data_3FYB
#
_model_server_result.job_id            jcV4HZ60ky7SWbJnRP1Z5Q 
_model_server_result.datetime_utc      '2025-06-16 09:10:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":106}' 
#
_entry.id    3FYB 
#
_exptl.entry_id    3FYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FYB 
_cell.length_a            40.501 
_cell.length_b            69.536 
_cell.length_c            81.921 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 2 A MSE 1 1_555 A N ALA 3 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 A C GLU 12 A GLU 11 1_555 A N MSE 13 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 13 A MSE 12 1_555 A N GLU 14 A GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C LEU 36 A LEU 35 1_555 A N MSE 37 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 A C MSE 37 A MSE 36 1_555 A N ILE 38 A ILE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C LEU 51 A LEU 50 1_555 A N MSE 52 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C MSE 52 A MSE 51 1_555 A N GLU 53 A GLU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 A C GLY 73 A GLY 72 1_555 A N MSE 74 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 A C MSE 74 A MSE 73 1_555 A N PRO 75 A PRO 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale11 B C GLY 1 B GLY 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 B C MSE 2 B MSE 1 1_555 B N ALA 3 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale13 B C GLU 12 B GLU 11 1_555 B N MSE 13 B MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale14 B C MSE 13 B MSE 12 1_555 B N GLU 14 B GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C LEU 36 B LEU 35 1_555 B N MSE 37 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 B C MSE 37 B MSE 36 1_555 B N ILE 38 B ILE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 B C LEU 51 B LEU 50 1_555 B N MSE 52 B MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale18 B C MSE 52 B MSE 51 1_555 B N GLU 53 B GLU 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale19 B C GLY 73 B GLY 72 1_555 B N MSE 74 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 B C MSE 74 B MSE 73 1_555 B N PRO 75 B PRO 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 246 n n 
C1 C2 PEG sing 247 n n 
C1 H11 PEG sing 248 n n 
C1 H12 PEG sing 249 n n 
O1 HO1 PEG sing 250 n n 
C2 O2 PEG sing 251 n n 
C2 H21 PEG sing 252 n n 
C2 H22 PEG sing 253 n n 
O2 C3 PEG sing 254 n n 
C3 C4 PEG sing 255 n n 
C3 H31 PEG sing 256 n n 
C3 H32 PEG sing 257 n n 
C4 O4 PEG sing 258 n n 
C4 H41 PEG sing 259 n n 
C4 H42 PEG sing 260 n n 
O4 HO4 PEG sing 261 n n 
#
_atom_sites.entry_id                     3FYB 
_atom_sites.fract_transf_matrix[1][1]    0.024691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 104 1 CL CL . 
D 2 CL A 1 105 2 CL CL . 
E 3 CA A 1 106 1 CA CA . 
F 4 PEG A 1 107 2 PEG PEG . 
G 5 EDO A 1 108 1 EDO EDO . 
H 2 CL B 1 104 3 CL CL . 
I 3 CA B 1 105 2 CA CA . 
J 4 PEG B 1 106 1 PEG PEG . 
K 6 HOH A 1 109 109 HOH HOH . 
K 6 HOH A 2 110 1 HOH HOH . 
K 6 HOH A 3 112 112 HOH HOH . 
K 6 HOH A 4 113 113 HOH HOH . 
K 6 HOH A 5 114 114 HOH HOH . 
K 6 HOH A 6 116 6 HOH HOH . 
K 6 HOH A 7 117 7 HOH HOH . 
K 6 HOH A 8 118 118 HOH HOH . 
K 6 HOH A 9 119 119 HOH HOH . 
K 6 HOH A 10 120 120 HOH HOH . 
K 6 HOH A 11 123 11 HOH HOH . 
K 6 HOH A 12 125 125 HOH HOH . 
K 6 HOH A 13 127 14 HOH HOH . 
K 6 HOH A 14 128 128 HOH HOH . 
K 6 HOH A 15 130 130 HOH HOH . 
K 6 HOH A 16 131 131 HOH HOH . 
K 6 HOH A 17 133 133 HOH HOH . 
K 6 HOH A 18 134 18 HOH HOH . 
K 6 HOH A 19 135 19 HOH HOH . 
K 6 HOH A 20 136 136 HOH HOH . 
K 6 HOH A 21 137 20 HOH HOH . 
K 6 HOH A 22 138 21 HOH HOH . 
K 6 HOH A 23 139 139 HOH HOH . 
K 6 HOH A 24 140 140 HOH HOH . 
K 6 HOH A 25 141 141 HOH HOH . 
K 6 HOH A 26 142 142 HOH HOH . 
K 6 HOH A 27 143 143 HOH HOH . 
K 6 HOH A 28 146 146 HOH HOH . 
K 6 HOH A 29 148 25 HOH HOH . 
K 6 HOH A 30 150 27 HOH HOH . 
K 6 HOH A 31 151 28 HOH HOH . 
K 6 HOH A 32 152 152 HOH HOH . 
K 6 HOH A 33 153 153 HOH HOH . 
K 6 HOH A 34 154 30 HOH HOH . 
K 6 HOH A 35 158 35 HOH HOH . 
K 6 HOH A 36 159 159 HOH HOH . 
K 6 HOH A 37 161 161 HOH HOH . 
K 6 HOH A 38 162 38 HOH HOH . 
K 6 HOH A 39 163 163 HOH HOH . 
K 6 HOH A 40 164 39 HOH HOH . 
K 6 HOH A 41 165 40 HOH HOH . 
K 6 HOH A 42 166 41 HOH HOH . 
K 6 HOH A 43 167 42 HOH HOH . 
K 6 HOH A 44 168 43 HOH HOH . 
K 6 HOH A 45 169 44 HOH HOH . 
K 6 HOH A 46 170 45 HOH HOH . 
K 6 HOH A 47 171 46 HOH HOH . 
K 6 HOH A 48 172 172 HOH HOH . 
K 6 HOH A 49 173 173 HOH HOH . 
K 6 HOH A 50 174 47 HOH HOH . 
K 6 HOH A 51 175 49 HOH HOH . 
K 6 HOH A 52 176 50 HOH HOH . 
K 6 HOH A 53 179 53 HOH HOH . 
K 6 HOH A 54 180 54 HOH HOH . 
K 6 HOH A 55 181 55 HOH HOH . 
K 6 HOH A 56 183 183 HOH HOH . 
K 6 HOH A 57 185 58 HOH HOH . 
K 6 HOH A 58 187 61 HOH HOH . 
K 6 HOH A 59 188 62 HOH HOH . 
K 6 HOH A 60 189 189 HOH HOH . 
K 6 HOH A 61 190 190 HOH HOH . 
K 6 HOH A 62 192 64 HOH HOH . 
K 6 HOH A 63 194 66 HOH HOH . 
K 6 HOH A 64 195 67 HOH HOH . 
K 6 HOH A 65 198 198 HOH HOH . 
K 6 HOH A 66 199 70 HOH HOH . 
K 6 HOH A 67 200 200 HOH HOH . 
K 6 HOH A 68 204 204 HOH HOH . 
K 6 HOH A 69 205 205 HOH HOH . 
K 6 HOH A 70 208 78 HOH HOH . 
K 6 HOH A 71 210 210 HOH HOH . 
K 6 HOH A 72 212 212 HOH HOH . 
K 6 HOH A 73 213 83 HOH HOH . 
K 6 HOH A 74 214 87 HOH HOH . 
K 6 HOH A 75 215 88 HOH HOH . 
K 6 HOH A 76 217 90 HOH HOH . 
K 6 HOH A 77 219 219 HOH HOH . 
K 6 HOH A 78 220 220 HOH HOH . 
K 6 HOH A 79 221 221 HOH HOH . 
K 6 HOH A 80 222 222 HOH HOH . 
K 6 HOH A 81 223 223 HOH HOH . 
K 6 HOH A 82 225 94 HOH HOH . 
K 6 HOH A 83 227 96 HOH HOH . 
K 6 HOH A 84 228 228 HOH HOH . 
K 6 HOH A 85 229 229 HOH HOH . 
K 6 HOH A 86 230 97 HOH HOH . 
K 6 HOH A 87 231 98 HOH HOH . 
K 6 HOH A 88 232 99 HOH HOH . 
K 6 HOH A 89 233 100 HOH HOH . 
K 6 HOH A 90 234 234 HOH HOH . 
K 6 HOH A 91 235 235 HOH HOH . 
K 6 HOH A 92 236 104 HOH HOH . 
K 6 HOH A 93 237 105 HOH HOH . 
K 6 HOH A 94 238 238 HOH HOH . 
K 6 HOH A 95 239 106 HOH HOH . 
K 6 HOH A 96 240 240 HOH HOH . 
K 6 HOH A 97 241 241 HOH HOH . 
K 6 HOH A 98 242 107 HOH HOH . 
K 6 HOH A 99 244 244 HOH HOH . 
K 6 HOH A 100 247 247 HOH HOH . 
K 6 HOH A 101 251 251 HOH HOH . 
K 6 HOH A 102 252 252 HOH HOH . 
K 6 HOH A 103 254 254 HOH HOH . 
K 6 HOH A 104 256 256 HOH HOH . 
K 6 HOH A 105 258 258 HOH HOH . 
K 6 HOH A 106 260 260 HOH HOH . 
K 6 HOH A 107 264 264 HOH HOH . 
K 6 HOH A 108 266 266 HOH HOH . 
L 6 HOH B 1 110 110 HOH HOH . 
L 6 HOH B 2 111 2 HOH HOH . 
L 6 HOH B 3 112 121 HOH HOH . 
L 6 HOH B 4 113 122 HOH HOH . 
L 6 HOH B 5 114 124 HOH HOH . 
L 6 HOH B 6 115 5 HOH HOH . 
L 6 HOH B 7 116 116 HOH HOH . 
L 6 HOH B 8 117 117 HOH HOH . 
L 6 HOH B 9 118 126 HOH HOH . 
L 6 HOH B 10 119 129 HOH HOH . 
L 6 HOH B 11 120 132 HOH HOH . 
L 6 HOH B 12 121 8 HOH HOH . 
L 6 HOH B 13 122 10 HOH HOH . 
L 6 HOH B 14 123 123 HOH HOH . 
L 6 HOH B 15 124 12 HOH HOH . 
L 6 HOH B 16 125 149 HOH HOH . 
L 6 HOH B 17 126 13 HOH HOH . 
L 6 HOH B 18 127 160 HOH HOH . 
L 6 HOH B 19 128 182 HOH HOH . 
L 6 HOH B 20 129 15 HOH HOH . 
L 6 HOH B 21 130 196 HOH HOH . 
L 6 HOH B 22 131 201 HOH HOH . 
L 6 HOH B 23 132 17 HOH HOH . 
L 6 HOH B 24 133 202 HOH HOH . 
L 6 HOH B 25 134 134 HOH HOH . 
L 6 HOH B 26 135 203 HOH HOH . 
L 6 HOH B 27 136 206 HOH HOH . 
L 6 HOH B 28 137 137 HOH HOH . 
L 6 HOH B 29 138 138 HOH HOH . 
L 6 HOH B 30 139 207 HOH HOH . 
L 6 HOH B 31 140 216 HOH HOH . 
L 6 HOH B 32 141 224 HOH HOH . 
L 6 HOH B 33 144 22 HOH HOH . 
L 6 HOH B 34 145 23 HOH HOH . 
L 6 HOH B 35 147 24 HOH HOH . 
L 6 HOH B 36 148 148 HOH HOH . 
L 6 HOH B 37 149 26 HOH HOH . 
L 6 HOH B 38 150 150 HOH HOH . 
L 6 HOH B 39 155 31 HOH HOH . 
L 6 HOH B 40 156 32 HOH HOH . 
L 6 HOH B 41 157 33 HOH HOH . 
L 6 HOH B 42 160 36 HOH HOH . 
L 6 HOH B 43 165 165 HOH HOH . 
L 6 HOH B 44 177 51 HOH HOH . 
L 6 HOH B 45 178 52 HOH HOH . 
L 6 HOH B 46 180 180 HOH HOH . 
L 6 HOH B 47 182 56 HOH HOH . 
L 6 HOH B 48 184 57 HOH HOH . 
L 6 HOH B 49 186 59 HOH HOH . 
L 6 HOH B 50 191 63 HOH HOH . 
L 6 HOH B 51 193 65 HOH HOH . 
L 6 HOH B 52 196 68 HOH HOH . 
L 6 HOH B 53 197 69 HOH HOH . 
L 6 HOH B 54 201 71 HOH HOH . 
L 6 HOH B 55 202 72 HOH HOH . 
L 6 HOH B 56 203 75 HOH HOH . 
L 6 HOH B 57 206 76 HOH HOH . 
L 6 HOH B 58 207 77 HOH HOH . 
L 6 HOH B 59 209 79 HOH HOH . 
L 6 HOH B 60 210 81 HOH HOH . 
L 6 HOH B 61 211 82 HOH HOH . 
L 6 HOH B 62 214 214 HOH HOH . 
L 6 HOH B 63 216 89 HOH HOH . 
L 6 HOH B 64 218 92 HOH HOH . 
L 6 HOH B 65 224 93 HOH HOH . 
L 6 HOH B 66 226 95 HOH HOH . 
L 6 HOH B 67 231 231 HOH HOH . 
L 6 HOH B 68 232 232 HOH HOH . 
L 6 HOH B 69 233 233 HOH HOH . 
L 6 HOH B 70 236 236 HOH HOH . 
L 6 HOH B 71 239 239 HOH HOH . 
L 6 HOH B 72 246 246 HOH HOH . 
L 6 HOH B 73 249 249 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . J 4 17.08 44.876 4.343 1 35.95 ? C1 PEG 106 B 1 
HETATM 2 O O1 PEG . . . J 4 15.682 45.157 4.394 1 37.93 ? O1 PEG 106 B 1 
HETATM 3 C C2 PEG . . . J 4 17.275 43.379 4.458 1 30.29 ? C2 PEG 106 B 1 
HETATM 4 O O2 PEG . . . J 4 17.426 42.856 3.132 1 32.34 ? O2 PEG 106 B 1 
HETATM 5 C C3 PEG . . . J 4 16.618 41.701 2.965 1 30.46 ? C3 PEG 106 B 1 
HETATM 6 C C4 PEG . . . J 4 17.505 40.635 2.357 1 31.65 ? C4 PEG 106 B 1 
HETATM 7 O O4 PEG . . . J 4 17.217 39.331 2.838 1 28.22 ? O4 PEG 106 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           799 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#