data_3FY8 # _model_server_result.job_id jWC2AURYZR4MefrCY8S-hw _model_server_result.datetime_utc '2024-12-21 12:13:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3FY8 # _exptl.entry_id 3FY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FY8 _cell.length_a 79.567 _cell.length_b 79.567 _cell.length_c 108.958 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 3FY8 _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 XCF X 1 300 300 XCF I2H . D 4 HOH X 1 159 159 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 163 HOH HOH . D 4 HOH X 6 164 164 HOH HOH . D 4 HOH X 7 165 165 HOH HOH . D 4 HOH X 8 166 166 HOH HOH . D 4 HOH X 9 167 167 HOH HOH . D 4 HOH X 10 168 168 HOH HOH . D 4 HOH X 11 169 169 HOH HOH . D 4 HOH X 12 170 170 HOH HOH . D 4 HOH X 13 171 171 HOH HOH . D 4 HOH X 14 172 172 HOH HOH . D 4 HOH X 15 173 173 HOH HOH . D 4 HOH X 16 174 174 HOH HOH . D 4 HOH X 17 175 175 HOH HOH . D 4 HOH X 18 176 176 HOH HOH . D 4 HOH X 19 177 1 HOH HOH . D 4 HOH X 20 178 3 HOH HOH . D 4 HOH X 21 179 4 HOH HOH . D 4 HOH X 22 180 5 HOH HOH . D 4 HOH X 23 181 6 HOH HOH . D 4 HOH X 24 182 7 HOH HOH . D 4 HOH X 25 183 8 HOH HOH . D 4 HOH X 26 184 9 HOH HOH . D 4 HOH X 27 185 10 HOH HOH . D 4 HOH X 28 186 11 HOH HOH . D 4 HOH X 29 187 13 HOH HOH . D 4 HOH X 30 188 14 HOH HOH . D 4 HOH X 31 189 16 HOH HOH . D 4 HOH X 32 190 17 HOH HOH . D 4 HOH X 33 191 18 HOH HOH . D 4 HOH X 34 192 19 HOH HOH . D 4 HOH X 35 193 20 HOH HOH . D 4 HOH X 36 194 21 HOH HOH . D 4 HOH X 37 195 22 HOH HOH . D 4 HOH X 38 196 24 HOH HOH . D 4 HOH X 39 197 25 HOH HOH . D 4 HOH X 40 198 26 HOH HOH . D 4 HOH X 41 199 27 HOH HOH . D 4 HOH X 42 200 29 HOH HOH . D 4 HOH X 43 201 31 HOH HOH . D 4 HOH X 44 202 32 HOH HOH . D 4 HOH X 45 203 33 HOH HOH . D 4 HOH X 46 204 34 HOH HOH . D 4 HOH X 47 205 35 HOH HOH . D 4 HOH X 48 206 36 HOH HOH . D 4 HOH X 49 207 37 HOH HOH . D 4 HOH X 50 208 38 HOH HOH . D 4 HOH X 51 209 39 HOH HOH . D 4 HOH X 52 210 40 HOH HOH . D 4 HOH X 53 211 41 HOH HOH . D 4 HOH X 54 212 42 HOH HOH . D 4 HOH X 55 213 43 HOH HOH . D 4 HOH X 56 214 44 HOH HOH . D 4 HOH X 57 215 45 HOH HOH . D 4 HOH X 58 216 46 HOH HOH . D 4 HOH X 59 217 47 HOH HOH . D 4 HOH X 60 218 49 HOH HOH . D 4 HOH X 61 219 50 HOH HOH . D 4 HOH X 62 220 52 HOH HOH . D 4 HOH X 63 221 53 HOH HOH . D 4 HOH X 64 222 54 HOH HOH . D 4 HOH X 65 223 55 HOH HOH . D 4 HOH X 66 224 56 HOH HOH . D 4 HOH X 67 225 57 HOH HOH . D 4 HOH X 68 226 58 HOH HOH . D 4 HOH X 69 227 60 HOH HOH . D 4 HOH X 70 228 62 HOH HOH . D 4 HOH X 71 229 63 HOH HOH . D 4 HOH X 72 230 64 HOH HOH . D 4 HOH X 73 231 65 HOH HOH . D 4 HOH X 74 232 66 HOH HOH . D 4 HOH X 75 233 68 HOH HOH . D 4 HOH X 76 234 69 HOH HOH . D 4 HOH X 77 235 70 HOH HOH . D 4 HOH X 78 236 73 HOH HOH . D 4 HOH X 79 237 74 HOH HOH . D 4 HOH X 80 238 75 HOH HOH . D 4 HOH X 81 239 76 HOH HOH . D 4 HOH X 82 240 77 HOH HOH . D 4 HOH X 83 241 78 HOH HOH . D 4 HOH X 84 242 79 HOH HOH . D 4 HOH X 85 243 80 HOH HOH . D 4 HOH X 86 244 81 HOH HOH . D 4 HOH X 87 245 82 HOH HOH . D 4 HOH X 88 246 83 HOH HOH . D 4 HOH X 89 247 84 HOH HOH . D 4 HOH X 90 248 85 HOH HOH . D 4 HOH X 91 249 86 HOH HOH . D 4 HOH X 92 250 87 HOH HOH . D 4 HOH X 93 251 88 HOH HOH . D 4 HOH X 94 252 89 HOH HOH . D 4 HOH X 95 253 90 HOH HOH . D 4 HOH X 96 254 91 HOH HOH . D 4 HOH X 97 255 92 HOH HOH . D 4 HOH X 98 256 93 HOH HOH . D 4 HOH X 99 257 94 HOH HOH . D 4 HOH X 100 258 95 HOH HOH . D 4 HOH X 101 259 96 HOH HOH . D 4 HOH X 102 260 98 HOH HOH . D 4 HOH X 103 261 99 HOH HOH . D 4 HOH X 104 262 100 HOH HOH . D 4 HOH X 105 263 102 HOH HOH . D 4 HOH X 106 264 103 HOH HOH . D 4 HOH X 107 265 104 HOH HOH . D 4 HOH X 108 266 105 HOH HOH . D 4 HOH X 109 267 106 HOH HOH . D 4 HOH X 110 268 107 HOH HOH . D 4 HOH X 111 269 108 HOH HOH . D 4 HOH X 112 270 109 HOH HOH . D 4 HOH X 113 271 110 HOH HOH . D 4 HOH X 114 272 111 HOH HOH . D 4 HOH X 115 273 112 HOH HOH . D 4 HOH X 116 274 113 HOH HOH . D 4 HOH X 117 275 114 HOH HOH . D 4 HOH X 118 276 116 HOH HOH . D 4 HOH X 119 277 117 HOH HOH . D 4 HOH X 120 278 118 HOH HOH . D 4 HOH X 121 279 119 HOH HOH . D 4 HOH X 122 280 120 HOH HOH . D 4 HOH X 123 281 122 HOH HOH . D 4 HOH X 124 282 123 HOH HOH . D 4 HOH X 125 283 124 HOH HOH . D 4 HOH X 126 284 125 HOH HOH . D 4 HOH X 127 285 127 HOH HOH . D 4 HOH X 128 286 128 HOH HOH . D 4 HOH X 129 287 129 HOH HOH . D 4 HOH X 130 288 130 HOH HOH . D 4 HOH X 131 289 131 HOH HOH . D 4 HOH X 132 290 132 HOH HOH . D 4 HOH X 133 291 133 HOH HOH . D 4 HOH X 134 292 134 HOH HOH . D 4 HOH X 135 293 135 HOH HOH . D 4 HOH X 136 294 136 HOH HOH . D 4 HOH X 137 295 137 HOH HOH . D 4 HOH X 138 296 138 HOH HOH . D 4 HOH X 139 297 140 HOH HOH . D 4 HOH X 140 298 141 HOH HOH . D 4 HOH X 141 299 142 HOH HOH . D 4 HOH X 142 302 143 HOH HOH . D 4 HOH X 143 303 144 HOH HOH . D 4 HOH X 144 304 145 HOH HOH . D 4 HOH X 145 305 146 HOH HOH . D 4 HOH X 146 306 147 HOH HOH . D 4 HOH X 147 307 148 HOH HOH . D 4 HOH X 148 308 149 HOH HOH . D 4 HOH X 149 309 150 HOH HOH . D 4 HOH X 150 310 151 HOH HOH . D 4 HOH X 151 311 152 HOH HOH . D 4 HOH X 152 312 153 HOH HOH . D 4 HOH X 153 313 154 HOH HOH . D 4 HOH X 154 314 155 HOH HOH . D 4 HOH X 155 315 156 HOH HOH . D 4 HOH X 156 316 157 HOH HOH . D 4 HOH X 157 317 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 24.084 21.627 42.928 1 15.99 ? PA NDP 301 X 1 HETATM 2 O O1A NDP . . . B 2 25.33 20.882 42.726 1 16.76 ? O1A NDP 301 X 1 HETATM 3 O O2A NDP . . . B 2 22.91 21.126 42.177 1 15.88 ? O2A NDP 301 X 1 HETATM 4 O O5B NDP . . . B 2 24.429 23.142 42.577 1 16.82 ? O5B NDP 301 X 1 HETATM 5 C C5B NDP . . . B 2 23.491 24.176 42.725 1 17.34 ? C5B NDP 301 X 1 HETATM 6 C C4B NDP . . . B 2 24.082 25.352 41.978 1 17.99 ? C4B NDP 301 X 1 HETATM 7 O O4B NDP . . . B 2 24.138 25.089 40.593 1 17.87 ? O4B NDP 301 X 1 HETATM 8 C C3B NDP . . . B 2 23.303 26.645 42.117 1 18.49 ? C3B NDP 301 X 1 HETATM 9 O O3B NDP . . . B 2 23.673 27.311 43.297 1 19.69 ? O3B NDP 301 X 1 HETATM 10 C C2B NDP . . . B 2 23.73 27.38 40.86 1 18.71 ? C2B NDP 301 X 1 HETATM 11 O O2B NDP . . . B 2 25.021 27.928 40.997 1 18.1 ? O2B NDP 301 X 1 HETATM 12 C C1B NDP . . . B 2 23.867 26.268 39.853 1 18.88 ? C1B NDP 301 X 1 HETATM 13 N N9A NDP . . . B 2 22.645 26.115 39.064 1 19.2 ? N9A NDP 301 X 1 HETATM 14 C C8A NDP . . . B 2 21.784 25.053 39.13 1 19.3 ? C8A NDP 301 X 1 HETATM 15 N N7A NDP . . . B 2 20.792 25.256 38.231 1 19.61 ? N7A NDP 301 X 1 HETATM 16 C C5A NDP . . . B 2 21.011 26.426 37.587 1 19.39 ? C5A NDP 301 X 1 HETATM 17 C C6A NDP . . . B 2 20.31 27.09 36.59 1 19.45 ? C6A NDP 301 X 1 HETATM 18 N N6A NDP . . . B 2 19.196 26.58 36.088 1 19.28 ? N6A NDP 301 X 1 HETATM 19 N N1A NDP . . . B 2 20.777 28.293 36.124 1 19.17 ? N1A NDP 301 X 1 HETATM 20 C C2A NDP . . . B 2 21.933 28.812 36.653 1 19.25 ? C2A NDP 301 X 1 HETATM 21 N N3A NDP . . . B 2 22.63 28.153 37.639 1 19.42 ? N3A NDP 301 X 1 HETATM 22 C C4A NDP . . . B 2 22.175 26.976 38.104 1 19.38 ? C4A NDP 301 X 1 HETATM 23 O O3 NDP . . . B 2 23.836 21.607 44.502 1 16.51 ? O3 NDP 301 X 1 HETATM 24 P PN NDP . . . B 2 22.693 21.026 45.479 1 14.91 ? PN NDP 301 X 1 HETATM 25 O O1N NDP . . . B 2 21.393 21.114 44.787 1 15.8 ? O1N NDP 301 X 1 HETATM 26 O O2N NDP . . . B 2 22.918 21.685 46.779 1 15.78 ? O2N NDP 301 X 1 HETATM 27 O O5D NDP . . . B 2 23.131 19.487 45.63 1 15.83 ? O5D NDP 301 X 1 HETATM 28 C C5D NDP . . . B 2 24.426 19.19 46.078 1 14.87 ? C5D NDP 301 X 1 HETATM 29 C C4D NDP . . . B 2 24.325 17.92 46.898 1 14.98 ? C4D NDP 301 X 1 HETATM 30 O O4D NDP . . . B 2 24.245 16.823 46.004 1 14.78 ? O4D NDP 301 X 1 HETATM 31 C C3D NDP . . . B 2 25.525 17.665 47.795 1 14.25 ? C3D NDP 301 X 1 HETATM 32 O O3D NDP . . . B 2 25.065 17.161 49.029 1 14.69 ? O3D NDP 301 X 1 HETATM 33 C C2D NDP . . . B 2 26.309 16.589 47.086 1 13.81 ? C2D NDP 301 X 1 HETATM 34 O O2D NDP . . . B 2 26.995 15.821 48.044 1 13.54 ? O2D NDP 301 X 1 HETATM 35 C C1D NDP . . . B 2 25.198 15.832 46.365 1 13.64 ? C1D NDP 301 X 1 HETATM 36 N N1N NDP . . . B 2 25.569 15.036 45.17 1 12.58 ? N1N NDP 301 X 1 HETATM 37 C C2N NDP . . . B 2 25.2 13.735 45.16 1 12.86 ? C2N NDP 301 X 1 HETATM 38 C C3N NDP . . . B 2 25.492 12.909 44.072 1 12.75 ? C3N NDP 301 X 1 HETATM 39 C C7N NDP . . . B 2 25.123 11.47 44.173 1 12.39 ? C7N NDP 301 X 1 HETATM 40 O O7N NDP . . . B 2 25.126 10.656 43.035 1 12 ? O7N NDP 301 X 1 HETATM 41 N N7N NDP . . . B 2 24.782 11.001 45.37 1 13.01 ? N7N NDP 301 X 1 HETATM 42 C C4N NDP . . . B 2 26.167 13.421 42.97 1 13.01 ? C4N NDP 301 X 1 HETATM 43 C C5N NDP . . . B 2 26.545 14.765 43.003 1 13.26 ? C5N NDP 301 X 1 HETATM 44 C C6N NDP . . . B 2 26.233 15.561 44.102 1 12.94 ? C6N NDP 301 X 1 HETATM 45 P P2B NDP . . . B 2 25.268 29.438 41.435 1 15.34 ? P2B NDP 301 X 1 HETATM 46 O O1X NDP . . . B 2 24.424 30.307 40.563 1 15.87 ? O1X NDP 301 X 1 HETATM 47 O O2X NDP . . . B 2 26.741 29.667 41.229 1 17.07 ? O2X NDP 301 X 1 HETATM 48 O O3X NDP . . . B 2 24.913 29.69 42.867 1 16.98 ? O3X NDP 301 X 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #