data_3FWR # _model_server_result.job_id o8fbzuynkT8qKHRhDZHjlA _model_server_result.datetime_utc '2024-10-18 19:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":221}' # _entry.id 3FWR # _exptl.entry_id 3FWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FWR _cell.length_a 54.273 _cell.length_b 103.047 _cell.length_c 98.342 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3FWR _atom_sites.fract_transf_matrix[1][1] 0.018425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 221 213 ADP ADP . D 2 ADP B 1 221 210 ADP ADP . E 3 HOH A 1 222 222 HOH HOH . E 3 HOH A 2 223 223 HOH HOH . E 3 HOH A 3 224 224 HOH HOH . E 3 HOH A 4 225 225 HOH HOH . E 3 HOH A 5 226 226 HOH HOH . E 3 HOH A 6 227 227 HOH HOH . E 3 HOH A 7 228 228 HOH HOH . E 3 HOH A 8 229 229 HOH HOH . E 3 HOH A 9 230 230 HOH HOH . E 3 HOH A 10 231 231 HOH HOH . E 3 HOH A 11 232 232 HOH HOH . E 3 HOH A 12 233 233 HOH HOH . E 3 HOH A 13 234 234 HOH HOH . E 3 HOH A 14 235 214 HOH HOH . E 3 HOH A 15 236 215 HOH HOH . E 3 HOH A 16 237 216 HOH HOH . E 3 HOH A 17 238 217 HOH HOH . E 3 HOH A 18 239 218 HOH HOH . E 3 HOH A 19 240 219 HOH HOH . E 3 HOH A 20 241 220 HOH HOH . E 3 HOH A 21 242 221 HOH HOH . F 3 HOH B 1 222 222 HOH HOH . F 3 HOH B 2 223 223 HOH HOH . F 3 HOH B 3 224 224 HOH HOH . F 3 HOH B 4 225 225 HOH HOH . F 3 HOH B 5 226 226 HOH HOH . F 3 HOH B 6 227 227 HOH HOH . F 3 HOH B 7 228 228 HOH HOH . F 3 HOH B 8 229 229 HOH HOH . F 3 HOH B 9 230 230 HOH HOH . F 3 HOH B 10 231 231 HOH HOH . F 3 HOH B 11 232 232 HOH HOH . F 3 HOH B 12 233 233 HOH HOH . F 3 HOH B 13 234 234 HOH HOH . F 3 HOH B 14 235 235 HOH HOH . F 3 HOH B 15 236 236 HOH HOH . F 3 HOH B 16 237 211 HOH HOH . F 3 HOH B 17 238 212 HOH HOH . F 3 HOH B 18 239 213 HOH HOH . F 3 HOH B 19 240 214 HOH HOH . F 3 HOH B 20 241 215 HOH HOH . F 3 HOH B 21 242 216 HOH HOH . F 3 HOH B 22 243 217 HOH HOH . F 3 HOH B 23 244 218 HOH HOH . F 3 HOH B 24 245 219 HOH HOH . F 3 HOH B 25 246 220 HOH HOH . F 3 HOH B 26 247 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 2 5.899 48.4 40.971 1 28.29 ? PB ADP 221 B 1 HETATM 2 O O1B ADP . . . D 2 5.724 49.626 41.778 1 27.39 ? O1B ADP 221 B 1 HETATM 3 O O2B ADP . . . D 2 5.656 47.094 41.929 1 29.88 ? O2B ADP 221 B 1 HETATM 4 O O3B ADP . . . D 2 4.818 48.245 39.746 1 28.95 ? O3B ADP 221 B 1 HETATM 5 P PA ADP . . . D 2 8.751 47.839 40.812 1 21.32 ? PA ADP 221 B 1 HETATM 6 O O1A ADP . . . D 2 9.78 47.836 39.734 1 22.81 ? O1A ADP 221 B 1 HETATM 7 O O2A ADP . . . D 2 8.585 46.603 41.605 1 24.97 ? O2A ADP 221 B 1 HETATM 8 O O3A ADP . . . D 2 7.34 48.236 40.18 1 23.4 ? O3A ADP 221 B 1 HETATM 9 O O5' ADP . . . D 2 9.106 49.132 41.729 1 19.21 ? O5' ADP 221 B 1 HETATM 10 C C5' ADP . . . D 2 8.778 49.286 43.114 1 19.71 ? C5' ADP 221 B 1 HETATM 11 C C4' ADP . . . D 2 9.158 50.681 43.592 1 19.14 ? C4' ADP 221 B 1 HETATM 12 O O4' ADP . . . D 2 10.609 50.709 43.592 1 21.96 ? O4' ADP 221 B 1 HETATM 13 C C3' ADP . . . D 2 8.712 51.747 42.596 1 19.52 ? C3' ADP 221 B 1 HETATM 14 O O3' ADP . . . D 2 8.392 52.885 43.351 1 19.32 ? O3' ADP 221 B 1 HETATM 15 C C2' ADP . . . D 2 9.921 52.087 41.737 1 20.26 ? C2' ADP 221 B 1 HETATM 16 O O2' ADP . . . D 2 10.008 53.506 41.504 1 18.57 ? O2' ADP 221 B 1 HETATM 17 C C1' ADP . . . D 2 11.102 51.676 42.608 1 21.25 ? C1' ADP 221 B 1 HETATM 18 N N9 ADP . . . D 2 12.134 51.053 41.726 1 24.42 ? N9 ADP 221 B 1 HETATM 19 C C8 ADP . . . D 2 11.936 50.31 40.613 1 25.66 ? C8 ADP 221 B 1 HETATM 20 N N7 ADP . . . D 2 13.115 49.922 40.096 1 23.63 ? N7 ADP 221 B 1 HETATM 21 C C5 ADP . . . D 2 14.049 50.456 40.872 1 23.97 ? C5 ADP 221 B 1 HETATM 22 C C6 ADP . . . D 2 15.42 50.433 40.852 1 25.1 ? C6 ADP 221 B 1 HETATM 23 N N6 ADP . . . D 2 16.074 49.775 39.89 1 24.69 ? N6 ADP 221 B 1 HETATM 24 N N1 ADP . . . D 2 16.092 51.096 41.807 1 25.89 ? N1 ADP 221 B 1 HETATM 25 C C2 ADP . . . D 2 15.49 51.771 42.771 1 24.76 ? C2 ADP 221 B 1 HETATM 26 N N3 ADP . . . D 2 14.184 51.803 42.819 1 26.41 ? N3 ADP 221 B 1 HETATM 27 C C4 ADP . . . D 2 13.445 51.168 41.891 1 24.54 ? C4 ADP 221 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #