data_3FUE # _model_server_result.job_id fJ6Jd991GgssDeMdvBgh_A _model_server_result.datetime_utc '2024-11-25 13:57:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 3FUE # _exptl.entry_id 3FUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FUE _cell.length_a 78.084 _cell.length_b 86.936 _cell.length_c 99.111 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc2 A OD2 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OD1 ASP 176 A ASP 175 1_555 E YB YB . A YB 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc4 A NE2 HIS 296 A HIS 295 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 A NE2 HIS 300 A HIS 299 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A OE1 GLU 319 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 A OE2 GLU 319 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc8 A OD2 ASP 427 A ASP 426 1_555 D YB YB . A YB 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.436 ? metalc ? metalc9 A OD1 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc10 A OD2 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc11 I O HOH . A HOH 671 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc12 B ZN ZN . A ZN 701 1_555 G O2 BES . A BES 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FUE _atom_sites.fract_transf_matrix[1][1] 0.012807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1001 ZN ZN . C 3 YB A 1 702 1002 YB YB . D 3 YB A 1 703 1 YB YB . E 3 YB A 1 704 2 YB YB . F 4 11S A 1 710 1 11S 115 . G 5 BES A 1 720 2 BES BES . H 6 IMD A 1 801 1004 IMD IMD . I 7 HOH A 1 611 1 HOH HOH . I 7 HOH A 2 612 2 HOH HOH . I 7 HOH A 3 613 3 HOH HOH . I 7 HOH A 4 614 4 HOH HOH . I 7 HOH A 5 615 5 HOH HOH . I 7 HOH A 6 616 6 HOH HOH . I 7 HOH A 7 617 7 HOH HOH . I 7 HOH A 8 618 8 HOH HOH . I 7 HOH A 9 619 9 HOH HOH . I 7 HOH A 10 620 10 HOH HOH . I 7 HOH A 11 621 11 HOH HOH . I 7 HOH A 12 622 12 HOH HOH . I 7 HOH A 13 623 13 HOH HOH . I 7 HOH A 14 624 14 HOH HOH . I 7 HOH A 15 625 15 HOH HOH . I 7 HOH A 16 626 16 HOH HOH . I 7 HOH A 17 627 17 HOH HOH . I 7 HOH A 18 628 18 HOH HOH . I 7 HOH A 19 629 19 HOH HOH . I 7 HOH A 20 630 20 HOH HOH . I 7 HOH A 21 631 21 HOH HOH . I 7 HOH A 22 632 22 HOH HOH . I 7 HOH A 23 633 23 HOH HOH . I 7 HOH A 24 634 24 HOH HOH . I 7 HOH A 25 635 25 HOH HOH . I 7 HOH A 26 636 26 HOH HOH . I 7 HOH A 27 637 27 HOH HOH . I 7 HOH A 28 638 28 HOH HOH . I 7 HOH A 29 639 29 HOH HOH . I 7 HOH A 30 640 30 HOH HOH . I 7 HOH A 31 641 31 HOH HOH . I 7 HOH A 32 642 32 HOH HOH . I 7 HOH A 33 643 33 HOH HOH . I 7 HOH A 34 644 34 HOH HOH . I 7 HOH A 35 645 36 HOH HOH . I 7 HOH A 36 646 37 HOH HOH . I 7 HOH A 37 647 38 HOH HOH . I 7 HOH A 38 648 39 HOH HOH . I 7 HOH A 39 649 40 HOH HOH . I 7 HOH A 40 650 41 HOH HOH . I 7 HOH A 41 651 42 HOH HOH . I 7 HOH A 42 652 43 HOH HOH . I 7 HOH A 43 653 44 HOH HOH . I 7 HOH A 44 654 45 HOH HOH . I 7 HOH A 45 655 46 HOH HOH . I 7 HOH A 46 656 47 HOH HOH . I 7 HOH A 47 657 48 HOH HOH . I 7 HOH A 48 658 49 HOH HOH . I 7 HOH A 49 659 50 HOH HOH . I 7 HOH A 50 660 52 HOH HOH . I 7 HOH A 51 661 53 HOH HOH . I 7 HOH A 52 662 54 HOH HOH . I 7 HOH A 53 663 55 HOH HOH . I 7 HOH A 54 664 56 HOH HOH . I 7 HOH A 55 665 57 HOH HOH . I 7 HOH A 56 666 58 HOH HOH . I 7 HOH A 57 667 59 HOH HOH . I 7 HOH A 58 668 60 HOH HOH . I 7 HOH A 59 669 61 HOH HOH . I 7 HOH A 60 670 62 HOH HOH . I 7 HOH A 61 671 63 HOH HOH . I 7 HOH A 62 672 64 HOH HOH . I 7 HOH A 63 673 65 HOH HOH . I 7 HOH A 64 674 66 HOH HOH . I 7 HOH A 65 675 67 HOH HOH . I 7 HOH A 66 676 68 HOH HOH . I 7 HOH A 67 677 69 HOH HOH . I 7 HOH A 68 678 70 HOH HOH . I 7 HOH A 69 679 71 HOH HOH . I 7 HOH A 70 680 72 HOH HOH . I 7 HOH A 71 681 73 HOH HOH . I 7 HOH A 72 682 74 HOH HOH . I 7 HOH A 73 683 75 HOH HOH . I 7 HOH A 74 684 76 HOH HOH . I 7 HOH A 75 685 77 HOH HOH . I 7 HOH A 76 686 78 HOH HOH . I 7 HOH A 77 687 79 HOH HOH . I 7 HOH A 78 688 80 HOH HOH . I 7 HOH A 79 689 81 HOH HOH . I 7 HOH A 80 690 82 HOH HOH . I 7 HOH A 81 691 83 HOH HOH . I 7 HOH A 82 692 84 HOH HOH . I 7 HOH A 83 693 85 HOH HOH . I 7 HOH A 84 694 86 HOH HOH . I 7 HOH A 85 695 87 HOH HOH . I 7 HOH A 86 696 88 HOH HOH . I 7 HOH A 87 697 89 HOH HOH . I 7 HOH A 88 698 91 HOH HOH . I 7 HOH A 89 699 92 HOH HOH . I 7 HOH A 90 700 93 HOH HOH . I 7 HOH A 91 705 94 HOH HOH . I 7 HOH A 92 706 95 HOH HOH . I 7 HOH A 93 707 96 HOH HOH . I 7 HOH A 94 708 97 HOH HOH . I 7 HOH A 95 709 98 HOH HOH . I 7 HOH A 96 711 99 HOH HOH . I 7 HOH A 97 712 100 HOH HOH . I 7 HOH A 98 713 102 HOH HOH . I 7 HOH A 99 714 103 HOH HOH . I 7 HOH A 100 715 104 HOH HOH . I 7 HOH A 101 716 106 HOH HOH . I 7 HOH A 102 717 107 HOH HOH . I 7 HOH A 103 718 108 HOH HOH . I 7 HOH A 104 719 109 HOH HOH . I 7 HOH A 105 721 110 HOH HOH . I 7 HOH A 106 722 111 HOH HOH . I 7 HOH A 107 723 112 HOH HOH . I 7 HOH A 108 724 113 HOH HOH . I 7 HOH A 109 725 114 HOH HOH . I 7 HOH A 110 726 115 HOH HOH . I 7 HOH A 111 727 116 HOH HOH . I 7 HOH A 112 728 117 HOH HOH . I 7 HOH A 113 729 118 HOH HOH . I 7 HOH A 114 730 119 HOH HOH . I 7 HOH A 115 731 120 HOH HOH . I 7 HOH A 116 732 121 HOH HOH . I 7 HOH A 117 733 122 HOH HOH . I 7 HOH A 118 734 123 HOH HOH . I 7 HOH A 119 735 124 HOH HOH . I 7 HOH A 120 736 125 HOH HOH . I 7 HOH A 121 737 126 HOH HOH . I 7 HOH A 122 738 127 HOH HOH . I 7 HOH A 123 739 128 HOH HOH . I 7 HOH A 124 740 129 HOH HOH . I 7 HOH A 125 741 130 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 56.545 _atom_site.Cartn_y 16.982 _atom_site.Cartn_z 3.274 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #