data_3FYK
#
_model_server_result.job_id            JMUF3IWO2miK5u_5DZeRpg 
_model_server_result.datetime_utc      '2024-11-04 20:33:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":372}' 
#
_entry.id    3FYK 
#
_exptl.entry_id    3FYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.342 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-3-(aminomethyl)-9-methoxy-1,2,3,4-tetrahydro-5H-[1]benzothieno[3,2-e][1,4]diazepin-5-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FYK 
_cell.length_a            254.598 
_cell.length_b            254.598 
_cell.length_c            254.598 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 41 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1,2,3 
A,B 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 60_665 -y+3/2,-z+3/2,x 0 -1 0 0 0 -1 1 0 0 381.897 381.897 0 
3 'crystal symmetry operation' 78_566 z,-x+3/2,-y+3/2 0 0 1 -1 0 0 0 -1 0 0 381.897 381.897 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H15 N3 O2 S' 
_chem_comp.formula_weight    277.342 
_chem_comp.id                B98 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-3-(aminomethyl)-9-methoxy-1,2,3,4-tetrahydro-5H-[1]benzothieno[3,2-e][1,4]diazepin-5-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 B98 doub 70 n y 
C4 C3 B98 sing 71 n y 
C5 C6 B98 sing 72 n y 
C19 C18 B98 sing 73 n y 
C19 C3 B98 doub 74 n y 
C18 C17 B98 sing 75 n y 
C18 C6 B98 doub 76 n y 
C17 C8 B98 doub 77 n y 
C17 N16 B98 sing 78 n n 
C3 O2 B98 sing 79 n n 
C6 S7 B98 sing 80 n y 
C8 C9 B98 sing 81 n n 
C8 S7 B98 sing 82 n y 
C9 N11 B98 sing 83 n n 
C9 O10 B98 doub 84 n n 
C15 C12 B98 sing 85 n n 
C15 N16 B98 sing 86 n n 
C12 C13 B98 sing 87 n n 
C12 N11 B98 sing 88 n n 
C1 O2 B98 sing 89 n n 
C13 N14 B98 sing 90 n n 
C4 H4 B98 sing 91 n n 
C5 H5 B98 sing 92 n n 
C19 H19 B98 sing 93 n n 
C15 H15 B98 sing 94 n n 
C15 H15A B98 sing 95 n n 
C12 H12 B98 sing 96 n n 
C1 H1 B98 sing 97 n n 
C1 H1A B98 sing 98 n n 
C1 H1B B98 sing 99 n n 
C13 H13 B98 sing 100 n n 
C13 H13A B98 sing 101 n n 
N16 HN16 B98 sing 102 n n 
N11 HN11 B98 sing 103 n n 
N14 HN14 B98 sing 104 n n 
N14 HN1A B98 sing 105 n n 
#
_atom_sites.entry_id                     3FYK 
_atom_sites.fract_transf_matrix[1][1]    0.003928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           B98 
_pdbx_nonpoly_scheme.pdb_strand_id    X 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      372 
_pdbx_nonpoly_scheme.auth_seq_num     365 
_pdbx_nonpoly_scheme.pdb_mon_id       B98 
_pdbx_nonpoly_scheme.auth_mon_id      B98 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 B98 . . . B 2 83.128 262.867 106.158 1 75.01 ? C4 B98 372 X 1 
HETATM 2 C C5 B98 . . . B 2 84.449 262.676 106.457 1 75.37 ? C5 B98 372 X 1 
HETATM 3 C C19 B98 . . . B 2 82.439 261.855 108.238 1 75.91 ? C19 B98 372 X 1 
HETATM 4 C C18 B98 . . . B 2 83.767 261.647 108.569 1 76.19 ? C18 B98 372 X 1 
HETATM 5 C C17 B98 . . . B 2 84.347 261.051 109.73 1 76.75 ? C17 B98 372 X 1 
HETATM 6 C C3 B98 . . . B 2 82.157 262.466 107.033 1 75.38 ? C3 B98 372 X 1 
HETATM 7 C C6 B98 . . . B 2 84.72 262.069 107.66 1 75.93 ? C6 B98 372 X 1 
HETATM 8 C C8 B98 . . . B 2 85.725 261.009 109.711 1 77.25 ? C8 B98 372 X 1 
HETATM 9 C C9 B98 . . . B 2 86.743 260.534 110.612 1 78.44 ? C9 B98 372 X 1 
HETATM 10 C C15 B98 . . . B 2 84.162 260.146 112.007 1 78.32 ? C15 B98 372 X 1 
HETATM 11 C C12 B98 . . . B 2 85.163 259.021 111.845 1 79.05 ? C12 B98 372 X 1 
HETATM 12 C C1 B98 . . . B 2 80.022 262.172 107.645 1 74.88 ? C1 B98 372 X 1 
HETATM 13 C C13 B98 . . . B 2 84.679 257.894 110.964 1 78.88 ? C13 B98 372 X 1 
HETATM 14 N N16 B98 . . . B 2 83.576 260.568 110.738 1 77.68 ? N16 B98 372 X 1 
HETATM 15 N N11 B98 . . . B 2 86.462 259.455 111.417 1 79.17 ? N11 B98 372 X 1 
HETATM 16 N N14 B98 . . . B 2 83.513 257.322 111.666 1 78.72 ? N14 B98 372 X 1 
HETATM 17 O O10 B98 . . . B 2 87.843 261.067 110.656 1 78.47 ? O10 B98 372 X 1 
HETATM 18 O O2 B98 . . . B 2 80.858 262.708 106.634 1 75.07 ? O2 B98 372 X 1 
HETATM 19 S S7 B98 . . . B 2 86.281 261.722 108.263 1 76.51 ? S7 B98 372 X 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#