data_3FSK # _model_server_result.job_id UlGTpG_uKkHnrd8XPqRHTQ _model_server_result.datetime_utc '2025-01-02 23:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":450}' # _entry.id 3FSK # _exptl.entry_id 3FSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.837 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2-chlorophenyl)-7-[(trans-4-hydroxycyclohexyl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FSK _cell.length_a 45.4 _cell.length_b 85.4 _cell.length_c 125.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 Cl N5 O2' _chem_comp.formula_weight 373.837 _chem_comp.id RO6 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2-chlorophenyl)-7-[(trans-4-hydroxycyclohexyl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C1 RO6 doub 277 n y C1 N2 RO6 sing 278 n n C1 N11 RO6 sing 279 n y C12 N11 RO6 doub 280 n y C14 C12 RO6 sing 281 n y C12 N15 RO6 sing 282 n n C16 N15 RO6 sing 283 n n N15 HN15 RO6 sing 284 n n N17 C16 RO6 sing 285 n n C16 O19 RO6 doub 286 n n C18 N17 RO6 sing 287 n n C20 N17 RO6 sing 288 n n C21 C20 RO6 doub 289 n y C20 C25 RO6 sing 290 n y C22 C21 RO6 sing 291 n y C21 H21 RO6 sing 292 n n C22 C23 RO6 doub 293 n y C22 H22 RO6 sing 294 n n C23 C24 RO6 sing 295 n y C23 H23 RO6 sing 296 n n C24 C25 RO6 doub 297 n y C24 H24 RO6 sing 298 n n C25 CL26 RO6 sing 299 n n C18 C14 RO6 sing 300 n n C18 H18 RO6 sing 301 n n C18 H18A RO6 sing 302 n n C13 C14 RO6 doub 303 n y C13 N10 RO6 sing 304 n y C13 H13 RO6 sing 305 n n N2 C3 RO6 sing 306 n n N2 HN2 RO6 sing 307 n n C4 C3 RO6 sing 308 n n C3 C8 RO6 sing 309 n n C3 H3 RO6 sing 310 n n C4 C5 RO6 sing 311 n n C4 H4 RO6 sing 312 n n C4 H4A RO6 sing 313 n n C5 C6 RO6 sing 314 n n C5 H5 RO6 sing 315 n n C5 H5A RO6 sing 316 n n C6 O9 RO6 sing 317 n n C6 C7 RO6 sing 318 n n C6 H6 RO6 sing 319 n n O9 HO9 RO6 sing 320 n n C8 C7 RO6 sing 321 n n C7 H7 RO6 sing 322 n n C7 H7A RO6 sing 323 n n C8 H8 RO6 sing 324 n n C8 H8A RO6 sing 325 n n # _atom_sites.entry_id 3FSK _atom_sites.fract_transf_matrix[1][1] 0.022026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RO6 A 1 450 450 RO6 RO6 . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 507 507 HOH HOH . C 3 HOH A 7 508 508 HOH HOH . C 3 HOH A 8 509 509 HOH HOH . C 3 HOH A 9 510 510 HOH HOH . C 3 HOH A 10 511 511 HOH HOH . C 3 HOH A 11 513 513 HOH HOH . C 3 HOH A 12 514 514 HOH HOH . C 3 HOH A 13 515 515 HOH HOH . C 3 HOH A 14 516 516 HOH HOH . C 3 HOH A 15 517 517 HOH HOH . C 3 HOH A 16 518 518 HOH HOH . C 3 HOH A 17 519 519 HOH HOH . C 3 HOH A 18 520 520 HOH HOH . C 3 HOH A 19 521 521 HOH HOH . C 3 HOH A 20 522 522 HOH HOH . C 3 HOH A 21 523 523 HOH HOH . C 3 HOH A 22 524 524 HOH HOH . C 3 HOH A 23 525 525 HOH HOH . C 3 HOH A 24 527 527 HOH HOH . C 3 HOH A 25 528 528 HOH HOH . C 3 HOH A 26 529 529 HOH HOH . C 3 HOH A 27 530 530 HOH HOH . C 3 HOH A 28 531 531 HOH HOH . C 3 HOH A 29 532 532 HOH HOH . C 3 HOH A 30 533 533 HOH HOH . C 3 HOH A 31 534 534 HOH HOH . C 3 HOH A 32 535 535 HOH HOH . C 3 HOH A 33 536 536 HOH HOH . C 3 HOH A 34 539 539 HOH HOH . C 3 HOH A 35 540 540 HOH HOH . C 3 HOH A 36 542 542 HOH HOH . C 3 HOH A 37 543 543 HOH HOH . C 3 HOH A 38 545 545 HOH HOH . C 3 HOH A 39 546 546 HOH HOH . C 3 HOH A 40 547 547 HOH HOH . C 3 HOH A 41 548 548 HOH HOH . C 3 HOH A 42 549 549 HOH HOH . C 3 HOH A 43 550 550 HOH HOH . C 3 HOH A 44 551 551 HOH HOH . C 3 HOH A 45 553 553 HOH HOH . C 3 HOH A 46 554 554 HOH HOH . C 3 HOH A 47 555 555 HOH HOH . C 3 HOH A 48 556 556 HOH HOH . C 3 HOH A 49 557 557 HOH HOH . C 3 HOH A 50 558 558 HOH HOH . C 3 HOH A 51 560 560 HOH HOH . C 3 HOH A 52 561 561 HOH HOH . C 3 HOH A 53 562 562 HOH HOH . C 3 HOH A 54 563 563 HOH HOH . C 3 HOH A 55 565 565 HOH HOH . C 3 HOH A 56 569 569 HOH HOH . C 3 HOH A 57 570 570 HOH HOH . C 3 HOH A 58 571 571 HOH HOH . C 3 HOH A 59 572 572 HOH HOH . C 3 HOH A 60 574 574 HOH HOH . C 3 HOH A 61 575 575 HOH HOH . C 3 HOH A 62 576 576 HOH HOH . C 3 HOH A 63 577 577 HOH HOH . C 3 HOH A 64 578 578 HOH HOH . C 3 HOH A 65 579 579 HOH HOH . C 3 HOH A 66 580 580 HOH HOH . C 3 HOH A 67 581 581 HOH HOH . C 3 HOH A 68 582 582 HOH HOH . C 3 HOH A 69 583 583 HOH HOH . C 3 HOH A 70 584 584 HOH HOH . C 3 HOH A 71 587 587 HOH HOH . C 3 HOH A 72 588 588 HOH HOH . C 3 HOH A 73 590 590 HOH HOH . C 3 HOH A 74 592 592 HOH HOH . C 3 HOH A 75 595 595 HOH HOH . C 3 HOH A 76 596 596 HOH HOH . C 3 HOH A 77 598 598 HOH HOH . C 3 HOH A 78 599 599 HOH HOH . C 3 HOH A 79 600 600 HOH HOH . C 3 HOH A 80 601 601 HOH HOH . C 3 HOH A 81 602 602 HOH HOH . C 3 HOH A 82 603 603 HOH HOH . C 3 HOH A 83 605 605 HOH HOH . C 3 HOH A 84 606 606 HOH HOH . C 3 HOH A 85 608 608 HOH HOH . C 3 HOH A 86 609 609 HOH HOH . C 3 HOH A 87 615 615 HOH HOH . C 3 HOH A 88 619 619 HOH HOH . C 3 HOH A 89 621 621 HOH HOH . C 3 HOH A 90 622 622 HOH HOH . C 3 HOH A 91 624 624 HOH HOH . C 3 HOH A 92 625 625 HOH HOH . C 3 HOH A 93 626 626 HOH HOH . C 3 HOH A 94 627 627 HOH HOH . C 3 HOH A 95 628 628 HOH HOH . C 3 HOH A 96 629 629 HOH HOH . C 3 HOH A 97 630 630 HOH HOH . C 3 HOH A 98 631 631 HOH HOH . C 3 HOH A 99 632 632 HOH HOH . C 3 HOH A 100 633 633 HOH HOH . C 3 HOH A 101 634 634 HOH HOH . C 3 HOH A 102 635 635 HOH HOH . C 3 HOH A 103 636 636 HOH HOH . C 3 HOH A 104 638 638 HOH HOH . C 3 HOH A 105 639 639 HOH HOH . C 3 HOH A 106 640 640 HOH HOH . C 3 HOH A 107 645 645 HOH HOH . C 3 HOH A 108 646 646 HOH HOH . C 3 HOH A 109 647 647 HOH HOH . C 3 HOH A 110 648 648 HOH HOH . C 3 HOH A 111 649 649 HOH HOH . C 3 HOH A 112 650 650 HOH HOH . C 3 HOH A 113 651 651 HOH HOH . C 3 HOH A 114 652 652 HOH HOH . C 3 HOH A 115 653 653 HOH HOH . C 3 HOH A 116 654 654 HOH HOH . C 3 HOH A 117 656 656 HOH HOH . C 3 HOH A 118 657 657 HOH HOH . C 3 HOH A 119 658 658 HOH HOH . C 3 HOH A 120 660 660 HOH HOH . C 3 HOH A 121 661 661 HOH HOH . C 3 HOH A 122 662 662 HOH HOH . C 3 HOH A 123 667 667 HOH HOH . C 3 HOH A 124 668 668 HOH HOH . C 3 HOH A 125 669 669 HOH HOH . C 3 HOH A 126 670 670 HOH HOH . C 3 HOH A 127 671 671 HOH HOH . C 3 HOH A 128 672 672 HOH HOH . C 3 HOH A 129 676 676 HOH HOH . C 3 HOH A 130 682 682 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RO6 . . . B 2 23.536 8.401 31.741 1 32.81 ? C1 RO6 450 A 1 HETATM 2 N N11 RO6 . . . B 2 23.267 9.641 32.074 1 33.25 ? N11 RO6 450 A 1 HETATM 3 C C12 RO6 . . . B 2 22.019 10.165 31.738 1 27.83 ? C12 RO6 450 A 1 HETATM 4 N N15 RO6 . . . B 2 21.798 11.524 32.167 1 27.69 ? N15 RO6 450 A 1 HETATM 5 C C16 RO6 . . . B 2 20.568 12.203 31.94 1 23.67 ? C16 RO6 450 A 1 HETATM 6 O O19 RO6 . . . B 2 20.423 13.338 32.346 1 28.06 ? O19 RO6 450 A 1 HETATM 7 N N17 RO6 . . . B 2 19.524 11.463 31.239 1 26.62 ? N17 RO6 450 A 1 HETATM 8 C C20 RO6 . . . B 2 18.22 12.047 31.005 1 28.93 ? C20 RO6 450 A 1 HETATM 9 C C21 RO6 . . . B 2 17.957 12.92 29.934 1 30.15 ? C21 RO6 450 A 1 HETATM 10 C C22 RO6 . . . B 2 16.638 13.442 29.784 1 26.12 ? C22 RO6 450 A 1 HETATM 11 C C23 RO6 . . . B 2 15.607 13.099 30.693 1 26.03 ? C23 RO6 450 A 1 HETATM 12 C C24 RO6 . . . B 2 15.863 12.225 31.771 1 34.61 ? C24 RO6 450 A 1 HETATM 13 C C25 RO6 . . . B 2 17.166 11.696 31.934 1 35.91 ? C25 RO6 450 A 1 HETATM 14 CL CL26 RO6 . . . B 2 17.482 10.611 33.275 1 43.72 ? CL26 RO6 450 A 1 HETATM 15 C C18 RO6 . . . B 2 19.706 10.063 30.752 1 27.61 ? C18 RO6 450 A 1 HETATM 16 C C14 RO6 . . . B 2 21.047 9.484 31.076 1 25.42 ? C14 RO6 450 A 1 HETATM 17 N N10 RO6 . . . B 2 22.621 7.583 31.05 1 29.31 ? N10 RO6 450 A 1 HETATM 18 C C13 RO6 . . . B 2 21.284 8.063 30.651 1 25.87 ? C13 RO6 450 A 1 HETATM 19 N N2 RO6 . . . B 2 24.752 7.796 32.042 1 35.96 ? N2 RO6 450 A 1 HETATM 20 C C3 RO6 . . . B 2 25.813 8.531 32.745 1 33.5 ? C3 RO6 450 A 1 HETATM 21 C C4 RO6 . . . B 2 26.915 8.912 31.724 1 37.29 ? C4 RO6 450 A 1 HETATM 22 C C5 RO6 . . . B 2 28.051 9.691 32.428 1 41.68 ? C5 RO6 450 A 1 HETATM 23 C C6 RO6 . . . B 2 28.646 8.869 33.6 1 35.87 ? C6 RO6 450 A 1 HETATM 24 O O9 RO6 . . . B 2 29.671 9.605 34.247 1 46.32 ? O9 RO6 450 A 1 HETATM 25 C C7 RO6 . . . B 2 27.545 8.459 34.627 1 32.29 ? C7 RO6 450 A 1 HETATM 26 C C8 RO6 . . . B 2 26.411 7.671 33.906 1 36.09 ? C8 RO6 450 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #