data_3FW1 # _model_server_result.job_id txPr2kUNRDTUr_SsxLTy3A _model_server_result.datetime_utc '2024-11-29 06:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":235}' # _entry.id 3FW1 # _exptl.entry_id 3FW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FW1 _cell.length_a 100.337 _cell.length_b 100.337 _cell.length_c 104.858 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 50.1685 50.1685 52.429 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 176 A HIS 173 1_555 B ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A ND1 HIS 180 A HIS 177 1_555 B ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc3 A O CYS 225 A CYS 222 1_555 B ZN ZN . A ZN 231 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 A SG CYS 225 A CYS 222 1_555 B ZN ZN . A ZN 231 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 328 n n C1 H1C1 MRD sing 329 n n C1 H1C2 MRD sing 330 n n C1 H1C3 MRD sing 331 n n C2 O2 MRD sing 332 n n C2 CM MRD sing 333 n n C2 C3 MRD sing 334 n n O2 H2 MRD sing 335 n n CM HMC1 MRD sing 336 n n CM HMC2 MRD sing 337 n n CM HMC3 MRD sing 338 n n C3 C4 MRD sing 339 n n C3 H3C1 MRD sing 340 n n C3 H3C2 MRD sing 341 n n C4 O4 MRD sing 342 n n C4 C5 MRD sing 343 n n C4 H4 MRD sing 344 n n O4 HA MRD sing 345 n n C5 H5C1 MRD sing 346 n n C5 H5C2 MRD sing 347 n n C5 H5C3 MRD sing 348 n n # _atom_sites.entry_id 3FW1 _atom_sites.fract_transf_matrix[1][1] 0.009966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 231 231 ZN ZN2 . C 3 FAD A 1 232 232 FAD FAD . D 4 STI A 1 233 233 STI STI . E 5 MRD A 1 234 1 MRD MRD . F 5 MRD A 1 235 2 MRD MRD . G 6 HOH A 1 236 1 HOH HOH . G 6 HOH A 2 237 2 HOH HOH . G 6 HOH A 3 238 3 HOH HOH . G 6 HOH A 4 239 4 HOH HOH . G 6 HOH A 5 240 5 HOH HOH . G 6 HOH A 6 241 6 HOH HOH . G 6 HOH A 7 242 7 HOH HOH . G 6 HOH A 8 243 8 HOH HOH . G 6 HOH A 9 244 9 HOH HOH . G 6 HOH A 10 245 10 HOH HOH . G 6 HOH A 11 246 11 HOH HOH . G 6 HOH A 12 247 12 HOH HOH . G 6 HOH A 13 248 13 HOH HOH . G 6 HOH A 14 249 14 HOH HOH . G 6 HOH A 15 250 15 HOH HOH . G 6 HOH A 16 251 16 HOH HOH . G 6 HOH A 17 252 17 HOH HOH . G 6 HOH A 18 253 18 HOH HOH . G 6 HOH A 19 254 19 HOH HOH . G 6 HOH A 20 255 20 HOH HOH . G 6 HOH A 21 256 21 HOH HOH . G 6 HOH A 22 257 22 HOH HOH . G 6 HOH A 23 258 23 HOH HOH . G 6 HOH A 24 259 24 HOH HOH . G 6 HOH A 25 260 25 HOH HOH . G 6 HOH A 26 261 26 HOH HOH . G 6 HOH A 27 262 27 HOH HOH . G 6 HOH A 28 263 28 HOH HOH . G 6 HOH A 29 264 29 HOH HOH . G 6 HOH A 30 265 30 HOH HOH . G 6 HOH A 31 266 31 HOH HOH . G 6 HOH A 32 267 32 HOH HOH . G 6 HOH A 33 268 33 HOH HOH . G 6 HOH A 34 269 34 HOH HOH . G 6 HOH A 35 270 35 HOH HOH . G 6 HOH A 36 271 36 HOH HOH . G 6 HOH A 37 272 37 HOH HOH . G 6 HOH A 38 273 38 HOH HOH . G 6 HOH A 39 274 39 HOH HOH . G 6 HOH A 40 275 40 HOH HOH . G 6 HOH A 41 276 41 HOH HOH . G 6 HOH A 42 277 42 HOH HOH . G 6 HOH A 43 278 43 HOH HOH . G 6 HOH A 44 279 44 HOH HOH . G 6 HOH A 45 280 45 HOH HOH . G 6 HOH A 46 281 47 HOH HOH . G 6 HOH A 47 282 48 HOH HOH . G 6 HOH A 48 283 49 HOH HOH . G 6 HOH A 49 284 50 HOH HOH . G 6 HOH A 50 285 51 HOH HOH . G 6 HOH A 51 286 52 HOH HOH . G 6 HOH A 52 287 53 HOH HOH . G 6 HOH A 53 288 54 HOH HOH . G 6 HOH A 54 289 55 HOH HOH . G 6 HOH A 55 290 56 HOH HOH . G 6 HOH A 56 291 57 HOH HOH . G 6 HOH A 57 292 58 HOH HOH . G 6 HOH A 58 293 59 HOH HOH . G 6 HOH A 59 294 60 HOH HOH . G 6 HOH A 60 295 61 HOH HOH . G 6 HOH A 61 296 62 HOH HOH . G 6 HOH A 62 297 63 HOH HOH . G 6 HOH A 63 298 64 HOH HOH . G 6 HOH A 64 299 65 HOH HOH . G 6 HOH A 65 300 66 HOH HOH . G 6 HOH A 66 301 67 HOH HOH . G 6 HOH A 67 302 68 HOH HOH . G 6 HOH A 68 303 69 HOH HOH . G 6 HOH A 69 304 70 HOH HOH . G 6 HOH A 70 305 71 HOH HOH . G 6 HOH A 71 306 72 HOH HOH . G 6 HOH A 72 307 73 HOH HOH . G 6 HOH A 73 308 74 HOH HOH . G 6 HOH A 74 309 75 HOH HOH . G 6 HOH A 75 310 76 HOH HOH . G 6 HOH A 76 311 77 HOH HOH . G 6 HOH A 77 312 78 HOH HOH . G 6 HOH A 78 313 79 HOH HOH . G 6 HOH A 79 314 80 HOH HOH . G 6 HOH A 80 315 81 HOH HOH . G 6 HOH A 81 316 82 HOH HOH . G 6 HOH A 82 317 84 HOH HOH . G 6 HOH A 83 318 85 HOH HOH . G 6 HOH A 84 319 86 HOH HOH . G 6 HOH A 85 320 87 HOH HOH . G 6 HOH A 86 321 88 HOH HOH . G 6 HOH A 87 322 89 HOH HOH . G 6 HOH A 88 323 90 HOH HOH . G 6 HOH A 89 324 91 HOH HOH . G 6 HOH A 90 325 92 HOH HOH . G 6 HOH A 91 326 93 HOH HOH . G 6 HOH A 92 327 94 HOH HOH . G 6 HOH A 93 328 95 HOH HOH . G 6 HOH A 94 329 96 HOH HOH . G 6 HOH A 95 330 97 HOH HOH . G 6 HOH A 96 331 98 HOH HOH . G 6 HOH A 97 332 99 HOH HOH . G 6 HOH A 98 333 100 HOH HOH . G 6 HOH A 99 334 101 HOH HOH . G 6 HOH A 100 335 102 HOH HOH . G 6 HOH A 101 336 103 HOH HOH . G 6 HOH A 102 337 105 HOH HOH . G 6 HOH A 103 338 106 HOH HOH . G 6 HOH A 104 339 107 HOH HOH . G 6 HOH A 105 340 108 HOH HOH . G 6 HOH A 106 341 109 HOH HOH . G 6 HOH A 107 342 110 HOH HOH . G 6 HOH A 108 343 111 HOH HOH . G 6 HOH A 109 344 112 HOH HOH . G 6 HOH A 110 345 113 HOH HOH . G 6 HOH A 111 346 114 HOH HOH . G 6 HOH A 112 347 115 HOH HOH . G 6 HOH A 113 348 116 HOH HOH . G 6 HOH A 114 349 117 HOH HOH . G 6 HOH A 115 350 119 HOH HOH . G 6 HOH A 116 351 120 HOH HOH . G 6 HOH A 117 352 121 HOH HOH . G 6 HOH A 118 353 122 HOH HOH . G 6 HOH A 119 354 123 HOH HOH . G 6 HOH A 120 355 124 HOH HOH . G 6 HOH A 121 356 125 HOH HOH . G 6 HOH A 122 357 126 HOH HOH . G 6 HOH A 123 358 127 HOH HOH . G 6 HOH A 124 359 128 HOH HOH . G 6 HOH A 125 360 129 HOH HOH . G 6 HOH A 126 361 130 HOH HOH . G 6 HOH A 127 362 131 HOH HOH . G 6 HOH A 128 363 132 HOH HOH . G 6 HOH A 129 364 133 HOH HOH . G 6 HOH A 130 365 134 HOH HOH . G 6 HOH A 131 366 135 HOH HOH . G 6 HOH A 132 367 136 HOH HOH . G 6 HOH A 133 368 137 HOH HOH . G 6 HOH A 134 369 138 HOH HOH . G 6 HOH A 135 370 139 HOH HOH . G 6 HOH A 136 371 140 HOH HOH . G 6 HOH A 137 372 141 HOH HOH . G 6 HOH A 138 373 142 HOH HOH . G 6 HOH A 139 374 143 HOH HOH . G 6 HOH A 140 375 144 HOH HOH . G 6 HOH A 141 376 145 HOH HOH . G 6 HOH A 142 377 146 HOH HOH . G 6 HOH A 143 378 147 HOH HOH . G 6 HOH A 144 379 148 HOH HOH . G 6 HOH A 145 380 149 HOH HOH . G 6 HOH A 146 381 150 HOH HOH . G 6 HOH A 147 382 151 HOH HOH . G 6 HOH A 148 383 152 HOH HOH . G 6 HOH A 149 384 153 HOH HOH . G 6 HOH A 150 385 154 HOH HOH . G 6 HOH A 151 386 155 HOH HOH . G 6 HOH A 152 387 156 HOH HOH . G 6 HOH A 153 388 157 HOH HOH . G 6 HOH A 154 389 158 HOH HOH . G 6 HOH A 155 390 159 HOH HOH . G 6 HOH A 156 391 160 HOH HOH . G 6 HOH A 157 392 161 HOH HOH . G 6 HOH A 158 393 162 HOH HOH . G 6 HOH A 159 394 163 HOH HOH . G 6 HOH A 160 395 164 HOH HOH . G 6 HOH A 161 396 165 HOH HOH . G 6 HOH A 162 397 166 HOH HOH . G 6 HOH A 163 398 167 HOH HOH . G 6 HOH A 164 399 168 HOH HOH . G 6 HOH A 165 400 169 HOH HOH . G 6 HOH A 166 401 170 HOH HOH . G 6 HOH A 167 402 171 HOH HOH . G 6 HOH A 168 403 172 HOH HOH . G 6 HOH A 169 404 173 HOH HOH . G 6 HOH A 170 405 174 HOH HOH . G 6 HOH A 171 406 175 HOH HOH . G 6 HOH A 172 407 176 HOH HOH . G 6 HOH A 173 408 177 HOH HOH . G 6 HOH A 174 409 178 HOH HOH . G 6 HOH A 175 410 180 HOH HOH . G 6 HOH A 176 411 181 HOH HOH . G 6 HOH A 177 412 182 HOH HOH . G 6 HOH A 178 413 183 HOH HOH . G 6 HOH A 179 414 186 HOH HOH . G 6 HOH A 180 415 187 HOH HOH . G 6 HOH A 181 416 188 HOH HOH . G 6 HOH A 182 417 189 HOH HOH . G 6 HOH A 183 418 190 HOH HOH . G 6 HOH A 184 419 193 HOH HOH . G 6 HOH A 185 420 194 HOH HOH . G 6 HOH A 186 421 195 HOH HOH . G 6 HOH A 187 422 196 HOH HOH . G 6 HOH A 188 423 197 HOH HOH . G 6 HOH A 189 424 198 HOH HOH . G 6 HOH A 190 425 199 HOH HOH . G 6 HOH A 191 426 200 HOH HOH . G 6 HOH A 192 427 201 HOH HOH . G 6 HOH A 193 428 206 HOH HOH . G 6 HOH A 194 429 207 HOH HOH . G 6 HOH A 195 430 208 HOH HOH . G 6 HOH A 196 431 209 HOH HOH . G 6 HOH A 197 432 210 HOH HOH . G 6 HOH A 198 433 211 HOH HOH . G 6 HOH A 199 434 212 HOH HOH . G 6 HOH A 200 435 215 HOH HOH . G 6 HOH A 201 436 218 HOH HOH . G 6 HOH A 202 437 219 HOH HOH . G 6 HOH A 203 438 220 HOH HOH . G 6 HOH A 204 439 222 HOH HOH . G 6 HOH A 205 440 223 HOH HOH . G 6 HOH A 206 441 226 HOH HOH . G 6 HOH A 207 442 228 HOH HOH . G 6 HOH A 208 443 229 HOH HOH . G 6 HOH A 209 444 230 HOH HOH . G 6 HOH A 210 445 231 HOH HOH . G 6 HOH A 211 446 232 HOH HOH . G 6 HOH A 212 447 233 HOH HOH . G 6 HOH A 213 448 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . F 5 14.229 -0.771 14.863 1 75.86 ? C1 MRD 235 A 1 HETATM 2 C C2 MRD . . . F 5 15.261 -1.304 15.837 1 73.07 ? C2 MRD 235 A 1 HETATM 3 O O2 MRD . . . F 5 15.169 -2.722 15.95 1 76.22 ? O2 MRD 235 A 1 HETATM 4 C CM MRD . . . F 5 16.706 -1.019 15.489 1 71.4 ? CM MRD 235 A 1 HETATM 5 C C3 MRD . . . F 5 15.001 -0.592 17.114 1 66.35 ? C3 MRD 235 A 1 HETATM 6 C C4 MRD . . . F 5 13.869 -1.22 17.858 1 74.99 ? C4 MRD 235 A 1 HETATM 7 O O4 MRD . . . F 5 12.851 -0.283 17.997 1 78.16 ? O4 MRD 235 A 1 HETATM 8 C C5 MRD . . . F 5 14.406 -1.753 19.183 1 72.01 ? C5 MRD 235 A 1 HETATM 9 H H1C1 MRD . . . F 5 14.25 -1.352 13.943 1 90.73 ? H1C1 MRD 235 A 1 HETATM 10 H H1C2 MRD . . . F 5 14.438 0.272 14.633 1 90.73 ? H1C2 MRD 235 A 1 HETATM 11 H H1C3 MRD . . . F 5 13.243 -0.842 15.318 1 90.73 ? H1C3 MRD 235 A 1 HETATM 12 H H2 MRD . . . F 5 15.62 -3.143 15.189 1 91.16 ? H2 MRD 235 A 1 HETATM 13 H HMC1 MRD . . . F 5 16.932 0.013 15.743 1 85.38 ? HMC1 MRD 235 A 1 HETATM 14 H HMC2 MRD . . . F 5 16.884 -1.184 14.428 1 85.38 ? HMC2 MRD 235 A 1 HETATM 15 H HMC3 MRD . . . F 5 17.343 -1.684 16.065 1 85.38 ? HMC3 MRD 235 A 1 HETATM 16 H H3C1 MRD . . . F 5 15.905 -0.589 17.712 1 79.32 ? H3C1 MRD 235 A 1 HETATM 17 H H3C2 MRD . . . F 5 14.751 0.44 16.904 1 79.32 ? H3C2 MRD 235 A 1 HETATM 18 H H4 MRD . . . F 5 13.444 -2.049 17.3 1 89.69 ? H4 MRD 235 A 1 HETATM 19 H HA MRD . . . F 5 12.151 -0.638 18.576 1 93.49 ? HA MRD 235 A 1 HETATM 20 H H5C1 MRD . . . F 5 15.282 -2.371 19.02 1 86.11 ? H5C1 MRD 235 A 1 HETATM 21 H H5C2 MRD . . . F 5 14.658 -0.92 19.831 1 86.11 ? H5C2 MRD 235 A 1 HETATM 22 H H5C3 MRD . . . F 5 13.645 -2.363 19.664 1 86.11 ? H5C3 MRD 235 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #