data_3FUM # _model_server_result.job_id AspvUuB4SEmPQBtg9Qq7uQ _model_server_result.datetime_utc '2024-11-25 11:56:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 3FUM # _exptl.entry_id 3FUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FUM _cell.length_a 78.254 _cell.length_b 87.265 _cell.length_c 99.287 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OD2 ASP 48 A ASP 47 1_555 C YB YB . A YB 702 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A NE2 HIS 296 A HIS 295 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A NE2 HIS 300 A HIS 299 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 A OE1 GLU 319 A GLU 318 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc6 A OD1 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 A OD2 ASP 482 A ASP 481 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc8 H O HOH . A HOH 628 1_555 C YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 C YB YB . A YB 702 1_555 E OXT ACT . A ACT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc10 C YB YB . A YB 702 1_555 E O ACT . A ACT 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc11 C YB YB . A YB 702 1_555 H O HOH . A HOH 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc12 C YB YB . A YB 702 1_555 H O HOH . A HOH 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FUM _atom_sites.fract_transf_matrix[1][1] 0.012779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1001 ZN ZN . C 3 YB A 1 702 1002 YB YB . D 4 80A A 1 710 1 80A 80A . E 5 ACT A 1 801 1003 ACT ACT . F 6 IMD A 1 802 1004 IMD IMD . G 6 IMD A 1 803 1005 IMD IMD . H 7 HOH A 1 611 1 HOH HOH . H 7 HOH A 2 612 612 HOH HOH . H 7 HOH A 3 613 613 HOH HOH . H 7 HOH A 4 614 614 HOH HOH . H 7 HOH A 5 615 615 HOH HOH . H 7 HOH A 6 616 2 HOH HOH . H 7 HOH A 7 617 617 HOH HOH . H 7 HOH A 8 618 618 HOH HOH . H 7 HOH A 9 619 619 HOH HOH . H 7 HOH A 10 620 620 HOH HOH . H 7 HOH A 11 621 621 HOH HOH . H 7 HOH A 12 622 622 HOH HOH . H 7 HOH A 13 623 623 HOH HOH . H 7 HOH A 14 624 3 HOH HOH . H 7 HOH A 15 625 625 HOH HOH . H 7 HOH A 16 626 626 HOH HOH . H 7 HOH A 17 627 627 HOH HOH . H 7 HOH A 18 628 628 HOH HOH . H 7 HOH A 19 629 629 HOH HOH . H 7 HOH A 20 630 630 HOH HOH . H 7 HOH A 21 631 631 HOH HOH . H 7 HOH A 22 632 632 HOH HOH . H 7 HOH A 23 633 633 HOH HOH . H 7 HOH A 24 634 634 HOH HOH . H 7 HOH A 25 635 635 HOH HOH . H 7 HOH A 26 636 636 HOH HOH . H 7 HOH A 27 637 637 HOH HOH . H 7 HOH A 28 638 638 HOH HOH . H 7 HOH A 29 639 639 HOH HOH . H 7 HOH A 30 640 640 HOH HOH . H 7 HOH A 31 641 641 HOH HOH . H 7 HOH A 32 642 642 HOH HOH . H 7 HOH A 33 643 643 HOH HOH . H 7 HOH A 34 644 644 HOH HOH . H 7 HOH A 35 645 645 HOH HOH . H 7 HOH A 36 646 646 HOH HOH . H 7 HOH A 37 647 647 HOH HOH . H 7 HOH A 38 648 648 HOH HOH . H 7 HOH A 39 649 649 HOH HOH . H 7 HOH A 40 650 650 HOH HOH . H 7 HOH A 41 651 651 HOH HOH . H 7 HOH A 42 652 652 HOH HOH . H 7 HOH A 43 653 653 HOH HOH . H 7 HOH A 44 654 654 HOH HOH . H 7 HOH A 45 655 655 HOH HOH . H 7 HOH A 46 656 656 HOH HOH . H 7 HOH A 47 657 657 HOH HOH . H 7 HOH A 48 658 658 HOH HOH . H 7 HOH A 49 659 659 HOH HOH . H 7 HOH A 50 660 660 HOH HOH . H 7 HOH A 51 661 661 HOH HOH . H 7 HOH A 52 662 662 HOH HOH . H 7 HOH A 53 663 663 HOH HOH . H 7 HOH A 54 664 664 HOH HOH . H 7 HOH A 55 665 665 HOH HOH . H 7 HOH A 56 666 666 HOH HOH . H 7 HOH A 57 667 667 HOH HOH . H 7 HOH A 58 668 668 HOH HOH . H 7 HOH A 59 669 669 HOH HOH . H 7 HOH A 60 670 670 HOH HOH . H 7 HOH A 61 671 671 HOH HOH . H 7 HOH A 62 672 672 HOH HOH . H 7 HOH A 63 673 673 HOH HOH . H 7 HOH A 64 674 674 HOH HOH . H 7 HOH A 65 675 675 HOH HOH . H 7 HOH A 66 676 676 HOH HOH . H 7 HOH A 67 677 677 HOH HOH . H 7 HOH A 68 678 678 HOH HOH . H 7 HOH A 69 679 679 HOH HOH . H 7 HOH A 70 680 680 HOH HOH . H 7 HOH A 71 681 681 HOH HOH . H 7 HOH A 72 682 682 HOH HOH . H 7 HOH A 73 683 683 HOH HOH . H 7 HOH A 74 684 684 HOH HOH . H 7 HOH A 75 685 685 HOH HOH . H 7 HOH A 76 686 686 HOH HOH . H 7 HOH A 77 687 687 HOH HOH . H 7 HOH A 78 688 688 HOH HOH . H 7 HOH A 79 689 4 HOH HOH . H 7 HOH A 80 690 690 HOH HOH . H 7 HOH A 81 691 691 HOH HOH . H 7 HOH A 82 692 692 HOH HOH . H 7 HOH A 83 693 693 HOH HOH . H 7 HOH A 84 694 694 HOH HOH . H 7 HOH A 85 695 695 HOH HOH . H 7 HOH A 86 696 696 HOH HOH . H 7 HOH A 87 697 697 HOH HOH . H 7 HOH A 88 698 698 HOH HOH . H 7 HOH A 89 699 699 HOH HOH . H 7 HOH A 90 700 700 HOH HOH . H 7 HOH A 91 703 703 HOH HOH . H 7 HOH A 92 704 704 HOH HOH . H 7 HOH A 93 705 705 HOH HOH . H 7 HOH A 94 706 706 HOH HOH . H 7 HOH A 95 707 707 HOH HOH . H 7 HOH A 96 708 708 HOH HOH . H 7 HOH A 97 709 5 HOH HOH . H 7 HOH A 98 711 711 HOH HOH . H 7 HOH A 99 712 712 HOH HOH . H 7 HOH A 100 713 7 HOH HOH . H 7 HOH A 101 714 714 HOH HOH . H 7 HOH A 102 715 8 HOH HOH . H 7 HOH A 103 716 716 HOH HOH . H 7 HOH A 104 717 717 HOH HOH . H 7 HOH A 105 718 718 HOH HOH . H 7 HOH A 106 719 9 HOH HOH . H 7 HOH A 107 720 720 HOH HOH . H 7 HOH A 108 721 721 HOH HOH . H 7 HOH A 109 722 722 HOH HOH . H 7 HOH A 110 723 11 HOH HOH . H 7 HOH A 111 724 724 HOH HOH . H 7 HOH A 112 725 725 HOH HOH . H 7 HOH A 113 726 12 HOH HOH . H 7 HOH A 114 727 727 HOH HOH . H 7 HOH A 115 728 728 HOH HOH . H 7 HOH A 116 729 729 HOH HOH . H 7 HOH A 117 730 13 HOH HOH . H 7 HOH A 118 731 14 HOH HOH . H 7 HOH A 119 732 732 HOH HOH . H 7 HOH A 120 733 733 HOH HOH . H 7 HOH A 121 734 734 HOH HOH . H 7 HOH A 122 735 15 HOH HOH . H 7 HOH A 123 736 736 HOH HOH . H 7 HOH A 124 737 737 HOH HOH . H 7 HOH A 125 738 16 HOH HOH . H 7 HOH A 126 739 17 HOH HOH . H 7 HOH A 127 740 740 HOH HOH . H 7 HOH A 128 741 741 HOH HOH . H 7 HOH A 129 742 742 HOH HOH . H 7 HOH A 130 743 18 HOH HOH . H 7 HOH A 131 744 744 HOH HOH . H 7 HOH A 132 745 745 HOH HOH . H 7 HOH A 133 746 746 HOH HOH . H 7 HOH A 134 747 747 HOH HOH . H 7 HOH A 135 748 748 HOH HOH . H 7 HOH A 136 749 749 HOH HOH . H 7 HOH A 137 750 750 HOH HOH . H 7 HOH A 138 751 751 HOH HOH . H 7 HOH A 139 752 19 HOH HOH . H 7 HOH A 140 753 701 HOH HOH . H 7 HOH A 141 754 754 HOH HOH . H 7 HOH A 142 755 755 HOH HOH . H 7 HOH A 143 756 756 HOH HOH . H 7 HOH A 144 757 757 HOH HOH . H 7 HOH A 145 758 702 HOH HOH . H 7 HOH A 146 759 759 HOH HOH . H 7 HOH A 147 760 760 HOH HOH . H 7 HOH A 148 761 803 HOH HOH . H 7 HOH A 149 763 763 HOH HOH . H 7 HOH A 150 764 764 HOH HOH . H 7 HOH A 151 766 766 HOH HOH . H 7 HOH A 152 767 767 HOH HOH . H 7 HOH A 153 768 768 HOH HOH . H 7 HOH A 154 770 770 HOH HOH . H 7 HOH A 155 771 771 HOH HOH . H 7 HOH A 156 773 773 HOH HOH . H 7 HOH A 157 774 774 HOH HOH . H 7 HOH A 158 775 775 HOH HOH . H 7 HOH A 159 778 778 HOH HOH . H 7 HOH A 160 779 779 HOH HOH . H 7 HOH A 161 780 780 HOH HOH . H 7 HOH A 162 782 782 HOH HOH . H 7 HOH A 163 783 783 HOH HOH . H 7 HOH A 164 785 785 HOH HOH . H 7 HOH A 165 786 786 HOH HOH . H 7 HOH A 166 794 794 HOH HOH . H 7 HOH A 167 795 795 HOH HOH . H 7 HOH A 168 798 798 HOH HOH . H 7 HOH A 169 800 800 HOH HOH . H 7 HOH A 170 804 804 HOH HOH . H 7 HOH A 171 806 806 HOH HOH . H 7 HOH A 172 807 807 HOH HOH . H 7 HOH A 173 808 808 HOH HOH . H 7 HOH A 174 810 810 HOH HOH . H 7 HOH A 175 811 811 HOH HOH . H 7 HOH A 176 813 813 HOH HOH . H 7 HOH A 177 814 814 HOH HOH . H 7 HOH A 178 818 818 HOH HOH . H 7 HOH A 179 821 821 HOH HOH . H 7 HOH A 180 824 824 HOH HOH . H 7 HOH A 181 825 825 HOH HOH . H 7 HOH A 182 828 828 HOH HOH . H 7 HOH A 183 830 830 HOH HOH . H 7 HOH A 184 831 831 HOH HOH . H 7 HOH A 185 832 832 HOH HOH . H 7 HOH A 186 833 833 HOH HOH . H 7 HOH A 187 841 841 HOH HOH . H 7 HOH A 188 842 842 HOH HOH . H 7 HOH A 189 843 843 HOH HOH . H 7 HOH A 190 844 844 HOH HOH . H 7 HOH A 191 845 845 HOH HOH . H 7 HOH A 192 1006 1006 HOH HOH . H 7 HOH A 193 1008 1008 HOH HOH . H 7 HOH A 194 1009 1009 HOH HOH . H 7 HOH A 195 1010 1010 HOH HOH . H 7 HOH A 196 1011 1011 HOH HOH . H 7 HOH A 197 1012 1012 HOH HOH . H 7 HOH A 198 1013 1013 HOH HOH . H 7 HOH A 199 1014 1014 HOH HOH . H 7 HOH A 200 1015 1015 HOH HOH . H 7 HOH A 201 1016 1016 HOH HOH . H 7 HOH A 202 1017 1017 HOH HOH . H 7 HOH A 203 1018 1018 HOH HOH . H 7 HOH A 204 1020 1020 HOH HOH . H 7 HOH A 205 1021 1021 HOH HOH . H 7 HOH A 206 1022 1022 HOH HOH . H 7 HOH A 207 1023 1023 HOH HOH . H 7 HOH A 208 1024 1024 HOH HOH . H 7 HOH A 209 1025 1025 HOH HOH . H 7 HOH A 210 1026 1026 HOH HOH . H 7 HOH A 211 1027 1027 HOH HOH . H 7 HOH A 212 1028 1028 HOH HOH . H 7 HOH A 213 1029 1029 HOH HOH . H 7 HOH A 214 1030 1030 HOH HOH . H 7 HOH A 215 1031 1031 HOH HOH . H 7 HOH A 216 1033 1033 HOH HOH . H 7 HOH A 217 1034 1034 HOH HOH . H 7 HOH A 218 1035 1035 HOH HOH . H 7 HOH A 219 1037 1037 HOH HOH . H 7 HOH A 220 1038 1038 HOH HOH . H 7 HOH A 221 1039 1039 HOH HOH . H 7 HOH A 222 1040 1040 HOH HOH . H 7 HOH A 223 1041 1041 HOH HOH . H 7 HOH A 224 1042 1042 HOH HOH . H 7 HOH A 225 1043 1043 HOH HOH . H 7 HOH A 226 1044 1044 HOH HOH . H 7 HOH A 227 1045 1045 HOH HOH . H 7 HOH A 228 1046 1046 HOH HOH . H 7 HOH A 229 1047 1047 HOH HOH . H 7 HOH A 230 1048 1048 HOH HOH . H 7 HOH A 231 1050 1050 HOH HOH . H 7 HOH A 232 1053 1053 HOH HOH . H 7 HOH A 233 1054 1054 HOH HOH . H 7 HOH A 234 1057 1057 HOH HOH . H 7 HOH A 235 1059 1059 HOH HOH . H 7 HOH A 236 1060 1060 HOH HOH . H 7 HOH A 237 1061 1061 HOH HOH . H 7 HOH A 238 1068 1068 HOH HOH . H 7 HOH A 239 1076 1076 HOH HOH . H 7 HOH A 240 1077 1077 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.894 _atom_site.Cartn_y 49.053 _atom_site.Cartn_z -6.057 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #