data_3FRF # _model_server_result.job_id x4fD0G3jgTFV7bIqFzTseg _model_server_result.datetime_utc '2024-11-05 10:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3frf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3FRF # _exptl.entry_id 3FRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FRF _cell.length_a 79.279 _cell.length_b 79.279 _cell.length_c 108.165 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 3FRF _atom_sites.fract_transf_matrix[1][1] 0.012614 _atom_sites.fract_transf_matrix[1][2] 0.007283 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 XCF X 1 300 300 XCF XCP . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 2 HOH HOH . D 4 HOH X 3 161 3 HOH HOH . D 4 HOH X 4 162 4 HOH HOH . D 4 HOH X 5 163 5 HOH HOH . D 4 HOH X 6 164 6 HOH HOH . D 4 HOH X 7 165 7 HOH HOH . D 4 HOH X 8 166 8 HOH HOH . D 4 HOH X 9 167 9 HOH HOH . D 4 HOH X 10 168 10 HOH HOH . D 4 HOH X 11 169 11 HOH HOH . D 4 HOH X 12 170 12 HOH HOH . D 4 HOH X 13 171 13 HOH HOH . D 4 HOH X 14 172 14 HOH HOH . D 4 HOH X 15 173 15 HOH HOH . D 4 HOH X 16 174 16 HOH HOH . D 4 HOH X 17 175 17 HOH HOH . D 4 HOH X 18 176 18 HOH HOH . D 4 HOH X 19 177 19 HOH HOH . D 4 HOH X 20 178 20 HOH HOH . D 4 HOH X 21 179 21 HOH HOH . D 4 HOH X 22 180 22 HOH HOH . D 4 HOH X 23 181 23 HOH HOH . D 4 HOH X 24 182 24 HOH HOH . D 4 HOH X 25 183 25 HOH HOH . D 4 HOH X 26 184 26 HOH HOH . D 4 HOH X 27 185 27 HOH HOH . D 4 HOH X 28 186 28 HOH HOH . D 4 HOH X 29 187 29 HOH HOH . D 4 HOH X 30 188 30 HOH HOH . D 4 HOH X 31 189 31 HOH HOH . D 4 HOH X 32 190 32 HOH HOH . D 4 HOH X 33 191 33 HOH HOH . D 4 HOH X 34 192 34 HOH HOH . D 4 HOH X 35 193 35 HOH HOH . D 4 HOH X 36 194 36 HOH HOH . D 4 HOH X 37 195 37 HOH HOH . D 4 HOH X 38 196 38 HOH HOH . D 4 HOH X 39 197 39 HOH HOH . D 4 HOH X 40 198 40 HOH HOH . D 4 HOH X 41 199 41 HOH HOH . D 4 HOH X 42 200 42 HOH HOH . D 4 HOH X 43 201 43 HOH HOH . D 4 HOH X 44 202 44 HOH HOH . D 4 HOH X 45 203 45 HOH HOH . D 4 HOH X 46 204 46 HOH HOH . D 4 HOH X 47 205 47 HOH HOH . D 4 HOH X 48 206 48 HOH HOH . D 4 HOH X 49 207 50 HOH HOH . D 4 HOH X 50 208 51 HOH HOH . D 4 HOH X 51 209 52 HOH HOH . D 4 HOH X 52 210 53 HOH HOH . D 4 HOH X 53 211 54 HOH HOH . D 4 HOH X 54 212 55 HOH HOH . D 4 HOH X 55 213 56 HOH HOH . D 4 HOH X 56 214 57 HOH HOH . D 4 HOH X 57 215 58 HOH HOH . D 4 HOH X 58 216 59 HOH HOH . D 4 HOH X 59 217 60 HOH HOH . D 4 HOH X 60 218 61 HOH HOH . D 4 HOH X 61 219 62 HOH HOH . D 4 HOH X 62 220 63 HOH HOH . D 4 HOH X 63 221 64 HOH HOH . D 4 HOH X 64 222 65 HOH HOH . D 4 HOH X 65 223 66 HOH HOH . D 4 HOH X 66 224 67 HOH HOH . D 4 HOH X 67 225 68 HOH HOH . D 4 HOH X 68 226 69 HOH HOH . D 4 HOH X 69 227 70 HOH HOH . D 4 HOH X 70 228 71 HOH HOH . D 4 HOH X 71 229 72 HOH HOH . D 4 HOH X 72 230 73 HOH HOH . D 4 HOH X 73 231 74 HOH HOH . D 4 HOH X 74 232 75 HOH HOH . D 4 HOH X 75 233 76 HOH HOH . D 4 HOH X 76 234 77 HOH HOH . D 4 HOH X 77 235 78 HOH HOH . D 4 HOH X 78 236 79 HOH HOH . D 4 HOH X 79 237 80 HOH HOH . D 4 HOH X 80 238 81 HOH HOH . D 4 HOH X 81 239 82 HOH HOH . D 4 HOH X 82 240 83 HOH HOH . D 4 HOH X 83 241 84 HOH HOH . D 4 HOH X 84 242 85 HOH HOH . D 4 HOH X 85 243 86 HOH HOH . D 4 HOH X 86 244 87 HOH HOH . D 4 HOH X 87 245 88 HOH HOH . D 4 HOH X 88 246 89 HOH HOH . D 4 HOH X 89 247 90 HOH HOH . D 4 HOH X 90 248 91 HOH HOH . D 4 HOH X 91 249 92 HOH HOH . D 4 HOH X 92 250 93 HOH HOH . D 4 HOH X 93 251 94 HOH HOH . D 4 HOH X 94 252 95 HOH HOH . D 4 HOH X 95 253 96 HOH HOH . D 4 HOH X 96 254 97 HOH HOH . D 4 HOH X 97 255 98 HOH HOH . D 4 HOH X 98 256 99 HOH HOH . D 4 HOH X 99 257 100 HOH HOH . D 4 HOH X 100 258 101 HOH HOH . D 4 HOH X 101 259 102 HOH HOH . D 4 HOH X 102 260 103 HOH HOH . D 4 HOH X 103 261 104 HOH HOH . D 4 HOH X 104 262 105 HOH HOH . D 4 HOH X 105 263 106 HOH HOH . D 4 HOH X 106 264 107 HOH HOH . D 4 HOH X 107 265 108 HOH HOH . D 4 HOH X 108 266 109 HOH HOH . D 4 HOH X 109 267 110 HOH HOH . D 4 HOH X 110 268 111 HOH HOH . D 4 HOH X 111 269 112 HOH HOH . D 4 HOH X 112 270 113 HOH HOH . D 4 HOH X 113 271 114 HOH HOH . D 4 HOH X 114 272 115 HOH HOH . D 4 HOH X 115 273 116 HOH HOH . D 4 HOH X 116 274 117 HOH HOH . D 4 HOH X 117 275 118 HOH HOH . D 4 HOH X 118 276 119 HOH HOH . D 4 HOH X 119 277 120 HOH HOH . D 4 HOH X 120 278 121 HOH HOH . D 4 HOH X 121 279 122 HOH HOH . D 4 HOH X 122 280 123 HOH HOH . D 4 HOH X 123 281 124 HOH HOH . D 4 HOH X 124 282 125 HOH HOH . D 4 HOH X 125 283 126 HOH HOH . D 4 HOH X 126 284 127 HOH HOH . D 4 HOH X 127 285 128 HOH HOH . D 4 HOH X 128 286 129 HOH HOH . D 4 HOH X 129 287 130 HOH HOH . D 4 HOH X 130 288 131 HOH HOH . D 4 HOH X 131 289 132 HOH HOH . D 4 HOH X 132 290 133 HOH HOH . D 4 HOH X 133 291 134 HOH HOH . D 4 HOH X 134 292 135 HOH HOH . D 4 HOH X 135 293 136 HOH HOH . D 4 HOH X 136 294 137 HOH HOH . D 4 HOH X 137 295 138 HOH HOH . D 4 HOH X 138 296 139 HOH HOH . D 4 HOH X 139 297 140 HOH HOH . D 4 HOH X 140 298 141 HOH HOH . D 4 HOH X 141 299 142 HOH HOH . D 4 HOH X 142 302 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 24.014 21.55 42.384 1 48.99 ? PA NDP 301 X 1 HETATM 2 O O1A NDP . . . B 2 25.211 20.692 42.231 1 49.05 ? O1A NDP 301 X 1 HETATM 3 O O2A NDP . . . B 2 22.834 21.082 41.63 1 48.93 ? O2A NDP 301 X 1 HETATM 4 O O5B NDP . . . B 2 24.373 23.038 41.943 1 49.21 ? O5B NDP 301 X 1 HETATM 5 C C5B NDP . . . B 2 23.427 24.053 42.147 1 49.07 ? C5B NDP 301 X 1 HETATM 6 C C4B NDP . . . B 2 23.94 25.23 41.354 1 48.92 ? C4B NDP 301 X 1 HETATM 7 O O4B NDP . . . B 2 23.974 24.907 39.977 1 48.73 ? O4B NDP 301 X 1 HETATM 8 C C3B NDP . . . B 2 23.092 26.481 41.462 1 48.92 ? C3B NDP 301 X 1 HETATM 9 O O3B NDP . . . B 2 23.304 27.171 42.666 1 48.89 ? O3B NDP 301 X 1 HETATM 10 C C2B NDP . . . B 2 23.627 27.2 40.255 1 49.01 ? C2B NDP 301 X 1 HETATM 11 O O2B NDP . . . B 2 24.937 27.63 40.536 1 49.19 ? O2B NDP 301 