data_3FY9 # _model_server_result.job_id 9R9pp29ny8HGxPFbDo6HAg _model_server_result.datetime_utc '2024-12-22 06:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3FY9 # _exptl.entry_id 3FY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FY9 _cell.length_a 79.432 _cell.length_b 79.432 _cell.length_c 108.597 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 3FY9 _atom_sites.fract_transf_matrix[1][1] 0.012568 _atom_sites.fract_transf_matrix[1][2] 0.007256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 301 301 NAP NAP . C 3 XCF X 1 300 300 XCF XCP . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 160 HOH HOH . D 4 HOH X 3 161 161 HOH HOH . D 4 HOH X 4 162 162 HOH HOH . D 4 HOH X 5 163 163 HOH HOH . D 4 HOH X 6 164 164 HOH HOH . D 4 HOH X 7 165 165 HOH HOH . D 4 HOH X 8 166 166 HOH HOH . D 4 HOH X 9 167 167 HOH HOH . D 4 HOH X 10 168 168 HOH HOH . D 4 HOH X 11 169 169 HOH HOH . D 4 HOH X 12 170 170 HOH HOH . D 4 HOH X 13 171 171 HOH HOH . D 4 HOH X 14 172 3 HOH HOH . D 4 HOH X 15 173 4 HOH HOH . D 4 HOH X 16 174 5 HOH HOH . D 4 HOH X 17 175 6 HOH HOH . D 4 HOH X 18 176 7 HOH HOH . D 4 HOH X 19 177 8 HOH HOH . D 4 HOH X 20 178 9 HOH HOH . D 4 HOH X 21 179 10 HOH HOH . D 4 HOH X 22 180 11 HOH HOH . D 4 HOH X 23 181 13 HOH HOH . D 4 HOH X 24 182 14 HOH HOH . D 4 HOH X 25 183 16 HOH HOH . D 4 HOH X 26 184 17 HOH HOH . D 4 HOH X 27 185 18 HOH HOH . D 4 HOH X 28 186 19 HOH HOH . D 4 HOH X 29 187 20 HOH HOH . D 4 HOH X 30 188 21 HOH HOH . D 4 HOH X 31 189 22 HOH HOH . D 4 HOH X 32 190 23 HOH HOH . D 4 HOH X 33 191 24 HOH HOH . D 4 HOH X 34 192 25 HOH HOH . D 4 HOH X 35 193 26 HOH HOH . D 4 HOH X 36 194 27 HOH HOH . D 4 HOH X 37 195 28 HOH HOH . D 4 HOH X 38 196 29 HOH HOH . D 4 HOH X 39 197 31 HOH HOH . D 4 HOH X 40 198 32 HOH HOH . D 4 HOH X 41 199 33 HOH HOH . D 4 HOH X 42 200 34 HOH HOH . D 4 HOH X 43 201 35 HOH HOH . D 4 HOH X 44 202 36 HOH HOH . D 4 HOH X 45 203 37 HOH HOH . D 4 HOH X 46 204 38 HOH HOH . D 4 HOH X 47 205 39 HOH HOH . D 4 HOH X 48 206 40 HOH HOH . D 4 HOH X 49 207 41 HOH HOH . D 4 HOH X 50 208 42 HOH HOH . D 4 HOH X 51 209 43 HOH HOH . D 4 HOH X 52 210 44 HOH HOH . D 4 HOH X 53 211 45 HOH HOH . D 4 HOH X 54 212 46 HOH HOH . D 4 HOH X 55 213 47 HOH HOH . D 4 HOH X 56 214 48 HOH HOH . D 4 HOH X 57 215 49 HOH HOH . D 4 HOH X 58 216 50 HOH HOH . D 4 HOH X 59 217 52 HOH HOH . D 4 HOH X 60 218 53 HOH HOH . D 4 HOH X 61 219 54 HOH HOH . D 4 HOH X 62 220 55 HOH HOH . D 4 HOH X 63 221 56 HOH HOH . D 4 HOH X 64 222 57 HOH HOH . D 4 HOH X 65 223 58 HOH HOH . D 4 HOH X 66 224 60 HOH HOH . D 4 HOH X 67 225 62 HOH HOH . D 4 HOH X 68 226 63 HOH HOH . D 4 HOH X 69 227 64 HOH HOH . D 4 HOH X 70 228 65 HOH HOH . D 4 HOH X 71 229 66 HOH HOH . D 4 HOH X 72 230 68 HOH HOH . D 4 HOH X 73 231 69 HOH HOH . D 4 HOH X 74 232 70 HOH HOH . D 4 HOH X 75 233 71 HOH HOH . D 4 HOH X 76 234 72 HOH HOH . D 4 HOH X 77 235 73 HOH HOH . D 4 HOH X 78 236 74 HOH HOH . D 4 HOH X 79 237 75 HOH HOH . D 4 HOH X 80 238 76 HOH HOH . D 4 HOH X 81 239 77 HOH HOH . D 4 HOH X 82 240 78 HOH HOH . D 4 HOH X 83 241 79 HOH HOH . D 4 HOH X 84 242 80 HOH HOH . D 4 HOH X 85 243 81 HOH HOH . D 4 HOH X 86 244 82 HOH HOH . D 4 HOH X 87 245 83 HOH HOH . D 4 HOH X 88 246 84 HOH HOH . D 4 HOH X 89 247 85 HOH HOH . D 4 HOH X 90 248 86 HOH HOH . D 4 HOH X 91 249 87 HOH HOH . D 4 HOH X 92 250 88 HOH HOH . D 4 HOH X 93 251 89 HOH HOH . D 4 HOH X 94 252 90 HOH HOH . D 4 HOH X 95 253 91 HOH HOH . D 4 HOH X 96 254 92 HOH HOH . D 4 HOH X 97 255 93 HOH HOH . D 4 HOH X 98 256 94 HOH HOH . D 4 HOH X 99 257 95 HOH HOH . D 4 HOH X 100 258 96 HOH HOH . D 4 HOH X 101 259 97 HOH HOH . D 4 HOH X 102 260 98 HOH HOH . D 4 HOH X 103 261 99 HOH HOH . D 4 HOH X 104 262 100 HOH HOH . D 4 HOH X 105 263 102 HOH HOH . D 4 HOH X 106 264 103 HOH HOH . D 4 HOH X 107 265 104 HOH HOH . D 4 HOH X 108 266 105 HOH HOH . D 4 HOH X 109 267 106 HOH HOH . D 4 HOH X 110 268 107 HOH HOH . D 4 HOH X 111 269 108 HOH HOH . D 4 HOH X 112 270 110 HOH HOH . D 4 HOH X 113 271 111 HOH HOH . D 4 HOH X 114 272 112 HOH HOH . D 4 HOH X 115 273 113 HOH HOH . D 4 HOH X 116 274 114 HOH HOH . D 4 HOH X 117 275 116 HOH HOH . D 4 HOH X 118 276 117 HOH HOH . D 4 HOH X 119 277 118 HOH HOH . D 4 HOH X 120 278 119 HOH HOH . D 4 HOH X 121 279 121 HOH HOH . D 4 HOH X 122 280 122 HOH HOH . D 4 HOH X 123 281 123 HOH HOH . D 4 HOH X 124 282 124 HOH HOH . D 4 HOH X 125 283 125 HOH HOH . D 4 HOH X 126 284 126 HOH HOH . D 4 HOH X 127 285 127 HOH HOH . D 4 HOH X 128 286 128 HOH HOH . D 4 HOH X 129 287 129 HOH HOH . D 4 HOH X 130 288 130 HOH HOH . D 4 HOH X 131 289 131 HOH HOH . D 4 HOH X 132 290 132 HOH HOH . D 4 HOH X 133 291 133 HOH HOH . D 4 HOH X 134 292 134 HOH HOH . D 4 HOH X 135 293 135 HOH HOH . D 4 HOH X 136 294 136 HOH HOH . D 4 HOH X 137 295 137 HOH HOH . D 4 HOH X 138 296 138 HOH HOH . D 4 HOH X 139 297 139 HOH HOH . D 4 HOH X 140 298 140 HOH HOH . D 4 HOH X 141 299 141 HOH HOH . D 4 HOH X 142 302 142 HOH HOH . D 4 HOH X 143 303 143 HOH HOH . D 4 HOH X 144 304 144 HOH HOH . D 4 HOH X 145 305 145 HOH HOH . D 4 HOH X 146 306 146 HOH HOH . D 4 HOH X 147 307 147 HOH HOH . D 4 HOH X 148 308 148 HOH HOH . D 4 HOH X 149 309 149 HOH HOH . D 4 HOH X 150 310 150 HOH HOH . D 4 HOH X 151 311 151 HOH HOH . D 4 HOH X 152 312 152 HOH HOH . D 4 HOH X 153 313 153 HOH HOH . D 4 HOH X 154 314 154 HOH HOH . D 4 HOH X 155 315 155 HOH HOH . D 4 HOH X 156 316 156 HOH HOH . D 4 HOH X 157 317 157 HOH HOH . D 4 HOH X 158 318 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 24.099 21.518 42.747 1 37.12 ? PA NAP 301 X 1 HETATM 2 O O1A NAP . . . B 2 25.328 20.718 42.575 1 36.29 ? O1A NAP 301 X 1 HETATM 3 O O2A NAP . . . B 2 22.947 21.056 41.96 1 36.38 ? O2A NAP 301 X 1 HETATM 4 O O5B NAP . . . B 2 24.491 23.015 42.33 1 37.88 ? O5B NAP 301 X 1 HETATM 5 C C5B NAP . . . B 2 23.474 23.987 42.294 1 39.11 ? C5B NAP 301 X 1 HETATM 6 C C4B NAP . . . B 2 24.037 25.239 41.659 1 39.44 ? C4B NAP 301 X 1 HETATM 7 O O4B NAP . . . B 2 24.068 25.047 40.265 1 40.41 ? O4B NAP 301 X 1 HETATM 8 C C3B NAP . . . B 2 23.196 26.489 41.864 1 40.11 ? C3B NAP 301 X 1 HETATM 9 O O3B NAP . . . B 2 23.396 27.111 43.12 1 40.13 ? O3B NAP 301 X 1 HETATM 10 C C2B NAP . . . B 2 23.668 27.308 40.678 1 40.31 ? C2B NAP 301 X 1 HETATM 11 O O2B NAP . . . B 2 24.961 27.802 40.912 1 38.7 ? O2B NAP 301 X 1 HETATM 12 C C1B NAP . . . B 2 23.779 26.261 39.596 1 41.6 ? C1B NAP 301 X 1 HETATM 13 N N9A NAP . . . B 2 22.52 26.127 38.856 1 42.14 ? N9A NAP 301 X 1 HETATM 14 C C8A NAP . . . B 2 21.591 25.132 39.003 1 42.52 ? C8A NAP 301 X 1 HETATM 15 N N7A NAP . . . B 2 20.573 25.345 38.139 1 42.43 ? N7A NAP 301 X 1 HETATM 16 C C5A NAP . . . B 2 20.853 26.468 37.435 1 43.02 ? C5A NAP 301 X 1 HETATM 17 C C6A NAP . . . B 2 20.166 27.137 36.437 1 42.61 ? C6A NAP 301 X 1 HETATM 18 N N6A NAP . . . B 2 18.993 26.668 36.007 1 42.29 ? N6A NAP 301 X 1 HETATM 19 N N1A NAP . . . B 2 20.707 28.293 35.908 1 42.46 ? N1A NAP 301 X 1 HETATM 20 C C2A NAP . . . B 2 21.917 28.771 36.354 1 42.24 ? C2A NAP 301 X 1 HETATM 21 N N3A NAP . . . B 2 22.598 28.105 37.339 1 42.55 ? N3A NAP 301 X 1 HETATM 22 C C4A NAP . . . B 2 22.072 26.974 37.877 1 42.96 ? C4A NAP 301 X 1 HETATM 23 O O3 NAP . . . B 2 23.714 21.693 44.31 1 36.51 ? O3 NAP 301 X 1 HETATM 24 P PN NAP . . . B 2 22.655 21.043 45.342 1 35.36 ? PN NAP 301 X 1 HETATM 25 O O1N NAP . . . B 2 21.301 21.103 44.757 1 35.64 ? O1N NAP 301 X 1 HETATM 26 O O2N NAP . . . B 2 22.909 21.645 46.666 1 34.96 ? O2N NAP 301 X 1 HETATM 27 O O5D NAP . . . B 2 23.173 19.531 45.353 1 34.56 ? O5D NAP 301 X 1 HETATM 28 C C5D NAP . . . B 2 24.418 19.236 45.928 1 34.24 ? C5D NAP 301 X 1 HETATM 29 C C4D NAP . . . B 2 24.261 17.942 46.71 1 33.64 ? C4D NAP 301 X 1 HETATM 30 O O4D NAP . . . B 2 24.172 16.876 45.786 1 33.26 ? O4D NAP 301 X 1 HETATM 31 C C3D NAP . . . B 2 25.451 17.662 47.628 1 32.8 ? C3D NAP 301 X 1 HETATM 32 O O3D NAP . . . B 2 24.989 17.156 48.858 1 31.42 ? O3D NAP 301 X 1 HETATM 33 C C2D NAP . . . B 2 26.23 16.596 46.912 1 32.67 ? C2D NAP 301 X 1 HETATM 34 O O2D NAP . . . B 2 26.942 15.82 47.84 1 32.27 ? O2D NAP 301 X 1 HETATM 35 C C1D NAP . . . B 2 25.1 15.866 46.179 1 32.97 ? C1D NAP 301 X 1 HETATM 36 N N1N NAP . . . B 2 25.476 15.063 44.996 1 32.46 ? N1N NAP 301 X 1 HETATM 37 C C2N NAP . . . B 2 25.1 13.749 44.977 1 32.81 ? C2N NAP 301 X 1 HETATM 38 C C3N NAP . . . B 2 25.404 12.937 43.885 1 33.06 ? C3N NAP 301 X 1 HETATM 39 C C7N NAP . . . B 2 25.041 11.542 43.973 1 33.09 ? C7N NAP 301 X 1 HETATM 40 O O7N NAP . . . B 2 25.039 10.748 42.926 1 33.21 ? O7N NAP 301 X 1 HETATM 41 N N7N NAP . . . B 2 24.677 11.03 45.152 1 33.82 ? N7N NAP 301 X 1 HETATM 42 C C4N NAP . . . B 2 26.092 13.487 42.806 1 32.68 ? C4N NAP 301 X 1 HETATM 43 C C5N NAP . . . B 2 26.473 14.826 42.847 1 32.58 ? C5N NAP 301 X 1 HETATM 44 C C6N NAP . . . B 2 26.153 15.607 43.95 1 32.37 ? C6N NAP 301 X 1 HETATM 45 P P2B NAP . . . B 2 25.192 29.343 41.295 1 37.21 ? P2B NAP 301 X 1 HETATM 46 O O1X NAP . . . B 2 24.389 30.199 40.365 1 37.18 ? O1X NAP 301 X 1 HETATM 47 O O2X NAP . . . B 2 26.677 29.612 41.191 1 38.48 ? O2X NAP 301 X 1 HETATM 48 O O3X NAP . . . B 2 24.729 29.618 42.694 1 38.42 ? O3X NAP 301 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #