data_3FUP
#
_model_server_result.job_id            byQyQfcpA47q5_XD9e7BHQ 
_model_server_result.datetime_utc      '2024-11-24 17:52:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3FUP 
#
_exptl.entry_id    3FUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              312.37 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-{(3R,4R)-4-methyl-3-[methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}-3-oxopropanenitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FUP 
_cell.length_a            110.491 
_cell.length_b            110.491 
_cell.length_c            70.317 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 167 A GLU 1006 1_555 A N PTR 168 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C PTR 168 A PTR 1007 1_555 A N PTR 169 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C PTR 169 A PTR 1008 1_555 A N LYS 170 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C GLU 167 B GLU 1006 1_555 B N PTR 168 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 B C PTR 168 B PTR 1007 1_555 B N PTR 169 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C PTR 169 B PTR 1008 1_555 B N LYS 170 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C16 H20 N6 O' 
_chem_comp.formula_weight    312.37 
_chem_comp.id                MI1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-{(3R,4R)-4-methyl-3-[methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}-3-oxopropanenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CP-690,550 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 MI1 sing 237 n n 
C1 C6 MI1 sing 238 n n 
C1 N8 MI1 sing 239 n n 
C1 H1 MI1 sing 240 n n 
N3 C2 MI1 sing 241 n n 
C2 H2 MI1 sing 242 n n 
C2 H2A MI1 sing 243 n n 
N3 C4 MI1 sing 244 n n 
C4 C5 MI1 sing 245 n n 
C4 H4 MI1 sing 246 n n 
C4 H4A MI1 sing 247 n n 
C5 C6 MI1 sing 248 n n 
C5 H5 MI1 sing 249 n n 
C5 H5A MI1 sing 250 n n 
C7 C6 MI1 sing 251 n n 
C6 H6 MI1 sing 252 n n 
C20 N3 MI1 sing 253 n n 
O21 C20 MI1 doub 254 n n 
C22 C20 MI1 sing 255 n n 
C23 C22 MI1 sing 256 n n 
C22 H22 MI1 sing 257 n n 
C22 H22A MI1 sing 258 n n 
N24 C23 MI1 trip 259 n n 
C7 H7 MI1 sing 260 n n 
C7 H7A MI1 sing 261 n n 
C7 H7B MI1 sing 262 n n 
C9 N8 MI1 sing 263 n n 
N8 C10 MI1 sing 264 n n 
C9 H9 MI1 sing 265 n n 
C9 H9A MI1 sing 266 n n 
C9 H9B MI1 sing 267 n n 
C10 N19 MI1 doub 268 n y 
C10 C15 MI1 sing 269 n y 
C15 C16 MI1 sing 270 n y 
C15 C14 MI1 doub 271 n y 
C16 C11 MI1 doub 272 n y 
C16 H16 MI1 sing 273 n n 
C11 N12 MI1 sing 274 n y 
C11 H11 MI1 sing 275 n n 
C14 N12 MI1 sing 276 n y 
C14 N17 MI1 sing 277 n y 
C18 N17 MI1 doub 278 n y 
N19 C18 MI1 sing 279 n y 
C18 H18 MI1 sing 280 n n 
N12 HN12 MI1 sing 281 n n 
#
_atom_sites.entry_id                     3FUP 
_atom_sites.fract_transf_matrix[1][1]    0.009051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MI1 A 1 1 1 MI1 MI1 . 
D 2 MI1 B 1 1 1 MI1 MI1 . 
E 3 HOH A 1 3 3 HOH HOH . 
E 3 HOH A 2 4 4 HOH HOH . 
E 3 HOH A 3 5 5 HOH HOH . 
E 3 HOH A 4 7 7 HOH HOH . 
E 3 HOH A 5 8 8 HOH HOH . 
E 3 HOH A 6 9 9 HOH HOH . 
E 3 HOH A 7 10 10 HOH HOH . 
E 3 HOH A 8 11 11 HOH HOH . 
E 3 HOH A 9 15 15 HOH HOH . 
E 3 HOH A 10 17 17 HOH HOH . 
E 3 HOH A 11 19 19 HOH HOH . 
E 3 HOH A 12 20 20 HOH HOH . 
E 3 HOH A 13 23 23 HOH HOH . 
E 3 HOH A 14 24 24 HOH HOH . 
E 3 HOH A 15 25 25 HOH HOH . 
E 3 HOH A 16 27 27 HOH HOH . 
E 3 HOH A 17 28 28 HOH HOH . 
E 3 HOH A 18 36 36 HOH HOH . 
E 3 HOH A 19 38 38 HOH HOH . 
E 3 HOH A 20 39 39 HOH HOH . 
E 3 HOH A 21 44 44 HOH HOH . 
E 3 HOH A 22 45 45 HOH HOH . 
E 3 HOH A 23 48 48 HOH HOH . 
E 3 HOH A 24 50 50 HOH HOH . 
E 3 HOH A 25 52 52 HOH HOH . 
E 3 HOH A 26 53 53 HOH HOH . 
E 3 HOH A 27 56 56 HOH HOH . 
E 3 HOH A 28 59 59 HOH HOH . 
E 3 HOH A 29 61 61 HOH HOH . 
E 3 HOH A 30 62 62 HOH HOH . 
E 3 HOH A 31 63 63 HOH HOH . 
E 3 HOH A 32 66 66 HOH HOH . 
E 3 HOH A 33 67 67 HOH HOH . 
E 3 HOH A 34 68 68 HOH HOH . 
E 3 HOH A 35 69 69 HOH HOH . 
E 3 HOH A 36 73 73 HOH HOH . 
E 3 HOH A 37 74 74 HOH HOH . 
E 3 HOH A 38 76 76 HOH HOH . 
E 3 HOH A 39 79 79 HOH HOH . 
E 3 HOH A 40 81 81 HOH HOH . 
E 3 HOH A 41 84 84 HOH HOH . 
E 3 HOH A 42 85 85 HOH HOH . 
E 3 HOH A 43 86 86 HOH HOH . 
E 3 HOH A 44 91 91 HOH HOH . 
E 3 HOH A 45 92 92 HOH HOH . 
E 3 HOH A 46 99 99 HOH HOH . 
E 3 HOH A 47 102 102 HOH HOH . 
E 3 HOH A 48 105 105 HOH HOH . 
E 3 HOH A 49 106 106 HOH HOH . 
E 3 HOH A 50 108 108 HOH HOH . 
E 3 HOH A 51 109 109 HOH HOH . 
E 3 HOH A 52 110 110 HOH HOH . 
E 3 HOH A 53 111 111 HOH HOH . 
E 3 HOH A 54 114 114 HOH HOH . 
E 3 HOH A 55 115 115 HOH HOH . 
E 3 HOH A 56 116 116 HOH HOH . 
E 3 HOH A 57 117 117 HOH HOH . 
E 3 HOH A 58 118 118 HOH HOH . 
E 3 HOH A 59 119 119 HOH HOH . 
E 3 HOH A 60 120 120 HOH HOH . 
E 3 HOH A 61 122 122 HOH HOH . 
E 3 HOH A 62 128 128 HOH HOH . 
E 3 HOH A 63 132 132 HOH HOH . 
E 3 HOH A 64 133 133 HOH HOH . 
E 3 HOH A 65 134 134 HOH HOH . 
E 3 HOH A 66 1133 1 HOH HOH . 
F 3 HOH B 1 2 2 HOH HOH . 
F 3 HOH B 2 6 6 HOH HOH . 
F 3 HOH B 3 12 12 HOH HOH . 
F 3 HOH B 4 13 13 HOH HOH . 
F 3 HOH B 5 14 14 HOH HOH . 
F 3 HOH B 6 16 16 HOH HOH . 
F 3 HOH B 7 18 18 HOH HOH . 
F 3 HOH B 8 21 21 HOH HOH . 
F 3 HOH B 9 22 22 HOH HOH . 
F 3 HOH B 10 26 26 HOH HOH . 
F 3 HOH B 11 29 29 HOH HOH . 
F 3 HOH B 12 30 30 HOH HOH . 
F 3 HOH B 13 31 31 HOH HOH . 
F 3 HOH B 14 32 32 HOH HOH . 
F 3 HOH B 15 33 33 HOH HOH . 
F 3 HOH B 16 34 34 HOH HOH . 
F 3 HOH B 17 35 35 HOH HOH . 
F 3 HOH B 18 37 37 HOH HOH . 
F 3 HOH B 19 40 40 HOH HOH . 
F 3 HOH B 20 41 41 HOH HOH . 
F 3 HOH B 21 42 42 HOH HOH . 
F 3 HOH B 22 43 43 HOH HOH . 
F 3 HOH B 23 46 46 HOH HOH . 
F 3 HOH B 24 47 47 HOH HOH . 
F 3 HOH B 25 49 49 HOH HOH . 
F 3 HOH B 26 51 51 HOH HOH . 
F 3 HOH B 27 54 54 HOH HOH . 
F 3 HOH B 28 55 55 HOH HOH . 
F 3 HOH B 29 57 57 HOH HOH . 
F 3 HOH B 30 58 58 HOH HOH . 
F 3 HOH B 31 60 60 HOH HOH . 
F 3 HOH B 32 64 64 HOH HOH . 
F 3 HOH B 33 65 65 HOH HOH . 
F 3 HOH B 34 70 70 HOH HOH . 
F 3 HOH B 35 71 71 HOH HOH . 
F 3 HOH B 36 72 72 HOH HOH . 
F 3 HOH B 37 75 75 HOH HOH . 
F 3 HOH B 38 77 77 HOH HOH . 
F 3 HOH B 39 78 78 HOH HOH . 
F 3 HOH B 40 80 80 HOH HOH . 
F 3 HOH B 41 82 82 HOH HOH . 
F 3 HOH B 42 83 83 HOH HOH . 
F 3 HOH B 43 87 87 HOH HOH . 
F 3 HOH B 44 88 88 HOH HOH . 
F 3 HOH B 45 89 89 HOH HOH . 
F 3 HOH B 46 93 93 HOH HOH . 
F 3 HOH B 47 94 94 HOH HOH . 
F 3 HOH B 48 95 95 HOH HOH . 
F 3 HOH B 49 96 96 HOH HOH . 
F 3 HOH B 50 97 97 HOH HOH . 
F 3 HOH B 51 98 98 HOH HOH . 
F 3 HOH B 52 100 100 HOH HOH . 
F 3 HOH B 53 101 101 HOH HOH . 
F 3 HOH B 54 104 104 HOH HOH . 
F 3 HOH B 55 107 107 HOH HOH . 
F 3 HOH B 56 112 112 HOH HOH . 
F 3 HOH B 57 113 113 HOH HOH . 
F 3 HOH B 58 121 121 HOH HOH . 
F 3 HOH B 59 123 123 HOH HOH . 
F 3 HOH B 60 124 124 HOH HOH . 
F 3 HOH B 61 126 126 HOH HOH . 
F 3 HOH B 62 127 127 HOH HOH . 
F 3 HOH B 63 129 129 HOH HOH . 
F 3 HOH B 64 130 130 HOH HOH . 
F 3 HOH B 65 131 131 HOH HOH . 
F 3 HOH B 66 135 135 HOH HOH . 
F 3 HOH B 67 136 136 HOH HOH . 
F 3 HOH B 68 137 137 HOH HOH . 
F 3 HOH B 69 138 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MI1 . . . C 2 -57.434 9.478 0.531 1 40.58 ? C1 MI1 1 A 1 
HETATM 2 C C2 MI1 . . . C 2 -56.322 8.432 0.438 1 30.89 ? C2 MI1 1 A 1 
HETATM 3 C C4 MI1 . . . C 2 -55.84 8.795 2.918 1 45.9 ? C4 MI1 1 A 1 
HETATM 4 C C5 MI1 . . . C 2 -56.856 9.957 3.018 1 38.49 ? C5 MI1 1 A 1 
HETATM 5 C C6 MI1 . . . C 2 -57.175 10.568 1.634 1 50.81 ? C6 MI1 1 A 1 
HETATM 6 N N3 MI1 . . . C 2 -56.152 7.9 1.788 1 37.29 ? N3 MI1 1 A 1 
HETATM 7 O O21 MI1 . . . C 2 -56.506 5.899 0.978 1 40.01 ? O21 MI1 1 A 1 
HETATM 8 C C20 MI1 . . . C 2 -56.265 6.617 1.94 1 34.89 ? C20 MI1 1 A 1 
HETATM 9 C C22 MI1 . . . C 2 -56.083 6.111 3.3 1 35.32 ? C22 MI1 1 A 1 
HETATM 10 C C23 MI1 . . . C 2 -56.517 4.959 3.598 1 40.95 ? C23 MI1 1 A 1 
HETATM 11 N N24 MI1 . . . C 2 -56.677 3.826 3.813 1 26.02 ? N24 MI1 1 A 1 
HETATM 12 C C7 MI1 . . . C 2 -56.149 11.645 1.284 1 44.22 ? C7 MI1 1 A 1 
HETATM 13 N N8 MI1 . . . C 2 -57.57 10.159 -0.764 1 43.54 ? N8 MI1 1 A 1 
HETATM 14 C C9 MI1 . . . C 2 -56.441 10.259 -1.727 1 40.15 ? C9 MI1 1 A 1 
HETATM 15 C C10 MI1 . . . C 2 -58.802 10.687 -1.09 1 42.4 ? C10 MI1 1 A 1 
HETATM 16 C C15 MI1 . . . C 2 -59.892 10.61 -0.215 1 44.15 ? C15 MI1 1 A 1 
HETATM 17 C C16 MI1 . . . C 2 -60.111 10.04 1.099 1 41.09 ? C16 MI1 1 A 1 
HETATM 18 C C11 MI1 . . . C 2 -61.456 10.35 1.332 1 41.46 ? C11 MI1 1 A 1 
HETATM 19 N N12 MI1 . . . C 2 -62.025 11.051 0.299 1 40.24 ? N12 MI1 1 A 1 
HETATM 20 C C14 MI1 . . . C 2 -61.123 11.265 -0.671 1 35.36 ? C14 MI1 1 A 1 
HETATM 21 N N17 MI1 . . . C 2 -61.161 11.862 -1.874 1 36.03 ? N17 MI1 1 A 1 
HETATM 22 C C18 MI1 . . . C 2 -60.095 11.903 -2.654 1 34.21 ? C18 MI1 1 A 1 
HETATM 23 N N19 MI1 . . . C 2 -58.96 11.343 -2.277 1 36.14 ? N19 MI1 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#