data_3FRJ # _model_server_result.job_id FFMoPtR6Tn5fgtULTN_sHg _model_server_result.datetime_utc '2024-12-22 01:04:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3frj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3FRJ # _exptl.entry_id 3FRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FRJ _cell.length_a 104.917 _cell.length_b 104.917 _cell.length_c 134.784 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 89.856 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 302 n n PA O2A NAP sing 303 n n PA O5B NAP sing 304 n n PA O3 NAP sing 305 n n O2A HOA2 NAP sing 306 n n O5B C5B NAP sing 307 n n C5B C4B NAP sing 308 n n C5B H51A NAP sing 309 n n C5B H52A NAP sing 310 n n C4B O4B NAP sing 311 n n C4B C3B NAP sing 312 n n C4B H4B NAP sing 313 n n O4B C1B NAP sing 314 n n C3B O3B NAP sing 315 n n C3B C2B NAP sing 316 n n C3B H3B NAP sing 317 n n O3B HO3A NAP sing 318 n n C2B O2B NAP sing 319 n n C2B C1B NAP sing 320 n n C2B H2B NAP sing 321 n n O2B P2B NAP sing 322 n n C1B N9A NAP sing 323 n n C1B H1B NAP sing 324 n n N9A C8A NAP sing 325 n y N9A C4A NAP sing 326 n y C8A N7A NAP doub 327 n y C8A H8A NAP sing 328 n n N7A C5A NAP sing 329 n y C5A C6A NAP sing 330 n y C5A C4A NAP doub 331 n y C6A N6A NAP sing 332 n n C6A N1A NAP doub 333 n y N6A H61A NAP sing 334 n n N6A H62A NAP sing 335 n n N1A C2A NAP sing 336 n y C2A N3A NAP doub 337 n y C2A H2A NAP sing 338 n n N3A C4A NAP sing 339 n y O3 PN NAP sing 340 n n PN O1N NAP doub 341 n n PN O2N NAP sing 342 n n PN O5D NAP sing 343 n n O5D C5D NAP sing 344 n n C5D C4D NAP sing 345 n n C5D H51N NAP sing 346 n n C5D H52N NAP sing 347 n n C4D O4D NAP sing 348 n n C4D C3D NAP sing 349 n n C4D H4D NAP sing 350 n n O4D C1D NAP sing 351 n n C3D O3D NAP sing 352 n n C3D C2D NAP sing 353 n n C3D H3D NAP sing 354 n n O3D HO3N NAP sing 355 n n C2D O2D NAP sing 356 n n C2D C1D NAP sing 357 n n C2D H2D NAP sing 358 n n O2D HO2N NAP sing 359 n n C1D N1N NAP sing 360 n n C1D H1D NAP sing 361 n n N1N C2N NAP sing 362 n y N1N C6N NAP doub 363 n y C2N C3N NAP doub 364 n y C2N H2N NAP sing 365 n n C3N C7N NAP sing 366 n n C3N C4N NAP sing 367 n y C7N O7N NAP doub 368 n n C7N N7N NAP sing 369 n n N7N H71N NAP sing 370 n n N7N H72N NAP sing 371 n n C4N C5N NAP doub 372 n y C4N H4N NAP sing 373 n n C5N C6N NAP sing 374 n y C5N H5N NAP sing 375 n n C6N H6N NAP sing 376 n n P2B O1X NAP doub 377 n n P2B O2X NAP sing 378 n n P2B O3X NAP sing 379 n n O2X HOP2 NAP sing 380 n n O3X HOP3 NAP sing 381 n n # _atom_sites.entry_id 3FRJ _atom_sites.fract_transf_matrix[1][1] 0.009531 _atom_sites.fract_transf_matrix[1][2] 0.005503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1 1 NAP NAP . D 3 A49 B 1 2 2 A49 A48 . E 2 NAP B 1 1 1 NAP NAP . F 4 HOH A 1 293 2 HOH HOH . F 4 HOH A 2 294 5 HOH HOH . F 4 HOH A 3 295 9 HOH HOH . F 4 HOH A 4 296 10 HOH HOH . F 4 HOH A 5 297 11 HOH HOH . F 4 HOH A 6 298 13 HOH HOH . F 4 HOH A 7 299 15 HOH HOH . F 4 HOH A 8 300 17 HOH HOH . F 4 HOH A 9 301 20 HOH HOH . F 4 HOH A 10 302 21 HOH HOH . F 4 HOH A 11 303 24 HOH HOH . F 4 HOH A 12 304 28 HOH HOH . F 4 HOH A 13 305 30 HOH HOH . F 4 HOH A 14 306 31 HOH HOH . F 4 HOH A 15 307 37 HOH HOH . F 4 HOH A 16 308 38 HOH HOH . F 4 HOH A 17 309 43 HOH HOH . F 4 HOH A 18 310 44 HOH HOH . F 4 HOH A 19 311 46 HOH HOH . F 4 HOH A 20 312 49 HOH HOH . F 4 HOH A 21 313 50 HOH HOH . F 4 HOH A 22 314 51 HOH HOH . F 4 HOH A 23 315 54 HOH HOH . F 4 HOH A 24 316 55 HOH HOH . F 4 HOH A 25 317 56 HOH HOH . F 4 HOH A 26 318 57 HOH HOH . F 4 HOH A 27 319 59 HOH HOH . F 4 HOH A 28 320 61 HOH HOH . F 4 HOH A 29 321 62 HOH HOH . F 4 HOH A 30 322 63 HOH HOH . F 4 HOH A 31 323 64 HOH HOH . F 4 HOH A 32 324 67 HOH HOH . F 4 HOH A 33 325 71 HOH HOH . F 4 HOH A 34 326 72 HOH HOH . F 4 HOH A 35 327 73 HOH HOH . F 4 HOH A 36 328 76 HOH HOH . F 4 HOH A 37 329 78 HOH HOH . F 4 HOH A 38 330 81 HOH HOH . F 4 HOH A 39 331 85 HOH HOH . F 4 HOH A 40 332 86 HOH HOH . F 4 HOH A 41 333 88 HOH HOH . F 4 HOH A 42 334 89 HOH HOH . F 4 HOH A 43 335 91 HOH HOH . F 4 HOH A 44 336 95 HOH HOH . F 4 HOH A 45 337 96 HOH HOH . F 4 HOH A 46 338 97 HOH HOH . F 4 HOH A 47 339 100 HOH HOH . F 4 HOH A 48 340 101 HOH HOH . F 4 HOH A 49 341 104 HOH HOH . F 4 HOH A 50 342 105 HOH HOH . F 4 HOH A 51 343 107 HOH HOH . F 4 HOH A 52 344 108 HOH HOH . F 4 HOH A 53 345 109 HOH HOH . F 4 HOH A 54 346 110 HOH HOH . F 4 HOH A 55 347 119 HOH HOH . F 4 HOH A 56 348 124 HOH HOH . F 4 HOH A 57 349 125 HOH HOH . F 4 HOH A 58 350 129 HOH HOH . F 4 HOH A 59 351 130 HOH HOH . F 4 HOH A 60 352 131 HOH HOH . F 4 HOH A 61 353 132 HOH HOH . F 4 HOH A 62 354 133 HOH HOH . F 4 HOH A 63 355 134 HOH HOH . F 4 HOH A 64 356 135 HOH HOH . F 4 HOH A 65 357 137 HOH HOH . F 4 HOH A 66 358 138 HOH HOH . F 4 HOH A 67 359 139 HOH HOH . F 4 HOH A 68 360 140 HOH HOH . F 4 HOH A 69 361 141 HOH HOH . F 4 HOH A 70 362 143 HOH HOH . F 4 HOH A 71 363 153 HOH HOH . F 4 HOH A 72 364 154 HOH HOH . F 4 HOH A 73 365 155 HOH HOH . F 4 HOH A 74 366 156 HOH HOH . F 4 HOH A 75 367 157 HOH HOH . F 4 HOH A 76 368 158 HOH HOH . F 4 HOH A 77 369 159 HOH HOH . F 4 HOH A 78 370 160 HOH HOH . F 4 HOH A 79 371 161 HOH HOH . F 4 HOH A 80 372 162 HOH HOH . F 4 HOH A 81 373 163 HOH HOH . F 4 HOH A 82 374 164 HOH HOH . F 4 HOH A 83 375 165 HOH HOH . F 4 HOH A 84 376 180 HOH HOH . G 4 HOH B 1 293 1 HOH HOH . G 4 HOH B 2 294 3 HOH HOH . G 4 HOH B 3 295 4 HOH HOH . G 4 HOH B 4 296 6 HOH HOH . G 4 HOH B 5 297 7 HOH HOH . G 4 HOH B 6 298 8 HOH HOH . G 4 HOH B 7 299 12 HOH HOH . G 4 HOH B 8 300 14 HOH HOH . G 4 HOH B 9 301 16 HOH HOH . G 4 HOH B 10 302 18 HOH HOH . G 4 HOH B 11 303 19 HOH HOH . G 4 HOH B 12 304 23 HOH HOH . G 4 HOH B 13 305 25 HOH HOH . G 4 HOH B 14 306 26 HOH HOH . G 4 HOH B 15 307 29 HOH HOH . G 4 HOH B 16 308 32 HOH HOH . G 4 HOH B 17 309 34 HOH HOH . G 4 HOH B 18 310 35 HOH HOH . G 4 HOH B 19 311 36 HOH HOH . G 4 HOH B 20 312 39 HOH HOH . G 4 HOH B 21 313 40 HOH HOH . G 4 HOH B 22 314 41 HOH HOH . G 4 HOH B 23 315 42 HOH HOH . G 4 HOH B 24 316 45 HOH HOH . G 4 HOH B 25 317 47 HOH HOH . G 4 HOH B 26 318 48 HOH HOH . G 4 HOH B 27 319 52 HOH HOH . G 4 HOH B 28 320 53 HOH HOH . G 4 HOH B 29 321 58 HOH HOH . G 4 HOH B 30 322 60 HOH HOH . G 4 HOH B 31 323 65 HOH HOH . G 4 HOH B 32 324 66 HOH HOH . G 4 HOH B 33 325 68 HOH HOH . G 4 HOH B 34 326 69 HOH HOH . G 4 HOH B 35 327 70 HOH HOH . G 4 HOH B 36 328 74 HOH HOH . G 4 HOH B 37 329 75 HOH HOH . G 4 HOH B 38 330 77 HOH HOH . G 4 HOH B 39 331 79 HOH HOH . G 4 HOH B 40 332 80 HOH HOH . G 4 HOH B 41 333 82 HOH HOH . G 4 HOH B 42 334 83 HOH HOH . G 4 HOH B 43 335 84 HOH HOH . G 4 HOH B 44 336 87 HOH HOH . G 4 HOH B 45 337 90 HOH HOH . G 4 HOH B 46 338 92 HOH HOH . G 4 HOH B 47 339 93 HOH HOH . G 4 HOH B 48 340 94 HOH HOH . G 4 HOH B 49 341 98 HOH HOH . G 4 HOH B 50 342 99 HOH HOH . G 4 HOH B 51 343 102 HOH HOH . G 4 HOH B 52 344 103 HOH HOH . G 4 HOH B 53 345 106 HOH HOH . G 4 HOH B 54 346 112 HOH HOH . G 4 HOH B 55 347 113 HOH HOH . G 4 HOH B 56 348 114 HOH HOH . G 4 HOH B 57 349 115 HOH HOH . G 4 HOH B 58 350 116 HOH HOH . G 4 HOH B 59 351 117 HOH HOH . G 4 HOH B 60 352 118 HOH HOH . G 4 HOH B 61 353 120 HOH HOH . G 4 HOH B 62 354 121 HOH HOH . G 4 HOH B 63 355 122 HOH HOH . G 4 HOH B 64 356 136 HOH HOH . G 4 HOH B 65 357 146 HOH HOH . G 4 HOH B 66 358 149 HOH HOH . G 4 HOH B 67 359 150 HOH HOH . G 4 HOH B 68 360 151 HOH HOH . G 4 HOH B 69 361 166 HOH HOH . G 4 HOH B 70 362 167 HOH HOH . G 4 HOH B 71 363 168 HOH HOH . G 4 HOH B 72 364 169 HOH HOH . G 4 HOH B 73 365 170 HOH HOH . G 4 HOH B 74 366 171 HOH HOH . G 4 HOH B 75 367 172 HOH HOH . G 4 HOH B 76 368 173 HOH HOH . G 4 HOH B 77 369 174 HOH HOH . G 4 HOH B 78 370 175 HOH HOH . G 4 HOH B 79 371 176 HOH HOH . G 4 HOH B 80 372 177 HOH HOH . G 4 HOH B 81 373 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 68.565 16.412 71.822 1 44.44 ? PA NAP 1 A 1 HETATM 2 O O1A NAP . . . C 2 69.52 15.486 72.496 1 42.32 ? O1A NAP 1 A 1 HETATM 3 O O2A NAP . . . C 2 67.413 16.921 72.53 1 40.78 ? O2A NAP 1 A 1 HETATM 4 O O5B NAP . . . C 2 69.344 17.627 71.169 1 40.31 ? O5B NAP 1 A 1 HETATM 5 C C5B NAP . . . C 2 68.657 18.667 70.465 1 32.32 ? C5B NAP 1 A 1 HETATM 6 C C4B NAP . . . C 2 69.832 19.596 70.305 1 32.79 ? C4B NAP 1 A 1 HETATM 7 O O4B NAP . . . C 2 69.29 20.8 69.801 1 38.31 ? O4B NAP 1 A 1 HETATM 8 C C3B NAP . . . C 2 70.463 19.947 71.68 1 35.16 ? C3B NAP 1 A 1 HETATM 9 O O3B NAP . . . C 2 71.843 20.249 71.595 1 37.5 ? O3B NAP 1 A 1 HETATM 10 C C2B NAP . . . C 2 69.832 21.282 71.993 1 37.99 ? C2B NAP 1 A 1 HETATM 11 O O2B NAP . . . C 2 70.752 22.057 72.757 1 45.73 ? O2B NAP 1 A 1 HETATM 12 C C1B NAP . . . C 2 69.616 21.944 70.613 1 36.83 ? C1B NAP 1 A 1 HETATM 13 N N9A NAP . . . C 2 68.54 22.945 70.733 1 31.02 ? N9A NAP 1 A 1 HETATM 14 C C8A NAP . . . C 2 67.316 22.796 71.407 1 29.05 ? C8A NAP 1 A 1 HETATM 15 N N7A NAP . . . C 2 66.644 23.991 71.287 1 29.86 ? N7A NAP 1 A 1 HETATM 16 C C5A NAP . . . C 2 67.459 24.871 70.573 1 26.12 ? C5A NAP 1 A 1 HETATM 17 C C6A NAP . . . C 2 67.278 26.171 70.183 1 31.11 ? C6A NAP 1 A 1 HETATM 18 N N6A NAP . . . C 2 66.155 26.888 70.473 1 33.12 ? N6A NAP 1 A 1 HETATM 19 N N1A NAP . . . C 2 68.229 26.765 69.476 1 32.2 ? N1A NAP 1 A 1 HETATM 20 C C2A NAP . . . C 2 69.399 26.148 69.147 1 32.73 ? C2A NAP 1 A 1 HETATM 21 N N3A NAP . . . C 2 69.58 24.874 69.53 1 34.57 ? N3A NAP 1 A 1 HETATM 22 C C4A NAP . . . C 2 68.616 24.247 70.252 1 30.63 ? C4A NAP 1 A 1 HETATM 23 O O3 NAP . . . C 2 67.906 15.563 70.527 1 43.12 ? O3 NAP 1 A 1 HETATM 24 P PN NAP . . . C 2 68.445 14.253 69.76 1 39.44 ? PN NAP 1 A 1 HETATM 25 O O1N NAP . . . C 2 69.88 14.247 69.746 1 33.03 ? O1N NAP 1 A 1 HETATM 26 O O2N NAP . . . C 2 67.629 13.075 70.232 1 34.87 ? O2N NAP 1 A 1 HETATM 27 O O5D NAP . . . C 2 68.04 14.666 68.185 1 40.8 ? O5D NAP 1 A 1 HETATM 28 C C5D NAP . . . C 2 68.974 15.321 67.299 1 35.83 ? C5D NAP 1 A 1 HETATM 29 C C4D NAP . . . C 2 68.363 15.28 65.872 1 38.39 ? C4D NAP 1 A 1 HETATM 30 O O4D NAP . . . C 2 68.019 13.91 65.624 1 36.89 ? O4D NAP 1 A 1 HETATM 31 C C3D NAP . . . C 2 67.052 16.027 65.768 1 37.19 ? C3D NAP 1 A 1 HETATM 32 O O3D NAP . . . C 2 66.989 16.656 64.531 1 38.4 ? O3D NAP 1 A 1 HETATM 33 C C2D NAP . . . C 2 66.022 14.907 65.839 1 35.13 ? C2D NAP 1 A 1 HETATM 34 O O2D NAP . . . C 2 64.775 15.189 65.255 1 39.59 ? O2D NAP 1 A 1 HETATM 35 C C1D NAP . . . C 2 66.691 13.732 65.224 1 32.14 ? C1D NAP 1 A 1 HETATM 36 N N1N NAP . . . C 2 66.024 12.489 65.619 1 36.41 ? N1N NAP 1 A 1 HETATM 37 C C2N NAP . . . C 2 66.24 11.895 66.831 1 40.59 ? C2N NAP 1 A 1 HETATM 38 C C3N NAP . . . C 2 65.507 10.786 67.258 1 41.62 ? C3N NAP 1 A 1 HETATM 39 C C7N NAP . . . C 2 65.822 10.156 68.593 1 42.13 ? C7N NAP 1 A 1 HETATM 40 O O7N NAP . . . C 2 65.02 9.099 69.008 1 40.98 ? O7N NAP 1 A 1 HETATM 41 N N7N NAP . . . C 2 66.838 10.577 69.339 1 40.17 ? N7N NAP 1 A 1 HETATM 42 C C4N NAP . . . C 2 64.577 10.174 66.404 1 41.38 ? C4N NAP 1 A 1 HETATM 43 C C5N NAP . . . C 2 64.331 10.801 65.167 1 43.25 ? C5N NAP 1 A 1 HETATM 44 C C6N NAP . . . C 2 65.063 11.956 64.808 1 40.79 ? C6N NAP 1 A 1 HETATM 45 P P2B NAP . . . C 2 70.303 23.273 73.782 1 42.45 ? P2B NAP 1 A 1 HETATM 46 O O1X NAP . . . C 2 71.597 23.423 74.489 1 43.83 ? O1X NAP 1 A 1 HETATM 47 O O2X NAP . . . C 2 69.962 24.517 73.046 1 44.27 ? O2X NAP 1 A 1 HETATM 48 O O3X NAP . . . C 2 69.038 23.02 74.577 1 35.43 ? O3X NAP 1 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 48 #