data_3FUD # _model_server_result.job_id g9iNR6uwAsDrzJ4pqiuH9g _model_server_result.datetime_utc '2024-11-25 14:06:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 3FUD # _exptl.entry_id 3FUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FUD _cell.length_a 77.942 _cell.length_b 87.14 _cell.length_c 99.106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc2 A OD2 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A NE2 HIS 296 A HIS 295 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 A NE2 HIS 300 A HIS 299 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 A OE1 GLU 319 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 A OD1 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 A OD2 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 B ZN ZN . A ZN 701 1_555 H O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc9 C YB YB . A YB 702 1_555 E O ACT . A ACT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 C YB YB . A YB 702 1_555 E OXT ACT . A ACT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 207 n y N1 C5 IMD sing 208 n y N1 HN1 IMD sing 209 n n C2 N3 IMD doub 210 n y C2 H2 IMD sing 211 n n N3 C4 IMD sing 212 n y N3 HN3 IMD sing 213 n n C4 C5 IMD doub 214 n y C4 H4 IMD sing 215 n n C5 H5 IMD sing 216 n n # _atom_sites.entry_id 3FUD _atom_sites.fract_transf_matrix[1][1] 0.01283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1001 ZN ZN . C 3 YB A 1 702 1002 YB YB . D 4 692 A 1 710 1 692 692 . E 5 ACT A 1 801 1003 ACT ACT . F 6 IMD A 1 802 1004 IMD IMD . G 6 IMD A 1 803 1005 IMD IMD . H 7 HOH A 1 611 1 HOH HOH . H 7 HOH A 2 612 2 HOH HOH . H 7 HOH A 3 613 3 HOH HOH . H 7 HOH A 4 614 4 HOH HOH . H 7 HOH A 5 615 5 HOH HOH . H 7 HOH A 6 616 6 HOH HOH . H 7 HOH A 7 617 7 HOH HOH . H 7 HOH A 8 618 8 HOH HOH . H 7 HOH A 9 619 9 HOH HOH . H 7 HOH A 10 620 10 HOH HOH . H 7 HOH A 11 621 11 HOH HOH . H 7 HOH A 12 622 12 HOH HOH . H 7 HOH A 13 623 13 HOH HOH . H 7 HOH A 14 624 14 HOH HOH . H 7 HOH A 15 625 15 HOH HOH . H 7 HOH A 16 626 16 HOH HOH . H 7 HOH A 17 627 17 HOH HOH . H 7 HOH A 18 628 18 HOH HOH . H 7 HOH A 19 629 19 HOH HOH . H 7 HOH A 20 630 20 HOH HOH . H 7 HOH A 21 631 21 HOH HOH . H 7 HOH A 22 632 22 HOH HOH . H 7 HOH A 23 633 23 HOH HOH . H 7 HOH A 24 634 24 HOH HOH . H 7 HOH A 25 635 25 HOH HOH . H 7 HOH A 26 636 26 HOH HOH . H 7 HOH A 27 637 27 HOH HOH . H 7 HOH A 28 638 28 HOH HOH . H 7 HOH A 29 639 29 HOH HOH . H 7 HOH A 30 640 30 HOH HOH . H 7 HOH A 31 641 31 HOH HOH . H 7 HOH A 32 642 32 HOH HOH . H 7 HOH A 33 643 33 HOH HOH . H 7 HOH A 34 644 34 HOH HOH . H 7 HOH A 35 645 35 HOH HOH . H 7 HOH A 36 646 36 HOH HOH . H 7 HOH A 37 647 37 HOH HOH . H 7 HOH A 38 648 38 HOH HOH . H 7 HOH A 39 649 39 HOH HOH . H 7 HOH A 40 650 40 HOH HOH . H 7 HOH A 41 651 41 HOH HOH . H 7 HOH A 42 652 42 HOH HOH . H 7 HOH A 43 653 43 HOH HOH . H 7 HOH A 44 654 44 HOH HOH . H 7 HOH A 45 655 45 HOH HOH . H 7 HOH A 46 656 46 HOH HOH . H 7 HOH A 47 657 47 HOH HOH . H 7 HOH A 48 658 48 HOH HOH . H 7 HOH A 49 659 49 HOH HOH . H 7 HOH A 50 660 50 HOH HOH . H 7 HOH A 51 661 51 HOH HOH . H 7 HOH A 52 662 52 HOH HOH . H 7 HOH A 53 663 53 HOH HOH . H 7 HOH A 54 664 54 HOH HOH . H 7 HOH A 55 665 55 HOH HOH . H 7 HOH A 56 666 56 HOH HOH . H 7 HOH A 57 667 57 HOH HOH . H 7 HOH A 58 668 58 HOH HOH . H 7 HOH A 59 669 59 HOH HOH . H 7 HOH A 60 670 60 HOH HOH . H 7 HOH A 61 671 61 HOH HOH . H 7 HOH A 62 672 62 HOH HOH . H 7 HOH A 63 673 63 HOH HOH . H 7 HOH A 64 674 64 HOH HOH . H 7 HOH A 65 675 65 HOH HOH . H 7 HOH A 66 676 66 HOH HOH . H 7 HOH A 67 677 67 HOH HOH . H 7 HOH A 68 678 68 HOH HOH . H 7 HOH A 69 679 69 HOH HOH . H 7 HOH A 70 680 70 HOH HOH . H 7 HOH A 71 681 71 HOH HOH . H 7 HOH A 72 682 72 HOH HOH . H 7 HOH A 73 683 73 HOH HOH . H 7 HOH A 74 684 74 HOH HOH . H 7 HOH A 75 685 75 HOH HOH . H 7 HOH A 76 686 76 HOH HOH . H 7 HOH A 77 687 77 HOH HOH . H 7 HOH A 78 688 78 HOH HOH . H 7 HOH A 79 689 79 HOH HOH . H 7 HOH A 80 690 80 HOH HOH . H 7 HOH A 81 691 81 HOH HOH . H 7 HOH A 82 692 82 HOH HOH . H 7 HOH A 83 693 83 HOH HOH . H 7 HOH A 84 694 84 HOH HOH . H 7 HOH A 85 695 85 HOH HOH . H 7 HOH A 86 696 86 HOH HOH . H 7 HOH A 87 697 87 HOH HOH . H 7 HOH A 88 698 88 HOH HOH . H 7 HOH A 89 699 89 HOH HOH . H 7 HOH A 90 700 90 HOH HOH . H 7 HOH A 91 703 91 HOH HOH . H 7 HOH A 92 704 92 HOH HOH . H 7 HOH A 93 705 93 HOH HOH . H 7 HOH A 94 706 94 HOH HOH . H 7 HOH A 95 707 95 HOH HOH . H 7 HOH A 96 708 96 HOH HOH . H 7 HOH A 97 709 97 HOH HOH . H 7 HOH A 98 711 98 HOH HOH . H 7 HOH A 99 712 99 HOH HOH . H 7 HOH A 100 713 100 HOH HOH . H 7 HOH A 101 714 101 HOH HOH . H 7 HOH A 102 715 102 HOH HOH . H 7 HOH A 103 716 103 HOH HOH . H 7 HOH A 104 717 104 HOH HOH . H 7 HOH A 105 718 105 HOH HOH . H 7 HOH A 106 719 106 HOH HOH . H 7 HOH A 107 720 107 HOH HOH . H 7 HOH A 108 721 108 HOH HOH . H 7 HOH A 109 722 109 HOH HOH . H 7 HOH A 110 723 110 HOH HOH . H 7 HOH A 111 724 111 HOH HOH . H 7 HOH A 112 725 112 HOH HOH . H 7 HOH A 113 726 113 HOH HOH . H 7 HOH A 114 727 114 HOH HOH . H 7 HOH A 115 728 115 HOH HOH . H 7 HOH A 116 729 116 HOH HOH . H 7 HOH A 117 730 117 HOH HOH . H 7 HOH A 118 731 118 HOH HOH . H 7 HOH A 119 732 119 HOH HOH . H 7 HOH A 120 733 120 HOH HOH . H 7 HOH A 121 734 121 HOH HOH . H 7 HOH A 122 735 122 HOH HOH . H 7 HOH A 123 736 123 HOH HOH . H 7 HOH A 124 737 124 HOH HOH . H 7 HOH A 125 738 125 HOH HOH . H 7 HOH A 126 739 126 HOH HOH . H 7 HOH A 127 740 127 HOH HOH . H 7 HOH A 128 741 128 HOH HOH . H 7 HOH A 129 742 129 HOH HOH . H 7 HOH A 130 743 130 HOH HOH . H 7 HOH A 131 744 131 HOH HOH . H 7 HOH A 132 745 132 HOH HOH . H 7 HOH A 133 746 133 HOH HOH . H 7 HOH A 134 747 134 HOH HOH . H 7 HOH A 135 748 135 HOH HOH . H 7 HOH A 136 749 136 HOH HOH . H 7 HOH A 137 750 137 HOH HOH . H 7 HOH A 138 751 138 HOH HOH . H 7 HOH A 139 752 139 HOH HOH . H 7 HOH A 140 753 140 HOH HOH . H 7 HOH A 141 754 141 HOH HOH . H 7 HOH A 142 755 142 HOH HOH . H 7 HOH A 143 756 143 HOH HOH . H 7 HOH A 144 757 144 HOH HOH . H 7 HOH A 145 758 145 HOH HOH . H 7 HOH A 146 759 146 HOH HOH . H 7 HOH A 147 760 147 HOH HOH . H 7 HOH A 148 761 148 HOH HOH . H 7 HOH A 149 762 149 HOH HOH . H 7 HOH A 150 763 150 HOH HOH . H 7 HOH A 151 764 151 HOH HOH . H 7 HOH A 152 765 152 HOH HOH . H 7 HOH A 153 766 153 HOH HOH . H 7 HOH A 154 767 154 HOH HOH . H 7 HOH A 155 768 155 HOH HOH . H 7 HOH A 156 769 156 HOH HOH . H 7 HOH A 157 770 157 HOH HOH . H 7 HOH A 158 771 158 HOH HOH . H 7 HOH A 159 772 159 HOH HOH . H 7 HOH A 160 773 160 HOH HOH . H 7 HOH A 161 774 161 HOH HOH . H 7 HOH A 162 775 162 HOH HOH . H 7 HOH A 163 776 163 HOH HOH . H 7 HOH A 164 777 164 HOH HOH . H 7 HOH A 165 778 165 HOH HOH . H 7 HOH A 166 779 166 HOH HOH . H 7 HOH A 167 780 167 HOH HOH . H 7 HOH A 168 781 168 HOH HOH . H 7 HOH A 169 782 169 HOH HOH . H 7 HOH A 170 783 170 HOH HOH . H 7 HOH A 171 784 171 HOH HOH . H 7 HOH A 172 785 172 HOH HOH . H 7 HOH A 173 786 173 HOH HOH . H 7 HOH A 174 787 174 HOH HOH . H 7 HOH A 175 788 175 HOH HOH . H 7 HOH A 176 789 176 HOH HOH . H 7 HOH A 177 790 177 HOH HOH . H 7 HOH A 178 791 178 HOH HOH . H 7 HOH A 179 792 179 HOH HOH . H 7 HOH A 180 793 180 HOH HOH . H 7 HOH A 181 794 181 HOH HOH . H 7 HOH A 182 795 182 HOH HOH . H 7 HOH A 183 796 183 HOH HOH . H 7 HOH A 184 797 184 HOH HOH . H 7 HOH A 185 798 185 HOH HOH . H 7 HOH A 186 799 186 HOH HOH . H 7 HOH A 187 800 187 HOH HOH . H 7 HOH A 188 804 188 HOH HOH . H 7 HOH A 189 805 189 HOH HOH . H 7 HOH A 190 806 190 HOH HOH . H 7 HOH A 191 807 191 HOH HOH . H 7 HOH A 192 808 192 HOH HOH . H 7 HOH A 193 809 193 HOH HOH . H 7 HOH A 194 810 194 HOH HOH . H 7 HOH A 195 811 195 HOH HOH . H 7 HOH A 196 812 196 HOH HOH . H 7 HOH A 197 813 197 HOH HOH . H 7 HOH A 198 814 198 HOH HOH . H 7 HOH A 199 815 199 HOH HOH . H 7 HOH A 200 816 200 HOH HOH . H 7 HOH A 201 817 201 HOH HOH . H 7 HOH A 202 818 202 HOH HOH . H 7 HOH A 203 819 203 HOH HOH . H 7 HOH A 204 820 204 HOH HOH . H 7 HOH A 205 821 205 HOH HOH . H 7 HOH A 206 822 206 HOH HOH . H 7 HOH A 207 823 207 HOH HOH . H 7 HOH A 208 824 208 HOH HOH . H 7 HOH A 209 825 209 HOH HOH . H 7 HOH A 210 826 210 HOH HOH . H 7 HOH A 211 827 211 HOH HOH . H 7 HOH A 212 828 212 HOH HOH . H 7 HOH A 213 829 213 HOH HOH . H 7 HOH A 214 830 214 HOH HOH . H 7 HOH A 215 831 215 HOH HOH . H 7 HOH A 216 832 216 HOH HOH . H 7 HOH A 217 833 217 HOH HOH . H 7 HOH A 218 834 218 HOH HOH . H 7 HOH A 219 835 219 HOH HOH . H 7 HOH A 220 836 220 HOH HOH . H 7 HOH A 221 837 221 HOH HOH . H 7 HOH A 222 838 222 HOH HOH . H 7 HOH A 223 839 223 HOH HOH . H 7 HOH A 224 840 224 HOH HOH . H 7 HOH A 225 841 225 HOH HOH . H 7 HOH A 226 842 226 HOH HOH . H 7 HOH A 227 843 227 HOH HOH . H 7 HOH A 228 844 228 HOH HOH . H 7 HOH A 229 845 229 HOH HOH . H 7 HOH A 230 846 230 HOH HOH . H 7 HOH A 231 847 231 HOH HOH . H 7 HOH A 232 848 232 HOH HOH . H 7 HOH A 233 849 233 HOH HOH . H 7 HOH A 234 850 234 HOH HOH . H 7 HOH A 235 851 235 HOH HOH . H 7 HOH A 236 852 236 HOH HOH . H 7 HOH A 237 853 237 HOH HOH . H 7 HOH A 238 854 238 HOH HOH . H 7 HOH A 239 855 239 HOH HOH . H 7 HOH A 240 856 240 HOH HOH . H 7 HOH A 241 857 241 HOH HOH . H 7 HOH A 242 858 242 HOH HOH . H 7 HOH A 243 859 243 HOH HOH . H 7 HOH A 244 860 244 HOH HOH . H 7 HOH A 245 861 245 HOH HOH . H 7 HOH A 246 862 246 HOH HOH . H 7 HOH A 247 863 247 HOH HOH . H 7 HOH A 248 864 248 HOH HOH . H 7 HOH A 249 865 249 HOH HOH . H 7 HOH A 250 866 250 HOH HOH . H 7 HOH A 251 867 251 HOH HOH . H 7 HOH A 252 868 252 HOH HOH . H 7 HOH A 253 869 253 HOH HOH . H 7 HOH A 254 870 254 HOH HOH . H 7 HOH A 255 871 255 HOH HOH . H 7 HOH A 256 872 256 HOH HOH . H 7 HOH A 257 873 257 HOH HOH . H 7 HOH A 258 874 258 HOH HOH . H 7 HOH A 259 875 259 HOH HOH . H 7 HOH A 260 876 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . G 6 -2.214 -21.051 3.299 1 25.69 ? N1 IMD 803 A 1 HETATM 2 C C2 IMD . . . G 6 -0.984 -21.106 2.709 1 27.68 ? C2 IMD 803 A 1 HETATM 3 N N3 IMD . . . G 6 -0.13 -20.252 3.346 1 27.94 ? N3 IMD 803 A 1 HETATM 4 C C4 IMD . . . G 6 -0.823 -19.654 4.351 1 25.95 ? C4 IMD 803 A 1 HETATM 5 C C5 IMD . . . G 6 -2.125 -20.157 4.307 1 26.92 ? C5 IMD 803 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #