O O2N NDP . . . B 2 22.819 21.177 46.543 1 20.01 ? O2N NDP 301 X 1 
HETATM 27 O O5D NDP . . . B 2 23.501 19.296 44.899 1 19.04 ? O5D NDP 301 X 1 
HETATM 28 C C5D NDP . . . B 2 24.762 19.05 45.507 1 18.05 ? C5D NDP 301 X 1 
HETATM 29 C C4D NDP . . . B 2 24.671 17.861 46.462 1 17.96 ? C4D NDP 301 X 1 
HETATM 30 O O4D NDP . . . B 2 24.314 16.677 45.738 1 17.95 ? O4D NDP 301 X 1 
HETATM 31 C C3D NDP . . . B 2 26.017 17.613 47.148 1 17.65 ? C3D NDP 301 X 1 
HETATM 32 O O3D NDP . . . B 2 25.788 17.137 48.47 1 17.82 ? O3D NDP 301 X 1 
HETATM 33 C C2D NDP . . . B 2 26.609 16.511 46.281 1 17.37 ? C2D NDP 301 X 1 
HETATM 34 O O2D NDP . . . B 2 27.536 15.7 46.993 1 17.38 ? O2D NDP 301 X 1 
HETATM 35 C C1D NDP . . . B 2 25.369 15.728 45.874 1 17.39 ? C1D NDP 301 X 1 
HETATM 36 N N1N NDP . . . B 2 25.577 14.98 44.622 1 17.4 ? N1N NDP 301 X 1 
HETATM 37 C C2N NDP . . . B 2 25.275 13.625 44.598 1 17.16 ? C2N NDP 301 X 1 
HETATM 38 C C3N NDP . . . B 2 25.414 12.912 43.41 1 17.09 ? C3N NDP 301 X 1 
HETATM 39 C C7N NDP . . . B 2 25.093 11.48 43.366 1 17.24 ? C7N NDP 301 X 1 
HETATM 40 O O7N NDP . . . B 2 25.096 10.821 42.321 1 16.71 ? O7N NDP 301 X 1 
HETATM 41 N N7N NDP . . . B 2 24.775 10.84 44.558 1 17.23 ? N7N NDP 301 X 1 
HETATM 42 C C4N NDP . . . B 2 25.855 13.578 42.259 1 16.98 ? C4N NDP 301 X 1 
HETATM 43 C C5N NDP . . . B 2 26.154 14.937 42.3 1 17.11 ? C5N NDP 301 X 1 
HETATM 44 C C6N NDP . . . B 2 26.013 15.646 43.482 1 17.28 ? C6N NDP 301 X 1 
HETATM 45 P P2B NDP . . . B 2 25.201 29.254 41.051 1 19.15 ? P2B NDP 301 X 1 
HETATM 46 O O1X NDP . . . B 2 24.533 29.383 42.394 1 19.27 ? O1X NDP 301 X 1 
HETATM 47 O O2X NDP . . . B 2 26.689 29.481 40.934 1 19.43 ? O2X NDP 301 X 1 
HETATM 48 O O3X NDP . . . B 2 24.493 30.18 40.111 1 18.72 ? O3X NDP 301 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#