data_3FUF # _model_server_result.job_id dgNlhz9vG2SktPwT95zJ_g _model_server_result.datetime_utc '2024-11-23 00:55:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 3FUF # _exptl.entry_id 3FUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FUF _cell.length_a 78.497 _cell.length_b 87.075 _cell.length_c 99.573 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A OD2 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 A OD1 ASP 176 A ASP 175 1_555 E YB YB . A YB 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 A NE2 HIS 296 A HIS 295 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 A NE2 HIS 300 A HIS 299 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A OE1 GLU 319 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 A OD2 ASP 427 A ASP 426 1_555 D YB YB . A YB 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.402 ? metalc ? metalc8 A OD1 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 A OD2 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc10 I O HOH . A HOH 692 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc11 I O HOH . A HOH 700 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc12 B ZN ZN . A ZN 701 1_555 G O2 BES . A BES 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FUF _atom_sites.fract_transf_matrix[1][1] 0.012739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1001 ZN ZN . C 3 YB A 1 702 1002 YB YB . D 3 YB A 1 703 1 YB YB . E 3 YB A 1 704 2 YB YB . F 4 14O A 1 710 1 14O 14O . G 5 BES A 1 720 2 BES BES . H 6 IMD A 1 801 1004 IMD IMD . I 7 HOH A 1 611 1 HOH HOH . I 7 HOH A 2 612 2 HOH HOH . I 7 HOH A 3 613 3 HOH HOH . I 7 HOH A 4 614 4 HOH HOH . I 7 HOH A 5 615 5 HOH HOH . I 7 HOH A 6 616 6 HOH HOH . I 7 HOH A 7 617 7 HOH HOH . I 7 HOH A 8 618 8 HOH HOH . I 7 HOH A 9 619 9 HOH HOH . I 7 HOH A 10 620 10 HOH HOH . I 7 HOH A 11 621 11 HOH HOH . I 7 HOH A 12 622 12 HOH HOH . I 7 HOH A 13 623 13 HOH HOH . I 7 HOH A 14 624 14 HOH HOH . I 7 HOH A 15 625 15 HOH HOH . I 7 HOH A 16 626 16 HOH HOH . I 7 HOH A 17 627 17 HOH HOH . I 7 HOH A 18 628 18 HOH HOH . I 7 HOH A 19 629 19 HOH HOH . I 7 HOH A 20 630 20 HOH HOH . I 7 HOH A 21 631 21 HOH HOH . I 7 HOH A 22 632 22 HOH HOH . I 7 HOH A 23 633 23 HOH HOH . I 7 HOH A 24 634 24 HOH HOH . I 7 HOH A 25 635 25 HOH HOH . I 7 HOH A 26 636 26 HOH HOH . I 7 HOH A 27 637 27 HOH HOH . I 7 HOH A 28 638 28 HOH HOH . I 7 HOH A 29 639 29 HOH HOH . I 7 HOH A 30 640 30 HOH HOH . I 7 HOH A 31 641 31 HOH HOH . I 7 HOH A 32 642 32 HOH HOH . I 7 HOH A 33 643 33 HOH HOH . I 7 HOH A 34 644 34 HOH HOH . I 7 HOH A 35 645 35 HOH HOH . I 7 HOH A 36 646 37 HOH HOH . I 7 HOH A 37 647 38 HOH HOH . I 7 HOH A 38 648 39 HOH HOH . I 7 HOH A 39 649 40 HOH HOH . I 7 HOH A 40 650 41 HOH HOH . I 7 HOH A 41 651 42 HOH HOH . I 7 HOH A 42 652 43 HOH HOH . I 7 HOH A 43 653 44 HOH HOH . I 7 HOH A 44 654 45 HOH HOH . I 7 HOH A 45 655 46 HOH HOH . I 7 HOH A 46 656 47 HOH HOH . I 7 HOH A 47 657 48 HOH HOH . I 7 HOH A 48 658 50 HOH HOH . I 7 HOH A 49 659 51 HOH HOH . I 7 HOH A 50 660 52 HOH HOH . I 7 HOH A 51 661 53 HOH HOH . I 7 HOH A 52 662 54 HOH HOH . I 7 HOH A 53 663 56 HOH HOH . I 7 HOH A 54 664 57 HOH HOH . I 7 HOH A 55 665 58 HOH HOH . I 7 HOH A 56 666 59 HOH HOH . I 7 HOH A 57 667 60 HOH HOH . I 7 HOH A 58 668 61 HOH HOH . I 7 HOH A 59 669 62 HOH HOH . I 7 HOH A 60 670 63 HOH HOH . I 7 HOH A 61 671 64 HOH HOH . I 7 HOH A 62 672 65 HOH HOH . I 7 HOH A 63 673 66 HOH HOH . I 7 HOH A 64 674 67 HOH HOH . I 7 HOH A 65 675 68 HOH HOH . I 7 HOH A 66 676 69 HOH HOH . I 7 HOH A 67 677 70 HOH HOH . I 7 HOH A 68 678 71 HOH HOH . I 7 HOH A 69 679 72 HOH HOH . I 7 HOH A 70 680 73 HOH HOH . I 7 HOH A 71 681 74 HOH HOH . I 7 HOH A 72 682 75 HOH HOH . I 7 HOH A 73 683 76 HOH HOH . I 7 HOH A 74 684 77 HOH HOH . I 7 HOH A 75 685 78 HOH HOH . I 7 HOH A 76 686 79 HOH HOH . I 7 HOH A 77 687 80 HOH HOH . I 7 HOH A 78 688 81 HOH HOH . I 7 HOH A 79 689 82 HOH HOH . I 7 HOH A 80 690 83 HOH HOH . I 7 HOH A 81 691 84 HOH HOH . I 7 HOH A 82 692 85 HOH HOH . I 7 HOH A 83 693 86 HOH HOH . I 7 HOH A 84 694 87 HOH HOH . I 7 HOH A 85 695 88 HOH HOH . I 7 HOH A 86 696 89 HOH HOH . I 7 HOH A 87 697 90 HOH HOH . I 7 HOH A 88 698 91 HOH HOH . I 7 HOH A 89 699 92 HOH HOH . I 7 HOH A 90 700 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.992 _atom_site.Cartn_y -48.946 _atom_site.Cartn_z 6.015 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #