data_3FY9 # _model_server_result.job_id DcnRcDCJ0jAcMvcINj4dvg _model_server_result.datetime_utc '2024-12-22 06:27:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FY9 # _exptl.entry_id 3FY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FY9 _cell.length_a 79.432 _cell.length_b 79.432 _cell.length_c 108.597 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O3' _chem_comp.formula_weight 354.403 _chem_comp.id XCF _chem_comp.mon_nstd_flag . _chem_comp.name 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C3 XCF sing 443 n n C3 N5 XCF doub 444 n y C3 N2 XCF sing 445 n y N5 C6 XCF sing 446 n y N2 C1 XCF doub 447 n y C1 C8 XCF sing 448 n y C8 C6 XCF doub 449 n y C8 C9 XCF sing 450 n n C6 N7 XCF sing 451 n n C9 C10 XCF sing 452 n n C10 C11 XCF doub 453 n y C10 C21 XCF sing 454 n y C11 C27 XCF sing 455 n n C11 C12 XCF sing 456 n y C27 C28 XCF doub 457 n n C28 C14 XCF sing 458 n n C14 C24 XCF sing 459 n n C14 O13 XCF sing 460 n n C24 C25 XCF sing 461 n n C24 C26 XCF sing 462 n n C25 C26 XCF sing 463 n n O13 C12 XCF sing 464 n n C12 C15 XCF doub 465 n y C15 O16 XCF sing 466 n n C15 C18 XCF sing 467 n y O16 C17 XCF sing 468 n n C18 C21 XCF doub 469 n y C18 O19 XCF sing 470 n n O19 C20 XCF sing 471 n n N4 HN4 XCF sing 472 n n N4 HN4A XCF sing 473 n n C1 H1 XCF sing 474 n n N7 HN7 XCF sing 475 n n N7 HN7A XCF sing 476 n n C9 H9 XCF sing 477 n n C9 H9A XCF sing 478 n n C27 H27 XCF sing 479 n n C28 H28 XCF sing 480 n n C14 H14 XCF sing 481 n n C24 H24 XCF sing 482 n n C25 H25 XCF sing 483 n n C25 H25A XCF sing 484 n n C26 H26 XCF sing 485 n n C26 H26A XCF sing 486 n n C17 H17 XCF sing 487 n n C17 H17A XCF sing 488 n n C17 H17B XCF sing 489 n n C21 H21 XCF sing 490 n n C20 H20 XCF sing 491 n n C20 H20A XCF sing 492 n n C20 H20B XCF sing 493 n n # _atom_sites.entry_id 3FY9 _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 301 301 NAP NAP . C 3 XCF X 1 300 300 XCF XCP . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 163 HOH HOH . D 4 HOH X 6 164 164 HOH HOH . D 4 HOH X 7 165 165 HOH HOH . D 4 HOH X 8 166 166 HOH HOH . D 4 HOH X 9 167 167 HOH HOH . D 4 HOH X 10 168 168 HOH HOH . D 4 HOH X 11 169 169 HOH HOH . D 4 HOH X 12 170 170 HOH HOH . D 4 HOH X 13 171 171 HOH HOH . D 4 HOH X 14 172 3 HOH HOH . D 4 HOH X 15 173 4 HOH HOH . D 4 HOH X 16 174 5 HOH HOH . D 4 HOH X 17 175 6 HOH HOH . D 4 HOH X 18 176 7 HOH HOH . D 4 HOH X 19 177 8 HOH HOH . D 4 HOH X 20 178 9 HOH HOH . D 4 HOH X 21 179 10 HOH HOH . D 4 HOH X 22 180 11 HOH HOH . D 4 HOH X 23 181 13 HOH HOH . D 4 HOH X 24 182 14 HOH HOH . D 4 HOH X 25 183 16 HOH HOH . D 4 HOH X 26 184 17 HOH HOH . D 4 HOH X 27 185 18 HOH HOH . D 4 HOH X 28 186 19 HOH HOH . D 4 HOH X 29 187 20 HOH HOH . D 4 HOH X 30 188 21 HOH HOH . D 4 HOH X 31 189 22 HOH HOH . D 4 HOH X 32 190 23 HOH HOH . D 4 HOH X 33 191 24 HOH HOH . D 4 HOH X 34 192 25 HOH HOH . D 4 HOH X 35 193 26 HOH HOH . D 4 HOH X 36 194 27 HOH HOH . D 4 HOH X 37 195 28 HOH HOH . D 4 HOH X 38 196 29 HOH HOH . D 4 HOH X 39 197 31 HOH HOH . D 4 HOH X 40 198 32 HOH HOH . D 4 HOH X 41 199 33 HOH HOH . D 4 HOH X 42 200 34 HOH HOH . D 4 HOH X 43 201 35 HOH HOH . D 4 HOH X 44 202 36 HOH HOH . D 4 HOH X 45 203 37 HOH HOH . D 4 HOH X 46 204 38 HOH HOH . D 4 HOH X 47 205 39 HOH HOH . D 4 HOH X 48 206 40 HOH HOH . D 4 HOH X 49 207 41 HOH HOH . D 4 HOH X 50 208 42 HOH HOH . D 4 HOH X 51 209 43 HOH HOH . D 4 HOH X 52 210 44 HOH HOH . D 4 HOH X 53 211 45 HOH HOH . D 4 HOH X 54 212 46 HOH HOH . D 4 HOH X 55 213 47 HOH HOH . D 4 HOH X 56 214 48 HOH HOH . D 4 HOH X 57 215 49 HOH HOH . D 4 HOH X 58 216 50 HOH HOH . D 4 HOH X 59 217 52 HOH HOH . D 4 HOH X 60 218 53 HOH HOH . D 4 HOH X 61 219 54 HOH HOH . D 4 HOH X 62 220 55 HOH HOH . D 4 HOH X 63 221 56 HOH HOH . D 4 HOH X 64 222 57 HOH HOH . D 4 HOH X 65 223 58 HOH HOH . D 4 HOH X 66 224 60 HOH HOH . D 4 HOH X 67 225 62 HOH HOH . D 4 HOH X 68 226 63 HOH HOH . D 4 HOH X 69 227 64 HOH HOH . D 4 HOH X 70 228 65 HOH HOH . D 4 HOH X 71 229 66 HOH HOH . D 4 HOH X 72 230 68 HOH HOH . D 4 HOH X 73 231 69 HOH HOH . D 4 HOH X 74 232 70 HOH HOH . D 4 HOH X 75 233 71 HOH HOH . D 4 HOH X 76 234 72 HOH HOH . D 4 HOH X 77 235 73 HOH HOH . D 4 HOH X 78 236 74 HOH HOH . D 4 HOH X 79 237 75 HOH HOH . D 4 HOH X 80 238 76 HOH HOH . D 4 HOH X 81 239 77 HOH HOH . D 4 HOH X 82 240 78 HOH HOH . D 4 HOH X 83 241 79 HOH HOH . D 4 HOH X 84 242 80 HOH HOH . D 4 HOH X 85 243 81 HOH HOH . D 4 HOH X 86 244 82 HOH HOH . D 4 HOH X 87 245 83 HOH HOH . D 4 HOH X 88 246 84 HOH HOH . D 4 HOH X 89 247 85 HOH HOH . D 4 HOH X 90 248 86 HOH HOH . D 4 HOH X 91 249 87 HOH HOH . D 4 HOH X 92 250 88 HOH HOH . D 4 HOH X 93 251 89 HOH HOH . D 4 HOH X 94 252 90 HOH HOH . D 4 HOH X 95 253 91 HOH HOH . D 4 HOH X 96 254 92 HOH HOH . D 4 HOH X 97 255 93 HOH HOH . D 4 HOH X 98 256 94 HOH HOH . D 4 HOH X 99 257 95 HOH HOH . D 4 HOH X 100 258 96 HOH HOH . D 4 HOH X 101 259 97 HOH HOH . D 4 HOH X 102 260 98 HOH HOH . D 4 HOH X 103 261 99 HOH HOH . D 4 HOH X 104 262 100 HOH HOH . D 4 HOH X 105 263 102 HOH HOH . D 4 HOH X 106 264 103 HOH HOH . D 4 HOH X 107 265 104 HOH HOH . D 4 HOH X 108 266 105 HOH HOH . D 4 HOH X 109 267 106 HOH HOH . D 4 HOH X 110 268 107 HOH HOH . D 4 HOH X 111 269 108 HOH HOH . D 4 HOH X 112 270 110 HOH HOH . D 4 HOH X 113 271 111 HOH HOH . D 4 HOH X 114 272 112 HOH HOH . D 4 HOH X 115 273 113 HOH HOH . D 4 HOH X 116 274 114 HOH HOH . D 4 HOH X 117 275 116 HOH HOH . D 4 HOH X 118 276 117 HOH HOH . D 4 HOH X 119 277 118 HOH HOH . D 4 HOH X 120 278 119 HOH HOH . D 4 HOH X 121 279 121 HOH HOH . D 4 HOH X 122 280 122 HOH HOH . D 4 HOH X 123 281 123 HOH HOH . D 4 HOH X 124 282 124 HOH HOH . D 4 HOH X 125 283 125 HOH HOH . D 4 HOH X 126 284 126 HOH HOH . D 4 HOH X 127 285 127 HOH HOH . D 4 HOH X 128 286 128 HOH HOH . D 4 HOH X 129 287 129 HOH HOH . D 4 HOH X 130 288 130 HOH HOH . D 4 HOH X 131 289 131 HOH HOH . D 4 HOH X 132 290 132 HOH HOH . D 4 HOH X 133 291 133 HOH HOH . D 4 HOH X 134 292 134 HOH HOH . D 4 HOH X 135 293 135 HOH HOH . D 4 HOH X 136 294 136 HOH HOH . D 4 HOH X 137 295 137 HOH HOH . D 4 HOH X 138 296 138 HOH HOH . D 4 HOH X 139 297 139 HOH HOH . D 4 HOH X 140 298 140 HOH HOH . D 4 HOH X 141 299 141 HOH HOH . D 4 HOH X 142 302 142 HOH HOH . D 4 HOH X 143 303 143 HOH HOH . D 4 HOH X 144 304 144 HOH HOH . D 4 HOH X 145 305 145 HOH HOH . D 4 HOH X 146 306 146 HOH HOH . D 4 HOH X 147 307 147 HOH HOH . D 4 HOH X 148 308 148 HOH HOH . D 4 HOH X 149 309 149 HOH HOH . D 4 HOH X 150 310 150 HOH HOH . D 4 HOH X 151 311 151 HOH HOH . D 4 HOH X 152 312 152 HOH HOH . D 4 HOH X 153 313 153 HOH HOH . D 4 HOH X 154 314 154 HOH HOH . D 4 HOH X 155 315 155 HOH HOH . D 4 HOH X 156 316 156 HOH HOH . D 4 HOH X 157 317 157 HOH HOH . D 4 HOH X 158 318 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 XCF . . . C 3 26.558 7.277 41.403 1 37.83 ? N4 XCF 300 X 1 HETATM 2 C C3 XCF . . . C 3 27.221 8.459 41.434 1 37.91 ? C3 XCF 300 X 1 HETATM 3 N N5 XCF . . . C 3 26.834 9.421 40.586 1 37.7 ? N5 XCF 300 X 1 HETATM 4 N N2 XCF . . . C 3 28.251 8.647 42.285 1 37.82 ? N2 XCF 300 X 1 HETATM 5 C C1 XCF . . . C 3 28.906 9.819 42.295 1 37.65 ? C1 XCF 300 X 1 HETATM 6 C C8 XCF . . . C 3 28.512 10.835 41.423 1 37.92 ? C8 XCF 300 X 1 HETATM 7 C C6 XCF . . . C 3 27.449 10.604 40.567 1 37.56 ? C6 XCF 300 X 1 HETATM 8 N N7 XCF . . . C 3 27.024 11.56 39.704 1 37.69 ? N7 XCF 300 X 1 HETATM 9 C C9 XCF . . . C 3 29.2 12.195 41.363 1 38.08 ? C9 XCF 300 X 1 HETATM 10 C C10 XCF . . . C 3 30.168 12.523 42.49 1 38.47 ? C10 XCF 300 X 1 HETATM 11 C C11 XCF . . . C 3 31.445 11.986 42.484 1 38.2 ? C11 XCF 300 X 1 HETATM 12 C C27 XCF . . . C 3 31.91 11.131 41.371 1 37.98 ? C27 XCF 300 X 1 HETATM 13 C C28 XCF . . . C 3 33.207 10.903 41.233 1 38.29 ? C28 XCF 300 X 1 HETATM 14 C C14 XCF . . . C 3 34.201 11.523 42.196 1 38.81 ? C14 XCF 300 X 1 HETATM 15 C C24 XCF . . . C 3 35.515 10.746 42.261 1 39.3 ? C24 XCF 300 X 1 HETATM 16 C C25 XCF . . . C 3 36.63 11.515 41.544 1 39.7 ? C25 XCF 300 X 1 HETATM 17 C C26 XCF . . . C 3 36.706 11.306 43.053 1 39.3 ? C26 XCF 300 X 1 HETATM 18 O O13 XCF . . . C 3 33.593 11.755 43.48 1 38.57 ? O13 XCF 300 X 1 HETATM 19 C C12 XCF . . . C 3 32.332 12.302 43.497 1 38.35 ? C12 XCF 300 X 1 HETATM 20 C C15 XCF . . . C 3 31.966 13.145 44.525 1 38.46 ? C15 XCF 300 X 1 HETATM 21 O O16 XCF . . . C 3 32.9 13.426 45.503 1 38.7 ? O16 XCF 300 X 1 HETATM 22 C C17 XCF . . . C 3 34.107 14.11 45.151 1 38.89 ? C17 XCF 300 X 1 HETATM 23 C C18 XCF . . . C 3 30.69 13.69 44.554 1 38.12 ? C18 XCF 300 X 1 HETATM 24 C C21 XCF . . . C 3 29.794 13.383 43.528 1 38.3 ? C21 XCF 300 X 1 HETATM 25 O O19 XCF . . . C 3 30.32 14.536 45.577 1 37.8 ? O19 XCF 300 X 1 HETATM 26 C C20 XCF . . . C 3 28.982 15.029 45.637 1 37.25 ? C20 XCF 300 X 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 26 #