X 1 HETATM 12 C C1B NDP . . . B 2 23.717 26.084 39.23 1 48.94 ? C1B NDP 301 X 1 HETATM 13 N N9A NDP . . . B 2 22.453 25.947 38.496 1 48.79 ? N9A NDP 301 X 1 HETATM 14 C C8A NDP . . . B 2 21.527 24.953 38.668 1 48.75 ? C8A NDP 301 X 1 HETATM 15 N N7A NDP . . . B 2 20.507 25.169 37.811 1 48.75 ? N7A NDP 301 X 1 HETATM 16 C C5A NDP . . . B 2 20.77 26.286 37.095 1 48.86 ? C5A NDP 301 X 1 HETATM 17 C C6A NDP . . . B 2 20.065 26.944 36.097 1 48.81 ? C6A NDP 301 X 1 HETATM 18 N N6A NDP . . . B 2 18.893 26.477 35.683 1 48.85 ? N6A NDP 301 X 1 HETATM 19 N N1A NDP . . . B 2 20.589 28.088 35.536 1 48.9 ? N1A NDP 301 X 1 HETATM 20 C C2A NDP . . . B 2 21.808 28.57 35.973 1 48.88 ? C2A NDP 301 X 1 HETATM 21 N N3A NDP . . . B 2 22.503 27.913 36.968 1 48.87 ? N3A NDP 301 X 1 HETATM 22 C C4A NDP . . . B 2 21.992 26.787 37.52 1 48.87 ? C4A NDP 301 X 1 HETATM 23 O O3 NDP . . . B 2 23.707 21.769 43.942 1 48.72 ? O3 NDP 301 X 1 HETATM 24 P PN NDP . . . B 2 22.703 21.056 44.966 1 48.03 ? PN NDP 301 X 1 HETATM 25 O O1N NDP . . . B 2 21.344 21.178 44.4 1 48.54 ? O1N NDP 301 X 1 HETATM 26 O O2N NDP . . . B 2 23.002 21.571 46.321 1 48.21 ? O2N NDP 301 X 1 HETATM 27 O O5D NDP . . . B 2 23.172 19.52 44.926 1 47.19 ? O5D NDP 301 X 1 HETATM 28 C C5D NDP . . . B 2 24.416 19.189 45.492 1 46.37 ? C5D NDP 301 X 1 HETATM 29 C C4D NDP . . . B 2 24.28 17.92 46.311 1 45.84 ? C4D NDP 301 X 1 HETATM 30 O O4D NDP . . . B 2 24.165 16.808 45.447 1 45.44 ? O4D NDP 301 X 1 HETATM 31 C C3D NDP . . . B 2 25.499 17.672 47.176 1 45.53 ? C3D NDP 301 X 1 HETATM 32 O O3D NDP . . . B 2 25.086 17.254 48.453 1 45.68 ? O3D NDP 301 X 1 HETATM 33 C C2D NDP . . . B 2 26.238 16.558 46.479 1 45.14 ? C2D NDP 301 X 1 HETATM 34 O O2D NDP . . . B 2 26.966 15.788 47.403 1 45.22 ? O2D NDP 301 X 1 HETATM 35 C C1D NDP . . . B 2 25.086 15.812 45.832 1 44.87 ? C1D NDP 301 X 1 HETATM 36 N N1N NDP . . . B 2 25.424 15.026 44.638 1 44.82 ? N1N NDP 301 X 1 HETATM 37 C C2N NDP . . . B 2 25.18 13.688 44.677 1 44.31 ? C2N NDP 301 X 1 HETATM 38 C C3N NDP . . . B 2 25.457 12.902 43.576 1 44.08 ? C3N NDP 301 X 1 HETATM 39 C C7N NDP . . . B 2 25.038 11.468 43.611 1 43.76 ? C7N NDP 301 X 1 HETATM 40 O O7N NDP . . . B 2 24.777 10.796 42.402 1 43.29 ? O7N NDP 301 X 1 HETATM 41 N N7N NDP . . . B 2 24.93 10.884 44.805 1 43.59 ? N7N NDP 301 X 1 HETATM 42 C C4N NDP . . . B 2 25.976 13.479 42.421 1 44.42 ? C4N NDP 301 X 1 HETATM 43 C C5N NDP . . . B 2 26.21 14.849 42.388 1 44.33 ? C5N NDP 301 X 1 HETATM 44 C C6N NDP . . . B 2 25.923 15.618 43.508 1 44.46 ? C6N NDP 301 X 1 HETATM 45 P P2B NDP . . . B 2 25.297 29.134 40.989 1 49.47 ? P2B NDP 301 X 1 HETATM 46 O O1X NDP . . . B 2 24.557 30.079 40.071 1 48.38 ? O1X NDP 301 X 1 HETATM 47 O O2X NDP . . . B 2 26.797 29.285 40.842 1 49.54 ? O2X NDP 301 X 1 HETATM 48 O O3X NDP . . . B 2 24.911 29.342 42.436 1 48.84 ? O3X NDP 301 X 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #