data_3FVF # _model_server_result.job_id nl8sAF-d8e8Z0EUI-6ZBoQ _model_server_result.datetime_utc '2024-11-13 07:01:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3FVF # _exptl.entry_id 3FVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.192 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(hydroxymethyl)phenyl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FVF _cell.length_a 53.296 _cell.length_b 53.752 _cell.length_c 82.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 B CYS 42 1_555 A SG CYS 42 B CYS 58 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 26 B CYS 42 1_555 A SG CYS 42 B CYS 58 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 124 B CYS 136 1_555 A SG CYS 200 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 157 B CYS 168 1_555 A SG CYS 179 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 190 B CYS 191 1_555 A SG CYS 218 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C8 H11 N3 O' _chem_comp.formula_weight 165.192 _chem_comp.id 1JZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(hydroxymethyl)phenyl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C10 1JZ doub 1 n n N4 C10 1JZ sing 2 n n C10 N3 1JZ sing 3 n n C11 C12 1JZ doub 4 n y C6 C12 1JZ sing 5 n y C12 H12 1JZ sing 6 n n C8 C9 1JZ doub 7 n y C8 C7 1JZ sing 8 n y C8 H8 1JZ sing 9 n n C7 C6 1JZ doub 10 n y C7 H7 1JZ sing 11 n n C6 C5 1JZ sing 12 n n C5 O2 1JZ sing 13 n n C5 H5 1JZ sing 14 n n C5 H5A 1JZ sing 15 n n O2 HO2 1JZ sing 16 n n N3 C9 1JZ sing 17 n n C9 C11 1JZ sing 18 n y C11 H11 1JZ sing 19 n n N3 HN3 1JZ sing 20 n n N4 HN4 1JZ sing 21 n n N4 HN4A 1JZ sing 22 n n N5 HN5 1JZ sing 23 n n # _atom_sites.entry_id 3FVF _atom_sites.fract_transf_matrix[1][1] 0.018763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL B 1 2 2 GOL GOL . C 3 1JZ B 1 1 1 1JZ 1JZ . D 4 DMS B 1 273 1 DMS DMS . E 4 DMS B 1 274 2 DMS DMS . F 5 HOH B 1 3 3 HOH HOH . F 5 HOH B 2 4 4 HOH HOH . F 5 HOH B 3 5 5 HOH HOH . F 5 HOH B 4 6 6 HOH HOH . F 5 HOH B 5 7 7 HOH HOH . F 5 HOH B 6 8 8 HOH HOH . F 5 HOH B 7 9 9 HOH HOH . F 5 HOH B 8 10 10 HOH HOH . F 5 HOH B 9 11 11 HOH HOH . F 5 HOH B 10 12 12 HOH HOH . F 5 HOH B 11 13 13 HOH HOH . F 5 HOH B 12 14 14 HOH HOH . F 5 HOH B 13 15 15 HOH HOH . F 5 HOH B 14 37 37 HOH HOH . F 5 HOH B 15 59 59 HOH HOH . F 5 HOH B 16 60 60 HOH HOH . F 5 HOH B 17 61 61 HOH HOH . F 5 HOH B 18 62 62 HOH HOH . F 5 HOH B 19 145 145 HOH HOH . F 5 HOH B 20 146 146 HOH HOH . F 5 HOH B 21 147 147 HOH HOH . F 5 HOH B 22 148 148 HOH HOH . F 5 HOH B 23 149 149 HOH HOH . F 5 HOH B 24 150 150 HOH HOH . F 5 HOH B 25 151 151 HOH HOH . F 5 HOH B 26 152 152 HOH HOH . F 5 HOH B 27 173 173 HOH HOH . F 5 HOH B 28 174 174 HOH HOH . F 5 HOH B 29 175 175 HOH HOH . F 5 HOH B 30 176 176 HOH HOH . F 5 HOH B 31 177 177 HOH HOH . F 5 HOH B 32 187 187 HOH HOH . F 5 HOH B 33 275 1 HOH HOH . F 5 HOH B 34 276 16 HOH HOH . F 5 HOH B 35 277 17 HOH HOH . F 5 HOH B 36 278 18 HOH HOH . F 5 HOH B 37 279 279 HOH HOH . F 5 HOH B 38 280 19 HOH HOH . F 5 HOH B 39 281 281 HOH HOH . F 5 HOH B 40 282 20 HOH HOH . F 5 HOH B 41 283 283 HOH HOH . F 5 HOH B 42 284 21 HOH HOH . F 5 HOH B 43 285 22 HOH HOH . F 5 HOH B 44 286 23 HOH HOH . F 5 HOH B 45 287 24 HOH HOH . F 5 HOH B 46 288 288 HOH HOH . F 5 HOH B 47 289 25 HOH HOH . F 5 HOH B 48 290 26 HOH HOH . F 5 HOH B 49 291 27 HOH HOH . F 5 HOH B 50 292 292 HOH HOH . F 5 HOH B 51 293 28 HOH HOH . F 5 HOH B 52 294 29 HOH HOH . F 5 HOH B 53 295 30 HOH HOH . F 5 HOH B 54 296 31 HOH HOH . F 5 HOH B 55 297 32 HOH HOH . F 5 HOH B 56 298 33 HOH HOH . F 5 HOH B 57 299 299 HOH HOH . F 5 HOH B 58 300 300 HOH HOH . F 5 HOH B 59 301 34 HOH HOH . F 5 HOH B 60 302 35 HOH HOH . F 5 HOH B 61 303 36 HOH HOH . F 5 HOH B 62 304 38 HOH HOH . F 5 HOH B 63 305 39 HOH HOH . F 5 HOH B 64 306 306 HOH HOH . F 5 HOH B 65 307 40 HOH HOH . F 5 HOH B 66 308 308 HOH HOH . F 5 HOH B 67 309 41 HOH HOH . F 5 HOH B 68 310 310 HOH HOH . F 5 HOH B 69 311 311 HOH HOH . F 5 HOH B 70 312 312 HOH HOH . F 5 HOH B 71 313 42 HOH HOH . F 5 HOH B 72 314 44 HOH HOH . F 5 HOH B 73 315 45 HOH HOH . F 5 HOH B 74 316 316 HOH HOH . F 5 HOH B 75 317 46 HOH HOH . F 5 HOH B 76 318 318 HOH HOH . F 5 HOH B 77 319 319 HOH HOH . F 5 HOH B 78 320 320 HOH HOH . F 5 HOH B 79 321 47 HOH HOH . F 5 HOH B 80 322 48 HOH HOH . F 5 HOH B 81 323 49 HOH HOH . F 5 HOH B 82 324 50 HOH HOH . F 5 HOH B 83 325 51 HOH HOH . F 5 HOH B 84 326 52 HOH HOH . F 5 HOH B 85 327 53 HOH HOH . F 5 HOH B 86 328 54 HOH HOH . F 5 HOH B 87 329 55 HOH HOH . F 5 HOH B 88 330 56 HOH HOH . F 5 HOH B 89 331 57 HOH HOH . F 5 HOH B 90 332 58 HOH HOH . F 5 HOH B 91 333 63 HOH HOH . F 5 HOH B 92 334 334 HOH HOH . F 5 HOH B 93 335 335 HOH HOH . F 5 HOH B 94 336 64 HOH HOH . F 5 HOH B 95 337 65 HOH HOH . F 5 HOH B 96 338 338 HOH HOH . F 5 HOH B 97 339 66 HOH HOH . F 5 HOH B 98 340 67 HOH HOH . F 5 HOH B 99 341 68 HOH HOH . F 5 HOH B 100 342 69 HOH HOH . F 5 HOH B 101 343 70 HOH HOH . F 5 HOH B 102 344 71 HOH HOH . F 5 HOH B 103 345 72 HOH HOH . F 5 HOH B 104 346 73 HOH HOH . F 5 HOH B 105 347 74 HOH HOH . F 5 HOH B 106 348 75 HOH HOH . F 5 HOH B 107 349 76 HOH HOH . F 5 HOH B 108 350 77 HOH HOH . F 5 HOH B 109 351 78 HOH HOH . F 5 HOH B 110 352 79 HOH HOH . F 5 HOH B 111 353 80 HOH HOH . F 5 HOH B 112 354 81 HOH HOH . F 5 HOH B 113 355 82 HOH HOH . F 5 HOH B 114 356 83 HOH HOH . F 5 HOH B 115 357 84 HOH HOH . F 5 HOH B 116 358 85 HOH HOH . F 5 HOH B 117 359 86 HOH HOH . F 5 HOH B 118 360 87 HOH HOH . F 5 HOH B 119 361 88 HOH HOH . F 5 HOH B 120 362 89 HOH HOH . F 5 HOH B 121 363 90 HOH HOH . F 5 HOH B 122 364 91 HOH HOH . F 5 HOH B 123 365 92 HOH HOH . F 5 HOH B 124 366 93 HOH HOH . F 5 HOH B 125 367 94 HOH HOH . F 5 HOH B 126 368 95 HOH HOH . F 5 HOH B 127 369 96 HOH HOH . F 5 HOH B 128 370 97 HOH HOH . F 5 HOH B 129 371 98 HOH HOH . F 5 HOH B 130 372 99 HOH HOH . F 5 HOH B 131 373 100 HOH HOH . F 5 HOH B 132 374 101 HOH HOH . F 5 HOH B 133 375 102 HOH HOH . F 5 HOH B 134 376 103 HOH HOH . F 5 HOH B 135 377 104 HOH HOH . F 5 HOH B 136 378 105 HOH HOH . F 5 HOH B 137 379 106 HOH HOH . F 5 HOH B 138 380 107 HOH HOH . F 5 HOH B 139 381 108 HOH HOH . F 5 HOH B 140 382 109 HOH HOH . F 5 HOH B 141 383 110 HOH HOH . F 5 HOH B 142 384 112 HOH HOH . F 5 HOH B 143 385 113 HOH HOH . F 5 HOH B 144 386 114 HOH HOH . F 5 HOH B 145 387 115 HOH HOH . F 5 HOH B 146 388 116 HOH HOH . F 5 HOH B 147 389 117 HOH HOH . F 5 HOH B 148 390 118 HOH HOH . F 5 HOH B 149 391 119 HOH HOH . F 5 HOH B 150 392 120 HOH HOH . F 5 HOH B 151 393 121 HOH HOH . F 5 HOH B 152 394 122 HOH HOH . F 5 HOH B 153 395 123 HOH HOH . F 5 HOH B 154 396 124 HOH HOH . F 5 HOH B 155 397 125 HOH HOH . F 5 HOH B 156 398 126 HOH HOH . F 5 HOH B 157 399 127 HOH HOH . F 5 HOH B 158 400 128 HOH HOH . F 5 HOH B 159 401 129 HOH HOH . F 5 HOH B 160 402 130 HOH HOH . F 5 HOH B 161 403 131 HOH HOH . F 5 HOH B 162 404 132 HOH HOH . F 5 HOH B 163 405 133 HOH HOH . F 5 HOH B 164 406 134 HOH HOH . F 5 HOH B 165 407 137 HOH HOH . F 5 HOH B 166 408 138 HOH HOH . F 5 HOH B 167 409 139 HOH HOH . F 5 HOH B 168 410 140 HOH HOH . F 5 HOH B 169 411 141 HOH HOH . F 5 HOH B 170 412 143 HOH HOH . F 5 HOH B 171 413 144 HOH HOH . F 5 HOH B 172 414 153 HOH HOH . F 5 HOH B 173 415 154 HOH HOH . F 5 HOH B 174 416 155 HOH HOH . F 5 HOH B 175 417 156 HOH HOH . F 5 HOH B 176 418 157 HOH HOH . F 5 HOH B 177 419 158 HOH HOH . F 5 HOH B 178 420 159 HOH HOH . F 5 HOH B 179 421 160 HOH HOH . F 5 HOH B 180 422 162 HOH HOH . F 5 HOH B 181 423 163 HOH HOH . F 5 HOH B 182 424 164 HOH HOH . F 5 HOH B 183 425 165 HOH HOH . F 5 HOH B 184 426 166 HOH HOH . F 5 HOH B 185 427 167 HOH HOH . F 5 HOH B 186 428 168 HOH HOH . F 5 HOH B 187 429 169 HOH HOH . F 5 HOH B 188 430 170 HOH HOH . F 5 HOH B 189 431 171 HOH HOH . F 5 HOH B 190 432 172 HOH HOH . F 5 HOH B 191 433 178 HOH HOH . F 5 HOH B 192 434 179 HOH HOH . F 5 HOH B 193 435 180 HOH HOH . F 5 HOH B 194 436 181 HOH HOH . F 5 HOH B 195 437 182 HOH HOH . F 5 HOH B 196 438 183 HOH HOH . F 5 HOH B 197 439 188 HOH HOH . F 5 HOH B 198 440 189 HOH HOH . F 5 HOH B 199 441 190 HOH HOH . F 5 HOH B 200 442 191 HOH HOH . F 5 HOH B 201 443 193 HOH HOH . F 5 HOH B 202 444 194 HOH HOH . F 5 HOH B 203 445 196 HOH HOH . F 5 HOH B 204 446 197 HOH HOH . F 5 HOH B 205 447 199 HOH HOH . F 5 HOH B 206 448 201 HOH HOH . F 5 HOH B 207 449 202 HOH HOH . F 5 HOH B 208 450 203 HOH HOH . F 5 HOH B 209 451 204 HOH HOH . F 5 HOH B 210 452 205 HOH HOH . F 5 HOH B 211 453 206 HOH HOH . F 5 HOH B 212 454 207 HOH HOH . F 5 HOH B 213 455 209 HOH HOH . F 5 HOH B 214 456 210 HOH HOH . F 5 HOH B 215 457 213 HOH HOH . F 5 HOH B 216 458 214 HOH HOH . F 5 HOH B 217 459 215 HOH HOH . F 5 HOH B 218 460 216 HOH HOH . F 5 HOH B 219 461 217 HOH HOH . F 5 HOH B 220 462 218 HOH HOH . F 5 HOH B 221 463 220 HOH HOH . F 5 HOH B 222 464 221 HOH HOH . F 5 HOH B 223 465 223 HOH HOH . F 5 HOH B 224 466 224 HOH HOH . F 5 HOH B 225 467 226 HOH HOH . F 5 HOH B 226 468 227 HOH HOH . F 5 HOH B 227 469 230 HOH HOH . F 5 HOH B 228 470 231 HOH HOH . F 5 HOH B 229 471 232 HOH HOH . F 5 HOH B 230 472 234 HOH HOH . F 5 HOH B 231 473 236 HOH HOH . F 5 HOH B 232 474 237 HOH HOH . F 5 HOH B 233 475 239 HOH HOH . F 5 HOH B 234 476 240 HOH HOH . F 5 HOH B 235 477 242 HOH HOH . F 5 HOH B 236 478 245 HOH HOH . F 5 HOH B 237 479 248 HOH HOH . F 5 HOH B 238 480 249 HOH HOH . F 5 HOH B 239 481 256 HOH HOH . F 5 HOH B 240 482 258 HOH HOH . F 5 HOH B 241 483 262 HOH HOH . F 5 HOH B 242 484 265 HOH HOH . F 5 HOH B 243 485 268 HOH HOH . F 5 HOH B 244 486 272 HOH HOH . F 5 HOH B 245 901 901 HOH HOH . F 5 HOH B 246 902 902 HOH HOH . F 5 HOH B 247 903 903 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1JZ . . . C 3 10.268 35.992 -0.871 1 18.84 ? C10 1JZ 1 B 1 HETATM 2 C C12 1JZ . . . C 3 11.783 35.947 3.672 1 21.94 ? C12 1JZ 1 B 1 HETATM 3 C C8 1JZ . . . C 3 11.648 34.565 1.288 1 24.02 ? C8 1JZ 1 B 1 HETATM 4 C C7 1JZ . . . C 3 12.212 33.973 2.404 1 23.95 ? C7 1JZ 1 B 1 HETATM 5 C C5 1JZ . . . C 3 12.877 34.081 4.814 1 21.34 ? C5 1JZ 1 B 1 HETATM 6 O O2 1JZ . . . C 3 12.11 34.185 5.823 1 21.13 ? O2 1JZ 1 B 1 HETATM 7 C C6 1JZ . . . C 3 12.292 34.666 3.595 1 20.02 ? C6 1JZ 1 B 1 HETATM 8 C C9 1JZ . . . C 3 11.121 35.853 1.356 1 18.3 ? C9 1JZ 1 B 1 HETATM 9 C C11 1JZ . . . C 3 11.184 36.519 2.552 1 20.12 ? C11 1JZ 1 B 1 HETATM 10 N N3 1JZ . . . C 3 10.611 36.509 0.294 1 16.46 ? N3 1JZ 1 B 1 HETATM 11 N N4 1JZ . . . C 3 10.006 34.669 -0.872 1 20.2 ? N4 1JZ 1 B 1 HETATM 12 N N5 1JZ . . . C 3 10.023 36.721 -1.958 1 19.68 ? N5 1JZ 1 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #