data_3FWV # _model_server_result.job_id F_36DvlErkcuSKEihGo8ew _model_server_result.datetime_utc '2024-12-12 20:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":4}' # _entry.id 3FWV # _exptl.entry_id 3FWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.21 _cell.angle_gamma 90 _cell.entry_id 3FWV _cell.length_a 37.604 _cell.length_b 66.599 _cell.length_c 48.622 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ACE 1 C ACE 0 1_555 C N MET 2 C MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 D C ACE 1 D ACE 0 1_555 D N MET 2 D MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 F NI NI . A NI 5 1_555 I O HOH . A HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 F NI NI . A NI 5 1_555 I O HOH . A HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 F NI NI . A NI 5 1_555 A NE2 HIS 100 A HIS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 F NI NI . A NI 5 1_555 A NZ LYS 104 A LYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 G NI NI . B NI 2 1_555 B NH2 ARG 76 B ARG 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 G NI NI . B NI 2 1_555 B NE2 HIS 109 B HIS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 H NI NI . B NI 4 1_555 J O HOH . B HOH 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 H NI NI . B NI 4 1_555 B NE2 HIS 26 B HIS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FWV _atom_sites.fract_transf_matrix[1][1] 0.026593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008234 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NI A 1 3 3 NI NI . F 3 NI A 1 5 5 NI NI . G 3 NI B 1 2 2 NI NI . H 3 NI B 1 4 4 NI NI . I 4 HOH A 1 6 6 HOH HOH . I 4 HOH A 2 7 7 HOH HOH . I 4 HOH A 3 8 8 HOH HOH . I 4 HOH A 4 10 10 HOH HOH . I 4 HOH A 5 11 11 HOH HOH . I 4 HOH A 6 12 12 HOH HOH . I 4 HOH A 7 14 14 HOH HOH . I 4 HOH A 8 15 15 HOH HOH . I 4 HOH A 9 18 18 HOH HOH . I 4 HOH A 10 19 19 HOH HOH . I 4 HOH A 11 22 22 HOH HOH . I 4 HOH A 12 28 28 HOH HOH . I 4 HOH A 13 30 30 HOH HOH . I 4 HOH A 14 31 31 HOH HOH . I 4 HOH A 15 34 34 HOH HOH . I 4 HOH A 16 35 35 HOH HOH . I 4 HOH A 17 36 36 HOH HOH . I 4 HOH A 18 37 37 HOH HOH . I 4 HOH A 19 38 38 HOH HOH . I 4 HOH A 20 40 40 HOH HOH . I 4 HOH A 21 42 42 HOH HOH . I 4 HOH A 22 44 44 HOH HOH . I 4 HOH A 23 45 45 HOH HOH . I 4 HOH A 24 46 46 HOH HOH . I 4 HOH A 25 47 47 HOH HOH . I 4 HOH A 26 48 48 HOH HOH . I 4 HOH A 27 51 51 HOH HOH . I 4 HOH A 28 62 62 HOH HOH . I 4 HOH A 29 63 63 HOH HOH . I 4 HOH A 30 65 65 HOH HOH . I 4 HOH A 31 69 69 HOH HOH . I 4 HOH A 32 71 71 HOH HOH . I 4 HOH A 33 72 72 HOH HOH . I 4 HOH A 34 93 93 HOH HOH . I 4 HOH A 35 94 94 HOH HOH . I 4 HOH A 36 96 96 HOH HOH . I 4 HOH A 37 97 97 HOH HOH . I 4 HOH A 38 99 99 HOH HOH . I 4 HOH A 39 110 110 HOH HOH . I 4 HOH A 40 124 124 HOH HOH . I 4 HOH A 41 141 141 HOH HOH . I 4 HOH A 42 160 160 HOH HOH . I 4 HOH A 43 166 166 HOH HOH . I 4 HOH A 44 188 188 HOH HOH . I 4 HOH A 45 351 5 HOH HOH . J 4 HOH B 1 13 13 HOH HOH . J 4 HOH B 2 16 16 HOH HOH . J 4 HOH B 3 20 20 HOH HOH . J 4 HOH B 4 21 21 HOH HOH . J 4 HOH B 5 23 23 HOH HOH . J 4 HOH B 6 24 24 HOH HOH . J 4 HOH B 7 25 25 HOH HOH . J 4 HOH B 8 26 26 HOH HOH . J 4 HOH B 9 27 27 HOH HOH . J 4 HOH B 10 32 32 HOH HOH . J 4 HOH B 11 39 39 HOH HOH . J 4 HOH B 12 43 43 HOH HOH . J 4 HOH B 13 49 49 HOH HOH . J 4 HOH B 14 50 50 HOH HOH . J 4 HOH B 15 53 53 HOH HOH . J 4 HOH B 16 54 54 HOH HOH . J 4 HOH B 17 55 55 HOH HOH . J 4 HOH B 18 60 60 HOH HOH . J 4 HOH B 19 61 61 HOH HOH . J 4 HOH B 20 64 64 HOH HOH . J 4 HOH B 21 82 82 HOH HOH . J 4 HOH B 22 83 83 HOH HOH . J 4 HOH B 23 85 85 HOH HOH . J 4 HOH B 24 86 86 HOH HOH . J 4 HOH B 25 90 90 HOH HOH . J 4 HOH B 26 98 98 HOH HOH . J 4 HOH B 27 100 100 HOH HOH . J 4 HOH B 28 111 111 HOH HOH . J 4 HOH B 29 116 116 HOH HOH . J 4 HOH B 30 136 136 HOH HOH . J 4 HOH B 31 152 152 HOH HOH . J 4 HOH B 32 350 2 HOH HOH . J 4 HOH B 33 351 4 HOH HOH . K 4 HOH C 1 9 9 HOH HOH . K 4 HOH C 2 58 58 HOH HOH . K 4 HOH C 3 350 3 HOH HOH . L 4 HOH D 1 29 29 HOH HOH . L 4 HOH D 2 52 52 HOH HOH . L 4 HOH D 3 59 59 HOH HOH . L 4 HOH D 4 67 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -28.893 _atom_site.Cartn_y 25.685 _atom_site.Cartn_z -18.031 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 4 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #