data_3FX8 # _model_server_result.job_id QDOhxKfSZ3TW-7QGnNm_3A _model_server_result.datetime_utc '2025-04-07 17:17:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":211}' # _entry.id 3FX8 # _exptl.entry_id 3FX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.492 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FX8 _cell.length_a 49.249 _cell.length_b 49.249 _cell.length_c 49.249 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_467 z-1/2,-x+3/2,-y+2 0 0 1 -1 0 0 0 -1 0 -24.6245 73.8735 98.498 3 'crystal symmetry operation' 12_675 -y+3/2,-z+2,x+1/2 0 -1 0 0 0 -1 1 0 0 73.8735 98.498 24.6245 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B FE FE2 . C FE2 101 1_555 F N11 5PM . C 5PM 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 B FE FE2 . C FE2 101 1_555 F N12 5PM . C 5PM 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 C FE FE2 . C FE2 102 1_555 F N13 5PM . C 5PM 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 C FE FE2 . C FE2 102 1_555 F N14 5PM . C 5PM 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 D FE FE2 . C FE2 201 1_555 G N11 5PM . C 5PM 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc6 D FE FE2 . C FE2 201 1_555 G N12 5PM . C 5PM 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc7 E FE FE2 . C FE2 202 1_555 G N13 5PM . C 5PM 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc8 E FE FE2 . C FE2 202 1_555 G N14 5PM . C 5PM 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 C DC 1 1_555 A N1 DG 6 C DG 6 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 C DC 1 1_555 A O6 DG 6 C DG 6 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 C DC 1 1_555 A N2 DG 6 C DG 6 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 C DG 2 1_555 A N3 DC 5 C DC 5 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 C DG 2 1_555 A O2 DC 5 C DC 5 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 C DG 2 1_555 A N4 DC 5 C DC 5 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 C DT 3 1_555 A N1 DA 4 C DA 4 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 C DT 3 1_555 A N6 DA 4 C DA 4 6_467 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C24 H18 N4 S' _chem_comp.formula_weight 394.492 _chem_comp.id 5PM _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A N11 5PM doub 1 n y N11 C1E 5PM sing 2 n y C1F N12 5PM doub 3 n n N12 C1G 5PM sing 4 n n C1Q N13 5PM sing 5 n n N13 C1T 5PM doub 6 n n N14 C1Y 5PM doub 7 n y N14 C1U 5PM sing 8 n y C1B C1A 5PM sing 9 n y C1A H1A 5PM sing 10 n n C1B C1C 5PM doub 11 n y C1B H1B 5PM sing 12 n n C1C C1D 5PM sing 13 n y C1C H1C 5PM sing 14 n n C1D C1E 5PM doub 15 n y C1D H1D 5PM sing 16 n n C1E C1F 5PM sing 17 n n C1F H1F 5PM sing 18 n n C1G C1L 5PM doub 19 n y C1G C1H 5PM sing 20 n y C1H C1I 5PM doub 21 n y C1H H1H 5PM sing 22 n n C1I C1J 5PM sing 23 n y C1I H1I 5PM sing 24 n n C1K C1J 5PM doub 25 n y C1J S1M 5PM sing 26 n n C1L C1K 5PM sing 27 n y C1K H1K 5PM sing 28 n n C1L H1L 5PM sing 29 n n S1M C1N 5PM sing 30 n n C1S C1N 5PM doub 31 n y C1N C1O 5PM sing 32 n y C1O C1P 5PM doub 33 n y C1O H1O 5PM sing 34 n n C1Q C1P 5PM sing 35 n y C1P H1P 5PM sing 36 n n C1R C1Q 5PM doub 37 n y C1S C1R 5PM sing 38 n y C1R H1R 5PM sing 39 n n C1S H1S 5PM sing 40 n n C1T C1U 5PM sing 41 n n C1T H1T 5PM sing 42 n n C1U C1V 5PM doub 43 n y C1V C1W 5PM sing 44 n y C1V H1V 5PM sing 45 n n C1X C1W 5PM doub 46 n y C1W H1W 5PM sing 47 n n C1Y C1X 5PM sing 48 n y C1X H1X 5PM sing 49 n n C1Y H1Y 5PM sing 50 n n # _atom_sites.entry_id 3FX8 _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 C 1 101 1 FE2 5PM . C 2 FE2 C 1 102 1 FE2 5PM . D 2 FE2 C 1 201 1 FE2 5PM . E 2 FE2 C 1 202 1 FE2 5PM . F 3 5PM C 1 111 1 5PM 5PM . G 3 5PM C 1 211 1 5PM 5PM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N11 5PM . . . G 3 4.186 67.99 28.134 1 58.7 ? N11 5PM 211 C 1 HETATM 2 N N12 5PM . . . G 3 4.4 67.15 30.548 1 62.28 ? N12 5PM 211 C 1 HETATM 3 N N13 5PM . . . G 3 10.551 63.528 37.235 1 70.6 ? N13 5PM 211 C 1 HETATM 4 N N14 5PM . . . G 3 13.015 62.879 37.597 1 83.41 ? N14 5PM 211 C 1 HETATM 5 C C1A 5PM . . . G 3 4.109 68.475 26.896 1 63.71 ? C1A 5PM 211 C 1 HETATM 6 C C1B 5PM . . . G 3 3.452 67.841 25.834 1 46 ? C1B 5PM 211 C 1 HETATM 7 C C1C 5PM . . . G 3 2.847 66.672 26.092 1 48.64 ? C1C 5PM 211 C 1 HETATM 8 C C1D 5PM . . . G 3 2.905 66.151 27.368 1 55.25 ? C1D 5PM 211 C 1 HETATM 9 C C1E 5PM . . . G 3 3.588 66.815 28.36 1 56.63 ? C1E 5PM 211 C 1 HETATM 10 C C1F 5PM . . . G 3 3.733 66.401 29.742 1 58.47 ? C1F 5PM 211 C 1 HETATM 11 C C1G 5PM . . . G 3 4.542 66.679 31.918 1 65.44 ? C1G 5PM 211 C 1 HETATM 12 C C1H 5PM . . . G 3 3.869 67.224 32.987 1 55.57 ? C1H 5PM 211 C 1 HETATM 13 C C1I 5PM . . . G 3 4.038 66.696 34.276 1 52.23 ? C1I 5PM 211 C 1 HETATM 14 C C1J 5PM . . . G 3 4.912 65.663 34.525 1 66.51 ? C1J 5PM 211 C 1 HETATM 15 C C1K 5PM . . . G 3 5.586 65.111 33.423 1 58.39 ? C1K 5PM 211 C 1 HETATM 16 C C1L 5PM . . . G 3 5.401 65.618 32.141 1 57.69 ? C1L 5PM 211 C 1 HETATM 17 S S1M 5PM . . . G 3 5.165 65.105 35.908 1 68.59 ? S1M 5PM 211 C 1 HETATM 18 C C1N 5PM . . . G 3 6.566 64.654 36.268 1 70.18 ? C1N 5PM 211 C 1 HETATM 19 C C1O 5PM . . . G 3 6.839 63.424 36.815 1 70.93 ? C1O 5PM 211 C 1 HETATM 20 C C1P 5PM . . . G 3 8.127 63.044 37.164 1 73.63 ? C1P 5PM 211 C 1 HETATM 21 C C1Q 5PM . . . G 3 9.17 63.881 36.936 1 72.27 ? C1Q 5PM 211 C 1 HETATM 22 C C1R 5PM . . . G 3 8.926 65.084 36.362 1 70.15 ? C1R 5PM 211 C 1 HETATM 23 C C1S 5PM . . . G 3 7.641 65.461 36.053 1 70.27 ? C1S 5PM 211 C 1 HETATM 24 C C1T 5PM . . . G 3 11.153 64.232 38.116 1 75.48 ? C1T 5PM 211 C 1 HETATM 25 C C1U 5PM . . . G 3 12.536 63.907 38.378 1 84.73 ? C1U 5PM 211 C 1 HETATM 26 C C1V 5PM . . . G 3 13.328 64.543 39.333 1 97.3 ? C1V 5PM 211 C 1 HETATM 27 C C1W 5PM . . . G 3 14.638 64.138 39.486 1 100.25 ? C1W 5PM 211 C 1 HETATM 28 C C1X 5PM . . . G 3 15.1 63.117 38.668 1 98.7 ? C1X 5PM 211 C 1 HETATM 29 C C1Y 5PM . . . G 3 14.285 62.521 37.739 1 89.95 ? C1Y 5PM 211 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #