data_3FY8 # _model_server_result.job_id oDNDY5D4C7hETRTtQ2j4Bw _model_server_result.datetime_utc '2024-12-21 12:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FY8 # _exptl.entry_id 3FY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FY8 _cell.length_a 79.567 _cell.length_b 79.567 _cell.length_c 108.958 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O3' _chem_comp.formula_weight 354.403 _chem_comp.id XCF _chem_comp.mon_nstd_flag . _chem_comp.name 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C3 XCF sing 445 n n C3 N5 XCF doub 446 n y C3 N2 XCF sing 447 n y N5 C6 XCF sing 448 n y N2 C1 XCF doub 449 n y C1 C8 XCF sing 450 n y C8 C6 XCF doub 451 n y C8 C9 XCF sing 452 n n C6 N7 XCF sing 453 n n C9 C10 XCF sing 454 n n C10 C11 XCF doub 455 n y C10 C21 XCF sing 456 n y C11 C27 XCF sing 457 n n C11 C12 XCF sing 458 n y C27 C28 XCF doub 459 n n C28 C14 XCF sing 460 n n C14 C24 XCF sing 461 n n C14 O13 XCF sing 462 n n C24 C25 XCF sing 463 n n C24 C26 XCF sing 464 n n C25 C26 XCF sing 465 n n O13 C12 XCF sing 466 n n C12 C15 XCF doub 467 n y C15 O16 XCF sing 468 n n C15 C18 XCF sing 469 n y O16 C17 XCF sing 470 n n C18 C21 XCF doub 471 n y C18 O19 XCF sing 472 n n O19 C20 XCF sing 473 n n N4 HN4 XCF sing 474 n n N4 HN4A XCF sing 475 n n C1 H1 XCF sing 476 n n N7 HN7 XCF sing 477 n n N7 HN7A XCF sing 478 n n C9 H9 XCF sing 479 n n C9 H9A XCF sing 480 n n C27 H27 XCF sing 481 n n C28 H28 XCF sing 482 n n C14 H14 XCF sing 483 n n C24 H24 XCF sing 484 n n C25 H25 XCF sing 485 n n C25 H25A XCF sing 486 n n C26 H26 XCF sing 487 n n C26 H26A XCF sing 488 n n C17 H17 XCF sing 489 n n C17 H17A XCF sing 490 n n C17 H17B XCF sing 491 n n C21 H21 XCF sing 492 n n C20 H20 XCF sing 493 n n C20 H20A XCF sing 494 n n C20 H20B XCF sing 495 n n # _atom_sites.entry_id 3FY8 _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 XCF X 1 300 300 XCF I2H . D 4 HOH X 1 159 159 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 163 HOH HOH . D 4 HOH X 6 164 164 HOH HOH . D 4 HOH X 7 165 165 HOH HOH . D 4 HOH X 8 166 166 HOH HOH . D 4 HOH X 9 167 167 HOH HOH . D 4 HOH X 10 168 168 HOH HOH . D 4 HOH X 11 169 169 HOH HOH . D 4 HOH X 12 170 170 HOH HOH . D 4 HOH X 13 171 171 HOH HOH . D 4 HOH X 14 172 172 HOH HOH . D 4 HOH X 15 173 173 HOH HOH . D 4 HOH X 16 174 174 HOH HOH . D 4 HOH X 17 175 175 HOH HOH . D 4 HOH X 18 176 176 HOH HOH . D 4 HOH X 19 177 1 HOH HOH . D 4 HOH X 20 178 3 HOH HOH . D 4 HOH X 21 179 4 HOH HOH . D 4 HOH X 22 180 5 HOH HOH . D 4 HOH X 23 181 6 HOH HOH . D 4 HOH X 24 182 7 HOH HOH . D 4 HOH X 25 183 8 HOH HOH . D 4 HOH X 26 184 9 HOH HOH . D 4 HOH X 27 185 10 HOH HOH . D 4 HOH X 28 186 11 HOH HOH . D 4 HOH X 29 187 13 HOH HOH . D 4 HOH X 30 188 14 HOH HOH . D 4 HOH X 31 189 16 HOH HOH . D 4 HOH X 32 190 17 HOH HOH . D 4 HOH X 33 191 18 HOH HOH . D 4 HOH X 34 192 19 HOH HOH . D 4 HOH X 35 193 20 HOH HOH . D 4 HOH X 36 194 21 HOH HOH . D 4 HOH X 37 195 22 HOH HOH . D 4 HOH X 38 196 24 HOH HOH . D 4 HOH X 39 197 25 HOH HOH . D 4 HOH X 40 198 26 HOH HOH . D 4 HOH X 41 199 27 HOH HOH . D 4 HOH X 42 200 29 HOH HOH . D 4 HOH X 43 201 31 HOH HOH . D 4 HOH X 44 202 32 HOH HOH . D 4 HOH X 45 203 33 HOH HOH . D 4 HOH X 46 204 34 HOH HOH . D 4 HOH X 47 205 35 HOH HOH . D 4 HOH X 48 206 36 HOH HOH . D 4 HOH X 49 207 37 HOH HOH . D 4 HOH X 50 208 38 HOH HOH . D 4 HOH X 51 209 39 HOH HOH . D 4 HOH X 52 210 40 HOH HOH . D 4 HOH X 53 211 41 HOH HOH . D 4 HOH X 54 212 42 HOH HOH . D 4 HOH X 55 213 43 HOH HOH . D 4 HOH X 56 214 44 HOH HOH . D 4 HOH X 57 215 45 HOH HOH . D 4 HOH X 58 216 46 HOH HOH . D 4 HOH X 59 217 47 HOH HOH . D 4 HOH X 60 218 49 HOH HOH . D 4 HOH X 61 219 50 HOH HOH . D 4 HOH X 62 220 52 HOH HOH . D 4 HOH X 63 221 53 HOH HOH . D 4 HOH X 64 222 54 HOH HOH . D 4 HOH X 65 223 55 HOH HOH . D 4 HOH X 66 224 56 HOH HOH . D 4 HOH X 67 225 57 HOH HOH . D 4 HOH X 68 226 58 HOH HOH . D 4 HOH X 69 227 60 HOH HOH . D 4 HOH X 70 228 62 HOH HOH . D 4 HOH X 71 229 63 HOH HOH . D 4 HOH X 72 230 64 HOH HOH . D 4 HOH X 73 231 65 HOH HOH . D 4 HOH X 74 232 66 HOH HOH . D 4 HOH X 75 233 68 HOH HOH . D 4 HOH X 76 234 69 HOH HOH . D 4 HOH X 77 235 70 HOH HOH . D 4 HOH X 78 236 73 HOH HOH . D 4 HOH X 79 237 74 HOH HOH . D 4 HOH X 80 238 75 HOH HOH . D 4 HOH X 81 239 76 HOH HOH . D 4 HOH X 82 240 77 HOH HOH . D 4 HOH X 83 241 78 HOH HOH . D 4 HOH X 84 242 79 HOH HOH . D 4 HOH X 85 243 80 HOH HOH . D 4 HOH X 86 244 81 HOH HOH . D 4 HOH X 87 245 82 HOH HOH . D 4 HOH X 88 246 83 HOH HOH . D 4 HOH X 89 247 84 HOH HOH . D 4 HOH X 90 248 85 HOH HOH . D 4 HOH X 91 249 86 HOH HOH . D 4 HOH X 92 250 87 HOH HOH . D 4 HOH X 93 251 88 HOH HOH . D 4 HOH X 94 252 89 HOH HOH . D 4 HOH X 95 253 90 HOH HOH . D 4 HOH X 96 254 91 HOH HOH . D 4 HOH X 97 255 92 HOH HOH . D 4 HOH X 98 256 93 HOH HOH . D 4 HOH X 99 257 94 HOH HOH . D 4 HOH X 100 258 95 HOH HOH . D 4 HOH X 101 259 96 HOH HOH . D 4 HOH X 102 260 98 HOH HOH . D 4 HOH X 103 261 99 HOH HOH . D 4 HOH X 104 262 100 HOH HOH . D 4 HOH X 105 263 102 HOH HOH . D 4 HOH X 106 264 103 HOH HOH . D 4 HOH X 107 265 104 HOH HOH . D 4 HOH X 108 266 105 HOH HOH . D 4 HOH X 109 267 106 HOH HOH . D 4 HOH X 110 268 107 HOH HOH . D 4 HOH X 111 269 108 HOH HOH . D 4 HOH X 112 270 109 HOH HOH . D 4 HOH X 113 271 110 HOH HOH . D 4 HOH X 114 272 111 HOH HOH . D 4 HOH X 115 273 112 HOH HOH . D 4 HOH X 116 274 113 HOH HOH . D 4 HOH X 117 275 114 HOH HOH . D 4 HOH X 118 276 116 HOH HOH . D 4 HOH X 119 277 117 HOH HOH . D 4 HOH X 120 278 118 HOH HOH . D 4 HOH X 121 279 119 HOH HOH . D 4 HOH X 122 280 120 HOH HOH . D 4 HOH X 123 281 122 HOH HOH . D 4 HOH X 124 282 123 HOH HOH . D 4 HOH X 125 283 124 HOH HOH . D 4 HOH X 126 284 125 HOH HOH . D 4 HOH X 127 285 127 HOH HOH . D 4 HOH X 128 286 128 HOH HOH . D 4 HOH X 129 287 129 HOH HOH . D 4 HOH X 130 288 130 HOH HOH . D 4 HOH X 131 289 131 HOH HOH . D 4 HOH X 132 290 132 HOH HOH . D 4 HOH X 133 291 133 HOH HOH . D 4 HOH X 134 292 134 HOH HOH . D 4 HOH X 135 293 135 HOH HOH . D 4 HOH X 136 294 136 HOH HOH . D 4 HOH X 137 295 137 HOH HOH . D 4 HOH X 138 296 138 HOH HOH . D 4 HOH X 139 297 140 HOH HOH . D 4 HOH X 140 298 141 HOH HOH . D 4 HOH X 141 299 142 HOH HOH . D 4 HOH X 142 302 143 HOH HOH . D 4 HOH X 143 303 144 HOH HOH . D 4 HOH X 144 304 145 HOH HOH . D 4 HOH X 145 305 146 HOH HOH . D 4 HOH X 146 306 147 HOH HOH . D 4 HOH X 147 307 148 HOH HOH . D 4 HOH X 148 308 149 HOH HOH . D 4 HOH X 149 309 150 HOH HOH . D 4 HOH X 150 310 151 HOH HOH . D 4 HOH X 151 311 152 HOH HOH . D 4 HOH X 152 312 153 HOH HOH . D 4 HOH X 153 313 154 HOH HOH . D 4 HOH X 154 314 155 HOH HOH . D 4 HOH X 155 315 156 HOH HOH . D 4 HOH X 156 316 157 HOH HOH . D 4 HOH X 157 317 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 XCF . . . C 3 26.646 7.34 41.583 1 17.82 ? N4 XCF 300 X 1 HETATM 2 C C3 XCF . . . C 3 27.304 8.526 41.614 1 17.96 ? C3 XCF 300 X 1 HETATM 3 N N5 XCF . . . C 3 26.948 9.47 40.723 1 17.74 ? N5 XCF 300 X 1 HETATM 4 N N2 XCF . . . C 3 28.292 8.741 42.501 1 17.44 ? N2 XCF 300 X 1 HETATM 5 C C1 XCF . . . C 3 28.941 9.93 42.502 1 18.1 ? C1 XCF 300 X 1 HETATM 6 C C8 XCF . . . C 3 28.582 10.935 41.589 1 17.9 ? C8 XCF 300 X 1 HETATM 7 C C6 XCF . . . C 3 27.552 10.659 40.688 1 17.69 ? C6 XCF 300 X 1 HETATM 8 N N7 XCF . . . C 3 27.131 11.56 39.765 1 17.38 ? N7 XCF 300 X 1 HETATM 9 C C9 XCF . . . C 3 29.29 12.291 41.541 1 18.07 ? C9 XCF 300 X 1 HETATM 10 C C10 XCF . . . C 3 30.304 12.537 42.645 1 18.23 ? C10 XCF 300 X 1 HETATM 11 C C11 XCF . . . C 3 31.549 11.926 42.677 1 18.62 ? C11 XCF 300 X 1 HETATM 12 C C27 XCF . . . C 3 32.106 11.113 41.879 1 18.17 ? C27 XCF 300 X 1 HETATM 13 C C28 XCF . . . C 3 33.101 10.5 41.483 1 18.32 ? C28 XCF 300 X 1 HETATM 14 C C14 XCF . . . C 3 34.254 10.955 42.356 1 19.31 ? C14 XCF 300 X 1 HETATM 15 C C24 XCF . . . C 3 35.026 12.114 41.707 1 19.77 ? C24 XCF 300 X 1 HETATM 16 C C25 XCF . . . C 3 36.441 11.966 41.155 1 20.32 ? C25 XCF 300 X 1 HETATM 17 C C26 XCF . . . C 3 36.237 12.52 42.559 1 19.88 ? C26 XCF 300 X 1 HETATM 18 O O13 XCF . . . C 3 33.71 11.48 43.613 1 18.54 ? O13 XCF 300 X 1 HETATM 19 C C12 XCF . . . C 3 32.485 12.166 43.689 1 18.66 ? C12 XCF 300 X 1 HETATM 20 C C15 XCF . . . C 3 32.181 13.044 44.717 1 18.32 ? C15 XCF 300 X 1 HETATM 21 O O16 XCF . . . C 3 33.085 13.283 45.723 1 18.12 ? O16 XCF 300 X 1 HETATM 22 C C17 XCF . . . C 3 34.478 13.435 45.445 1 17.95 ? C17 XCF 300 X 1 HETATM 23 C C18 XCF . . . C 3 30.937 13.67 44.723 1 18.39 ? C18 XCF 300 X 1 HETATM 24 C C21 XCF . . . C 3 30.014 13.421 43.691 1 18.53 ? C21 XCF 300 X 1 HETATM 25 O O19 XCF . . . C 3 30.629 14.546 45.74 1 17.73 ? O19 XCF 300 X 1 HETATM 26 C C20 XCF . . . C 3 29.313 15.093 45.827 1 18.4 ? C20 XCF 300 X 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1290 _model_server_stats.encode_time_ms 35 _model_server_stats.element_count 26 #