data_3FY0 # _model_server_result.job_id 25YYZ8wR2N3AmAy0nJApxw _model_server_result.datetime_utc '2024-11-22 13:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 3FY0 # _exptl.entry_id 3FY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ruthenium pyridocarbazole' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FY0 _cell.length_a 53.05 _cell.length_b 102.66 _cell.length_c 122.341 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 174 A SER 422 1_555 A N TPO 175 A TPO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TPO 175 A TPO 423 1_555 A N MET 176 A MET 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C23 H13 N3 O4 Ru' _chem_comp.formula_weight 496.437 _chem_comp.id DW1 _chem_comp.mon_nstd_flag . _chem_comp.name 'Ruthenium pyridocarbazole' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C10 DW1 trip 83 n n RU C10 DW1 sing 84 n n C13 RU DW1 sing 85 n n RU N20 DW1 sing 86 n n RU N18 DW1 sing 87 n n C13 C12 DW1 sing 88 n n C12 C17 DW1 doub 89 n n C12 H12 DW1 sing 90 n n C13 C14 DW1 sing 91 n n C13 H13 DW1 sing 92 n n C14 C16 DW1 doub 93 n n C14 H14 DW1 sing 94 n n C17 C16 DW1 sing 95 n n C16 H16 DW1 sing 96 n n C17 H17 DW1 sing 97 n n C6 N20 DW1 sing 98 n n N20 C7 DW1 sing 99 n n C6 C5 DW1 doub 100 n n C6 H6 DW1 sing 101 n n C5 C4 DW1 sing 102 n n C5 H5 DW1 sing 103 n n C4 C3 DW1 doub 104 n n C4 H4 DW1 sing 105 n n N18 C22 DW1 doub 106 n n N18 C21 DW1 sing 107 n n C23 C22 DW1 sing 108 n n C22 C27 DW1 sing 109 n n C27 C26 DW1 sing 110 n n C27 C28 DW1 doub 111 n n C25 C26 DW1 doub 112 n n C26 H26 DW1 sing 113 n n C24 C25 DW1 sing 114 n n C25 O15 DW1 sing 115 n n C23 C24 DW1 doub 116 n n C24 H24 DW1 sing 117 n n C23 H23 DW1 sing 118 n n O15 HO15 DW1 sing 119 n n C21 C28 DW1 sing 120 n n C28 C29 DW1 sing 121 n n C21 C7 DW1 doub 122 n n C7 C3 DW1 sing 123 n n C3 C2 DW1 sing 124 n n C29 C2 DW1 doub 125 n n C29 C30 DW1 sing 126 n n C2 C1 DW1 sing 127 n n C30 O8 DW1 doub 128 n n C30 N19 DW1 sing 129 n n C1 N19 DW1 sing 130 n n N19 HN19 DW1 sing 131 n n C1 O9 DW1 doub 132 n n # _atom_sites.entry_id 3FY0 _atom_sites.fract_transf_matrix[1][1] 0.01885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DW1 A 1 200 200 DW1 DW1 . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 18 18 HOH HOH . C 3 HOH A 17 19 19 HOH HOH . C 3 HOH A 18 20 20 HOH HOH . C 3 HOH A 19 21 21 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 31 31 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 35 35 HOH HOH . C 3 HOH A 32 36 36 HOH HOH . C 3 HOH A 33 37 37 HOH HOH . C 3 HOH A 34 38 38 HOH HOH . C 3 HOH A 35 39 39 HOH HOH . C 3 HOH A 36 40 40 HOH HOH . C 3 HOH A 37 42 42 HOH HOH . C 3 HOH A 38 43 43 HOH HOH . C 3 HOH A 39 44 44 HOH HOH . C 3 HOH A 40 45 45 HOH HOH . C 3 HOH A 41 46 46 HOH HOH . C 3 HOH A 42 47 47 HOH HOH . C 3 HOH A 43 50 50 HOH HOH . C 3 HOH A 44 51 51 HOH HOH . C 3 HOH A 45 52 52 HOH HOH . C 3 HOH A 46 53 53 HOH HOH . C 3 HOH A 47 54 54 HOH HOH . C 3 HOH A 48 55 55 HOH HOH . C 3 HOH A 49 56 56 HOH HOH . C 3 HOH A 50 57 57 HOH HOH . C 3 HOH A 51 58 58 HOH HOH . C 3 HOH A 52 59 59 HOH HOH . C 3 HOH A 53 60 60 HOH HOH . C 3 HOH A 54 61 61 HOH HOH . C 3 HOH A 55 62 62 HOH HOH . C 3 HOH A 56 63 63 HOH HOH . C 3 HOH A 57 65 65 HOH HOH . C 3 HOH A 58 66 66 HOH HOH . C 3 HOH A 59 67 67 HOH HOH . C 3 HOH A 60 68 68 HOH HOH . C 3 HOH A 61 69 69 HOH HOH . C 3 HOH A 62 70 70 HOH HOH . C 3 HOH A 63 71 71 HOH HOH . C 3 HOH A 64 72 72 HOH HOH . C 3 HOH A 65 73 73 HOH HOH . C 3 HOH A 66 74 74 HOH HOH . C 3 HOH A 67 75 75 HOH HOH . C 3 HOH A 68 76 76 HOH HOH . C 3 HOH A 69 77 77 HOH HOH . C 3 HOH A 70 78 78 HOH HOH . C 3 HOH A 71 79 79 HOH HOH . C 3 HOH A 72 80 80 HOH HOH . C 3 HOH A 73 81 81 HOH HOH . C 3 HOH A 74 82 82 HOH HOH . C 3 HOH A 75 83 83 HOH HOH . C 3 HOH A 76 84 84 HOH HOH . C 3 HOH A 77 85 85 HOH HOH . C 3 HOH A 78 87 87 HOH HOH . C 3 HOH A 79 88 88 HOH HOH . C 3 HOH A 80 89 89 HOH HOH . C 3 HOH A 81 91 91 HOH HOH . C 3 HOH A 82 92 92 HOH HOH . C 3 HOH A 83 93 93 HOH HOH . C 3 HOH A 84 94 94 HOH HOH . C 3 HOH A 85 95 95 HOH HOH . C 3 HOH A 86 96 96 HOH HOH . C 3 HOH A 87 97 97 HOH HOH . C 3 HOH A 88 98 98 HOH HOH . C 3 HOH A 89 99 99 HOH HOH . C 3 HOH A 90 100 100 HOH HOH . C 3 HOH A 91 101 101 HOH HOH . C 3 HOH A 92 102 102 HOH HOH . C 3 HOH A 93 103 103 HOH HOH . C 3 HOH A 94 104 104 HOH HOH . C 3 HOH A 95 105 105 HOH HOH . C 3 HOH A 96 106 106 HOH HOH . C 3 HOH A 97 107 107 HOH HOH . C 3 HOH A 98 108 108 HOH HOH . C 3 HOH A 99 109 109 HOH HOH . C 3 HOH A 100 110 110 HOH HOH . C 3 HOH A 101 111 111 HOH HOH . C 3 HOH A 102 113 113 HOH HOH . C 3 HOH A 103 114 114 HOH HOH . C 3 HOH A 104 115 115 HOH HOH . C 3 HOH A 105 116 116 HOH HOH . C 3 HOH A 106 120 120 HOH HOH . C 3 HOH A 107 121 121 HOH HOH . C 3 HOH A 108 122 122 HOH HOH . C 3 HOH A 109 123 123 HOH HOH . C 3 HOH A 110 125 125 HOH HOH . C 3 HOH A 111 126 126 HOH HOH . C 3 HOH A 112 127 127 HOH HOH . C 3 HOH A 113 128 128 HOH HOH . C 3 HOH A 114 129 129 HOH HOH . C 3 HOH A 115 130 130 HOH HOH . C 3 HOH A 116 131 131 HOH HOH . C 3 HOH A 117 132 132 HOH HOH . C 3 HOH A 118 133 133 HOH HOH . C 3 HOH A 119 134 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 DW1 . . . B 2 12.586 13.096 42.065 1 49.73 ? O11 DW1 200 A 1 HETATM 2 C C10 DW1 . . . B 2 12.66 14.24 42.094 1 49.78 ? C10 DW1 200 A 1 HETATM 3 RU RU DW1 . . . B 2 12.859 16.087 42.066 1 49.97 ? RU DW1 200 A 1 HETATM 4 C C12 DW1 . . . B 2 12.165 16.762 40.108 1 50.97 ? C12 DW1 200 A 1 HETATM 5 C C13 DW1 . . . B 2 13.386 16.079 39.957 1 51.3 ? C13 DW1 200 A 1 HETATM 6 C C14 DW1 . . . B 2 14.376 16.796 40.63 1 50.52 ? C14 DW1 200 A 1 HETATM 7 C C16 DW1 . . . B 2 13.777 17.928 41.182 1 50.15 ? C16 DW1 200 A 1 HETATM 8 C C17 DW1 . . . B 2 12.413 17.911 40.863 1 50.51 ? C17 DW1 200 A 1 HETATM 9 N N20 DW1 . . . B 2 14.28 15.996 43.683 1 50.19 ? N20 DW1 200 A 1 HETATM 10 C C6 DW1 . . . B 2 15.63 15.859 43.63 1 49.9 ? C6 DW1 200 A 1 HETATM 11 C C5 DW1 . . . B 2 16.365 15.823 44.833 1 49.84 ? C5 DW1 200 A 1 HETATM 12 C C4 DW1 . . . B 2 15.751 15.927 46.101 1 49.67 ? C4 DW1 200 A 1 HETATM 13 N N18 DW1 . . . B 2 11.637 16.258 43.808 1 50.11 ? N18 DW1 200 A 1 HETATM 14 C C22 DW1 . . . B 2 10.379 16.406 44.073 1 49.95 ? C22 DW1 200 A 1 HETATM 15 C C27 DW1 . . . B 2 10.179 16.478 45.46 1 49.75 ? C27 DW1 200 A 1 HETATM 16 C C26 DW1 . . . B 2 8.903 16.634 46.014 1 49.93 ? C26 DW1 200 A 1 HETATM 17 C C25 DW1 . . . B 2 7.784 16.72 45.156 1 49.82 ? C25 DW1 200 A 1 HETATM 18 C C24 DW1 . . . B 2 7.986 16.649 43.76 1 49.83 ? C24 DW1 200 A 1 HETATM 19 C C23 DW1 . . . B 2 9.274 16.493 43.214 1 50.01 ? C23 DW1 200 A 1 HETATM 20 O O15 DW1 . . . B 2 6.504 16.859 45.619 1 49.63 ? O15 DW1 200 A 1 HETATM 21 C C28 DW1 . . . B 2 11.507 16.362 46.021 1 49.8 ? C28 DW1 200 A 1 HETATM 22 C C21 DW1 . . . B 2 12.303 16.246 44.902 1 49.87 ? C21 DW1 200 A 1 HETATM 23 C C7 DW1 . . . B 2 13.678 16.104 44.926 1 49.95 ? C7 DW1 200 A 1 HETATM 24 C C3 DW1 . . . B 2 14.356 16.073 46.161 1 49.87 ? C3 DW1 200 A 1 HETATM 25 C C29 DW1 . . . B 2 12.151 16.342 47.272 1 49.85 ? C29 DW1 200 A 1 HETATM 26 C C2 DW1 . . . B 2 13.559 16.203 47.333 1 49.97 ? C2 DW1 200 A 1 HETATM 27 C C30 DW1 . . . B 2 11.684 16.437 48.59 1 49.71 ? C30 DW1 200 A 1 HETATM 28 O O8 DW1 . . . B 2 10.54 16.562 48.965 1 49.91 ? O8 DW1 200 A 1 HETATM 29 N N19 DW1 . . . B 2 12.735 16.364 49.455 1 49.61 ? N19 DW1 200 A 1 HETATM 30 C C1 DW1 . . . B 2 13.876 16.22 48.699 1 49.99 ? C1 DW1 200 A 1 HETATM 31 O O9 DW1 . . . B 2 14.972 16.124 49.194 1 49.89 ? O9 DW1 200 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 483 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #