data_3FVJ
#
_model_server_result.job_id            0EC4LmWIyfYCyjkKONflTw 
_model_server_result.datetime_utc      '2024-11-28 01:11:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":125}' 
#
_entry.id    3FVJ 
#
_exptl.entry_id    3FVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FVJ 
_cell.length_a            69.064 
_cell.length_b            69.064 
_cell.length_c            68.84 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 45.893333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A O TYR 28 A TYR 28 1_555 B CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc2 A O GLY 30 A GLY 30 1_555 B CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc3 A O GLY 32 A GLY 32 1_555 B CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 B CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 B CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc6 A OE2 GLU 71 A GLU 71 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 A O SER 72 A SER 72 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc8 A OE1 GLU 92 A GLU 92 1_555 C CA CA . A CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3FVJ 
_atom_sites.fract_transf_matrix[1][1]    0.014479 
_atom_sites.fract_transf_matrix[1][2]    0.00836 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 125 77 CA CA . 
C 2 CA A 1 126 78 CA CA . 
D 3 CL A 1 127 79 CL CL . 
E 4 HOH A 1 128 1 HOH HOH . 
E 4 HOH A 2 129 2 HOH HOH . 
E 4 HOH A 3 130 3 HOH HOH . 
E 4 HOH A 4 131 4 HOH HOH . 
E 4 HOH A 5 132 5 HOH HOH . 
E 4 HOH A 6 133 6 HOH HOH . 
E 4 HOH A 7 134 7 HOH HOH . 
E 4 HOH A 8 135 8 HOH HOH . 
E 4 HOH A 9 136 9 HOH HOH . 
E 4 HOH A 10 137 10 HOH HOH . 
E 4 HOH A 11 138 11 HOH HOH . 
E 4 HOH A 12 139 12 HOH HOH . 
E 4 HOH A 13 140 13 HOH HOH . 
E 4 HOH A 14 141 14 HOH HOH . 
E 4 HOH A 15 142 15 HOH HOH . 
E 4 HOH A 16 143 16 HOH HOH . 
E 4 HOH A 17 144 17 HOH HOH . 
E 4 HOH A 18 145 18 HOH HOH . 
E 4 HOH A 19 146 19 HOH HOH . 
E 4 HOH A 20 147 20 HOH HOH . 
E 4 HOH A 21 148 21 HOH HOH . 
E 4 HOH A 22 149 22 HOH HOH . 
E 4 HOH A 23 150 23 HOH HOH . 
E 4 HOH A 24 151 24 HOH HOH . 
E 4 HOH A 25 152 25 HOH HOH . 
E 4 HOH A 26 153 26 HOH HOH . 
E 4 HOH A 27 154 27 HOH HOH . 
E 4 HOH A 28 155 28 HOH HOH . 
E 4 HOH A 29 156 29 HOH HOH . 
E 4 HOH A 30 157 30 HOH HOH . 
E 4 HOH A 31 158 31 HOH HOH . 
E 4 HOH A 32 159 32 HOH HOH . 
E 4 HOH A 33 160 33 HOH HOH . 
E 4 HOH A 34 161 34 HOH HOH . 
E 4 HOH A 35 162 35 HOH HOH . 
E 4 HOH A 36 163 36 HOH HOH . 
E 4 HOH A 37 164 37 HOH HOH . 
E 4 HOH A 38 165 38 HOH HOH . 
E 4 HOH A 39 166 39 HOH HOH . 
E 4 HOH A 40 167 40 HOH HOH . 
E 4 HOH A 41 168 41 HOH HOH . 
E 4 HOH A 42 169 42 HOH HOH . 
E 4 HOH A 43 170 43 HOH HOH . 
E 4 HOH A 44 171 44 HOH HOH . 
E 4 HOH A 45 172 46 HOH HOH . 
E 4 HOH A 46 173 47 HOH HOH . 
E 4 HOH A 47 174 48 HOH HOH . 
E 4 HOH A 48 175 49 HOH HOH . 
E 4 HOH A 49 176 50 HOH HOH . 
E 4 HOH A 50 177 51 HOH HOH . 
E 4 HOH A 51 178 52 HOH HOH . 
E 4 HOH A 52 179 53 HOH HOH . 
E 4 HOH A 53 180 54 HOH HOH . 
E 4 HOH A 54 181 55 HOH HOH . 
E 4 HOH A 55 182 56 HOH HOH . 
E 4 HOH A 56 183 57 HOH HOH . 
E 4 HOH A 57 184 58 HOH HOH . 
E 4 HOH A 58 185 59 HOH HOH . 
E 4 HOH A 59 186 60 HOH HOH . 
E 4 HOH A 60 187 61 HOH HOH . 
E 4 HOH A 61 188 62 HOH HOH . 
E 4 HOH A 62 189 63 HOH HOH . 
E 4 HOH A 63 190 64 HOH HOH . 
E 4 HOH A 64 191 65 HOH HOH . 
E 4 HOH A 65 192 66 HOH HOH . 
E 4 HOH A 66 194 68 HOH HOH . 
E 4 HOH A 67 195 69 HOH HOH . 
E 4 HOH A 68 196 70 HOH HOH . 
E 4 HOH A 69 197 71 HOH HOH . 
E 4 HOH A 70 198 72 HOH HOH . 
E 4 HOH A 71 199 73 HOH HOH . 
E 4 HOH A 72 200 74 HOH HOH . 
E 4 HOH A 73 201 75 HOH HOH . 
E 4 HOH A 74 202 76 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.15 
_atom_site.Cartn_y               20.018 
_atom_site.Cartn_z               14.812 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        69.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           125 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#