data_3FV8
#
_model_server_result.job_id            smd5IdGn-5rSE7YOgav09Q 
_model_server_result.datetime_utc      '2025-08-31 10:55:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    3FV8 
#
_exptl.entry_id    3FV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FV8 
_cell.length_a            81.565 
_cell.length_b            125.315 
_cell.length_c            69.253 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 78 A LYS 116 1_555 A N OCY 79 A OCY 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C OCY 79 A OCY 117 1_555 A N VAL 80 A VAL 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C LEU 115 A LEU 153 1_555 A N OCY 116 A OCY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C OCY 116 A OCY 154 1_555 A N GLN 117 A GLN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 A C ASP 162 A ASP 200 1_555 A N OCY 163 A OCY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale6 A C OCY 163 A OCY 201 1_555 A N THR 164 A THR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3FV8 
_atom_sites.fract_transf_matrix[1][1]    0.01226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JK3 A 1 500 500 JK3 JK3 . 
C 3 EDO A 1 501 501 EDO EDO . 
D 3 EDO A 1 502 502 EDO EDO . 
E 3 EDO A 1 503 503 EDO EDO . 
F 3 EDO A 1 504 504 EDO EDO . 
G 3 EDO A 1 505 505 EDO EDO . 
H 4 HOH A 1 705 1 HOH HOH . 
H 4 HOH A 2 706 2 HOH HOH . 
H 4 HOH A 3 707 3 HOH HOH . 
H 4 HOH A 4 708 4 HOH HOH . 
H 4 HOH A 5 709 5 HOH HOH . 
H 4 HOH A 6 710 6 HOH HOH . 
H 4 HOH A 7 711 7 HOH HOH . 
H 4 HOH A 8 712 8 HOH HOH . 
H 4 HOH A 9 713 9 HOH HOH . 
H 4 HOH A 10 714 10 HOH HOH . 
H 4 HOH A 11 715 11 HOH HOH . 
H 4 HOH A 12 716 12 HOH HOH . 
H 4 HOH A 13 717 13 HOH HOH . 
H 4 HOH A 14 718 14 HOH HOH . 
H 4 HOH A 15 719 15 HOH HOH . 
H 4 HOH A 16 720 16 HOH HOH . 
H 4 HOH A 17 721 17 HOH HOH . 
H 4 HOH A 18 722 18 HOH HOH . 
H 4 HOH A 19 723 19 HOH HOH . 
H 4 HOH A 20 724 20 HOH HOH . 
H 4 HOH A 21 725 21 HOH HOH . 
H 4 HOH A 22 726 22 HOH HOH . 
H 4 HOH A 23 727 23 HOH HOH . 
H 4 HOH A 24 728 24 HOH HOH . 
H 4 HOH A 25 729 25 HOH HOH . 
H 4 HOH A 26 730 26 HOH HOH . 
H 4 HOH A 27 731 27 HOH HOH . 
H 4 HOH A 28 732 28 HOH HOH . 
H 4 HOH A 29 733 29 HOH HOH . 
H 4 HOH A 30 734 30 HOH HOH . 
H 4 HOH A 31 735 31 HOH HOH . 
H 4 HOH A 32 736 32 HOH HOH . 
H 4 HOH A 33 737 33 HOH HOH . 
H 4 HOH A 34 738 34 HOH HOH . 
H 4 HOH A 35 739 35 HOH HOH . 
H 4 HOH A 36 740 36 HOH HOH . 
H 4 HOH A 37 741 37 HOH HOH . 
H 4 HOH A 38 742 38 HOH HOH . 
H 4 HOH A 39 743 39 HOH HOH . 
H 4 HOH A 40 744 40 HOH HOH . 
H 4 HOH A 41 745 41 HOH HOH . 
H 4 HOH A 42 746 42 HOH HOH . 
H 4 HOH A 43 747 43 HOH HOH . 
H 4 HOH A 44 748 44 HOH HOH . 
H 4 HOH A 45 749 45 HOH HOH . 
H 4 HOH A 46 750 46 HOH HOH . 
H 4 HOH A 47 751 47 HOH HOH . 
H 4 HOH A 48 752 48 HOH HOH . 
H 4 HOH A 49 753 49 HOH HOH . 
H 4 HOH A 50 754 50 HOH HOH . 
H 4 HOH A 51 755 51 HOH HOH . 
H 4 HOH A 52 756 52 HOH HOH . 
H 4 HOH A 53 757 53 HOH HOH . 
H 4 HOH A 54 758 54 HOH HOH . 
H 4 HOH A 55 759 55 HOH HOH . 
H 4 HOH A 56 760 56 HOH HOH . 
H 4 HOH A 57 761 57 HOH HOH . 
H 4 HOH A 58 762 58 HOH HOH . 
H 4 HOH A 59 763 59 HOH HOH . 
H 4 HOH A 60 764 60 HOH HOH . 
H 4 HOH A 61 765 61 HOH HOH . 
H 4 HOH A 62 766 62 HOH HOH . 
H 4 HOH A 63 767 63 HOH HOH . 
H 4 HOH A 64 768 64 HOH HOH . 
H 4 HOH A 65 769 65 HOH HOH . 
H 4 HOH A 66 770 66 HOH HOH . 
H 4 HOH A 67 771 67 HOH HOH . 
H 4 HOH A 68 772 68 HOH HOH . 
H 4 HOH A 69 773 69 HOH HOH . 
H 4 HOH A 70 774 70 HOH HOH . 
H 4 HOH A 71 775 71 HOH HOH . 
H 4 HOH A 72 776 72 HOH HOH . 
H 4 HOH A 73 777 73 HOH HOH . 
H 4 HOH A 74 778 74 HOH HOH . 
H 4 HOH A 75 779 75 HOH HOH . 
H 4 HOH A 76 780 76 HOH HOH . 
H 4 HOH A 77 781 77 HOH HOH . 
H 4 HOH A 78 782 78 HOH HOH . 
H 4 HOH A 79 783 79 HOH HOH . 
H 4 HOH A 80 784 80 HOH HOH . 
H 4 HOH A 81 785 81 HOH HOH . 
H 4 HOH A 82 786 82 HOH HOH . 
H 4 HOH A 83 787 83 HOH HOH . 
H 4 HOH A 84 788 84 HOH HOH . 
H 4 HOH A 85 789 85 HOH HOH . 
H 4 HOH A 86 790 86 HOH HOH . 
H 4 HOH A 87 791 87 HOH HOH . 
H 4 HOH A 88 792 88 HOH HOH . 
H 4 HOH A 89 793 89 HOH HOH . 
H 4 HOH A 90 794 90 HOH HOH . 
H 4 HOH A 91 795 91 HOH HOH . 
H 4 HOH A 92 796 92 HOH HOH . 
H 4 HOH A 93 797 93 HOH HOH . 
H 4 HOH A 94 798 94 HOH HOH . 
H 4 HOH A 95 799 95 HOH HOH . 
H 4 HOH A 96 800 96 HOH HOH . 
H 4 HOH A 97 801 97 HOH HOH . 
H 4 HOH A 98 802 98 HOH HOH . 
H 4 HOH A 99 803 99 HOH HOH . 
H 4 HOH A 100 804 100 HOH HOH . 
H 4 HOH A 101 805 101 HOH HOH . 
H 4 HOH A 102 806 102 HOH HOH . 
H 4 HOH A 103 807 103 HOH HOH . 
H 4 HOH A 104 808 104 HOH HOH . 
H 4 HOH A 105 809 105 HOH HOH . 
H 4 HOH A 106 810 106 HOH HOH . 
H 4 HOH A 107 811 107 HOH HOH . 
H 4 HOH A 108 812 108 HOH HOH . 
H 4 HOH A 109 813 109 HOH HOH . 
H 4 HOH A 110 814 110 HOH HOH . 
H 4 HOH A 111 815 111 HOH HOH . 
H 4 HOH A 112 816 112 HOH HOH . 
H 4 HOH A 113 817 113 HOH HOH . 
H 4 HOH A 114 818 114 HOH HOH . 
H 4 HOH A 115 819 115 HOH HOH . 
H 4 HOH A 116 820 116 HOH HOH . 
H 4 HOH A 117 821 117 HOH HOH . 
H 4 HOH A 118 822 118 HOH HOH . 
H 4 HOH A 119 823 119 HOH HOH . 
H 4 HOH A 120 824 120 HOH HOH . 
H 4 HOH A 121 825 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 -15.434 -7.438 -5.781 1 56.92 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . F 3 -14.988 -8.529 -6.605 1 55.1 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . F 3 -14.735 -6.137 -6.181 1 60.57 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . F 3 -15.08 -5.088 -5.267 1 64.54 ? O2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           426 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#