data_3FRO # _model_server_result.job_id AqZMJRzIUmauQyqpxyOCJw _model_server_result.datetime_utc '2024-11-17 00:22:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":438}' # _entry.id 3FRO # _exptl.entry_id 3FRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.141 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,5-anhydro-D-fructose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FRO _cell.length_a 74.998 _cell.length_b 139.913 _cell.length_c 159.414 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 221 1_555 A SG CYS 352 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 223 B CYS 221 1_555 B SG CYS 352 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 C SG CYS 223 C CYS 221 1_555 C SG CYS 352 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C6 H10 O5' _chem_comp.formula_weight 162.141 _chem_comp.id NHF _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-anhydro-D-fructose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 NHF sing 237 n n C6 C5 NHF sing 238 n n C6 O6 NHF sing 239 n n C5 C4 NHF sing 240 n n C5 O5 NHF sing 241 n n C4 C3 NHF sing 242 n n O3 C3 NHF sing 243 n n C3 C2 NHF sing 244 n n C2 C1 NHF sing 245 n n C2 O2 NHF doub 246 n n C1 O5 NHF sing 247 n n O4 HO4 NHF sing 248 n n C6 H6 NHF sing 249 n n C6 H6A NHF sing 250 n n C5 H5 NHF sing 251 n n C4 H4 NHF sing 252 n n O3 HO3 NHF sing 253 n n C3 H3 NHF sing 254 n n C1 H1 NHF sing 255 n n C1 H1A NHF sing 256 n n O6 HO6 NHF sing 257 n n # _atom_sites.entry_id 3FRO _atom_sites.fract_transf_matrix[1][1] 0.013334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRS A 1 7360 7360 TRS TRS . E 2 TRS A 1 7361 7361 TRS TRS . F 3 PO4 A 1 8000 8000 PO4 PO4 . G 4 NHF B 1 438 1 NHF ENO . H 2 TRS B 1 7362 7362 TRS TRS . I 3 PO4 B 1 8001 8001 PO4 PO4 . J 3 PO4 C 1 8002 8002 PO4 PO4 . K 5 HOH A 1 438 1 HOH HOH . K 5 HOH A 2 439 2 HOH HOH . K 5 HOH A 3 440 3 HOH HOH . K 5 HOH A 4 442 5 HOH HOH . K 5 HOH A 5 444 7 HOH HOH . K 5 HOH A 6 448 11 HOH HOH . K 5 HOH A 7 460 23 HOH HOH . K 5 HOH A 8 461 24 HOH HOH . K 5 HOH A 9 463 26 HOH HOH . K 5 HOH A 10 465 28 HOH HOH . K 5 HOH A 11 466 29 HOH HOH . K 5 HOH A 12 467 30 HOH HOH . K 5 HOH A 13 470 33 HOH HOH . K 5 HOH A 14 471 34 HOH HOH . K 5 HOH A 15 472 35 HOH HOH . K 5 HOH A 16 473 36 HOH HOH . K 5 HOH A 17 475 38 HOH HOH . K 5 HOH A 18 478 41 HOH HOH . K 5 HOH A 19 484 47 HOH HOH . K 5 HOH A 20 485 48 HOH HOH . K 5 HOH A 21 487 50 HOH HOH . K 5 HOH A 22 490 53 HOH HOH . K 5 HOH A 23 492 55 HOH HOH . K 5 HOH A 24 496 59 HOH HOH . K 5 HOH A 25 498 61 HOH HOH . K 5 HOH A 26 499 62 HOH HOH . K 5 HOH A 27 500 63 HOH HOH . K 5 HOH A 28 504 67 HOH HOH . K 5 HOH A 29 506 69 HOH HOH . K 5 HOH A 30 509 72 HOH HOH . K 5 HOH A 31 513 76 HOH HOH . K 5 HOH A 32 515 78 HOH HOH . K 5 HOH A 33 517 80 HOH HOH . K 5 HOH A 34 521 84 HOH HOH . K 5 HOH A 35 526 89 HOH HOH . K 5 HOH A 36 527 90 HOH HOH . K 5 HOH A 37 528 91 HOH HOH . K 5 HOH A 38 529 92 HOH HOH . K 5 HOH A 39 530 93 HOH HOH . K 5 HOH A 40 532 95 HOH HOH . L 5 HOH B 1 447 10 HOH HOH . L 5 HOH B 2 449 12 HOH HOH . L 5 HOH B 3 452 15 HOH HOH . L 5 HOH B 4 454 17 HOH HOH . L 5 HOH B 5 455 18 HOH HOH . L 5 HOH B 6 456 19 HOH HOH . L 5 HOH B 7 457 20 HOH HOH . L 5 HOH B 8 459 22 HOH HOH . L 5 HOH B 9 464 27 HOH HOH . L 5 HOH B 10 468 31 HOH HOH . L 5 HOH B 11 474 37 HOH HOH . L 5 HOH B 12 476 39 HOH HOH . L 5 HOH B 13 477 40 HOH HOH . L 5 HOH B 14 481 44 HOH HOH . L 5 HOH B 15 482 45 HOH HOH . L 5 HOH B 16 493 56 HOH HOH . L 5 HOH B 17 501 64 HOH HOH . L 5 HOH B 18 503 66 HOH HOH . L 5 HOH B 19 505 68 HOH HOH . L 5 HOH B 20 507 70 HOH HOH . L 5 HOH B 21 508 71 HOH HOH . L 5 HOH B 22 514 77 HOH HOH . L 5 HOH B 23 516 79 HOH HOH . L 5 HOH B 24 518 81 HOH HOH . L 5 HOH B 25 519 82 HOH HOH . L 5 HOH B 26 520 83 HOH HOH . L 5 HOH B 27 523 86 HOH HOH . L 5 HOH B 28 524 87 HOH HOH . L 5 HOH B 29 525 88 HOH HOH . L 5 HOH B 30 531 94 HOH HOH . M 5 HOH C 1 441 4 HOH HOH . M 5 HOH C 2 443 6 HOH HOH . M 5 HOH C 3 445 8 HOH HOH . M 5 HOH C 4 446 9 HOH HOH . M 5 HOH C 5 450 13 HOH HOH . M 5 HOH C 6 451 14 HOH HOH . M 5 HOH C 7 453 16 HOH HOH . M 5 HOH C 8 458 21 HOH HOH . M 5 HOH C 9 462 25 HOH HOH . M 5 HOH C 10 469 32 HOH HOH . M 5 HOH C 11 479 42 HOH HOH . M 5 HOH C 12 480 43 HOH HOH . M 5 HOH C 13 483 46 HOH HOH . M 5 HOH C 14 486 49 HOH HOH . M 5 HOH C 15 488 51 HOH HOH . M 5 HOH C 16 489 52 HOH HOH . M 5 HOH C 17 491 54 HOH HOH . M 5 HOH C 18 494 57 HOH HOH . M 5 HOH C 19 495 58 HOH HOH . M 5 HOH C 20 497 60 HOH HOH . M 5 HOH C 21 502 65 HOH HOH . M 5 HOH C 22 510 73 HOH HOH . M 5 HOH C 23 511 74 HOH HOH . M 5 HOH C 24 512 75 HOH HOH . M 5 HOH C 25 522 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 NHF . . . G 4 36.74 47.005 -62.45 1 67.17 ? O4 NHF 438 B 1 HETATM 2 C C6 NHF . . . G 4 36.466 49.361 -60.379 1 66.07 ? C6 NHF 438 B 1 HETATM 3 C C5 NHF . . . G 4 35.442 48.607 -61.22 1 66.37 ? C5 NHF 438 B 1 HETATM 4 C C4 NHF . . . G 4 36.051 48.252 -62.576 1 66.6 ? C4 NHF 438 B 1 HETATM 5 O O3 NHF . . . G 4 35.724 47.886 -64.921 1 66.43 ? O3 NHF 438 B 1 HETATM 6 C C3 NHF . . . G 4 35.024 48.138 -63.697 1 66.47 ? C3 NHF 438 B 1 HETATM 7 C C2 NHF . . . G 4 34.224 49.41 -63.768 1 66.45 ? C2 NHF 438 B 1 HETATM 8 C C1 NHF . . . G 4 33.86 49.992 -62.62 1 66.51 ? C1 NHF 438 B 1 HETATM 9 O O2 NHF . . . G 4 33.877 49.971 -64.926 1 66.08 ? O2 NHF 438 B 1 HETATM 10 O O6 NHF . . . G 4 36.128 49.247 -58.996 1 65.84 ? O6 NHF 438 B 1 HETATM 11 O O5 NHF . . . G 4 34.254 49.393 -61.352 1 66.65 ? O5 NHF 438 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #