data_3FYV
#
_model_server_result.job_id            mvH9OHt5eshi4ImwPc6ZoA 
_model_server_result.datetime_utc      '2024-11-09 02:24:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    3FYV 
#
_exptl.entry_id    3FYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              354.403 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FYV 
_cell.length_a            79.093 
_cell.length_b            79.093 
_cell.length_c            107.781 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H22 N4 O3' 
_chem_comp.formula_weight    354.403 
_chem_comp.id                XCF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C3 XCF sing 445 n n 
C3 N5 XCF doub 446 n y 
C3 N2 XCF sing 447 n y 
N5 C6 XCF sing 448 n y 
N2 C1 XCF doub 449 n y 
C1 C8 XCF sing 450 n y 
C8 C6 XCF doub 451 n y 
C8 C9 XCF sing 452 n n 
C6 N7 XCF sing 453 n n 
C9 C10 XCF sing 454 n n 
C10 C11 XCF doub 455 n y 
C10 C21 XCF sing 456 n y 
C11 C27 XCF sing 457 n n 
C11 C12 XCF sing 458 n y 
C27 C28 XCF doub 459 n n 
C28 C14 XCF sing 460 n n 
C14 C24 XCF sing 461 n n 
C14 O13 XCF sing 462 n n 
C24 C25 XCF sing 463 n n 
C24 C26 XCF sing 464 n n 
C25 C26 XCF sing 465 n n 
O13 C12 XCF sing 466 n n 
C12 C15 XCF doub 467 n y 
C15 O16 XCF sing 468 n n 
C15 C18 XCF sing 469 n y 
O16 C17 XCF sing 470 n n 
C18 C21 XCF doub 471 n y 
C18 O19 XCF sing 472 n n 
O19 C20 XCF sing 473 n n 
N4 HN4 XCF sing 474 n n 
N4 HN4A XCF sing 475 n n 
C1 H1 XCF sing 476 n n 
N7 HN7 XCF sing 477 n n 
N7 HN7A XCF sing 478 n n 
C9 H9 XCF sing 479 n n 
C9 H9A XCF sing 480 n n 
C27 H27 XCF sing 481 n n 
C28 H28 XCF sing 482 n n 
C14 H14 XCF sing 483 n n 
C24 H24 XCF sing 484 n n 
C25 H25 XCF sing 485 n n 
C25 H25A XCF sing 486 n n 
C26 H26 XCF sing 487 n n 
C26 H26A XCF sing 488 n n 
C17 H17 XCF sing 489 n n 
C17 H17A XCF sing 490 n n 
C17 H17B XCF sing 491 n n 
C21 H21 XCF sing 492 n n 
C20 H20 XCF sing 493 n n 
C20 H20A XCF sing 494 n n 
C20 H20B XCF sing 495 n n 
#
_atom_sites.entry_id                     3FYV 
_atom_sites.fract_transf_matrix[1][1]    0.012643 
_atom_sites.fract_transf_matrix[1][2]    0.0073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014599 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 301 301 NDP NAP . 
C 3 XCF X 1 300 300 XCF XCP . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 7 HOH HOH . 
D 4 HOH X 8 166 8 HOH HOH . 
D 4 HOH X 9 167 9 HOH HOH . 
D 4 HOH X 10 168 10 HOH HOH . 
D 4 HOH X 11 169 11 HOH HOH . 
D 4 HOH X 12 170 12 HOH HOH . 
D 4 HOH X 13 171 13 HOH HOH . 
D 4 HOH X 14 172 14 HOH HOH . 
D 4 HOH X 15 173 15 HOH HOH . 
D 4 HOH X 16 174 16 HOH HOH . 
D 4 HOH X 17 175 17 HOH HOH . 
D 4 HOH X 18 176 18 HOH HOH . 
D 4 HOH X 19 177 19 HOH HOH . 
D 4 HOH X 20 178 20 HOH HOH . 
D 4 HOH X 21 179 21 HOH HOH . 
D 4 HOH X 22 180 22 HOH HOH . 
D 4 HOH X 23 181 23 HOH HOH . 
D 4 HOH X 24 182 24 HOH HOH . 
D 4 HOH X 25 183 25 HOH HOH . 
D 4 HOH X 26 184 26 HOH HOH . 
D 4 HOH X 27 185 27 HOH HOH . 
D 4 HOH X 28 186 28 HOH HOH . 
D 4 HOH X 29 187 29 HOH HOH . 
D 4 HOH X 30 188 30 HOH HOH . 
D 4 HOH X 31 189 31 HOH HOH . 
D 4 HOH X 32 190 32 HOH HOH . 
D 4 HOH X 33 191 33 HOH HOH . 
D 4 HOH X 34 192 34 HOH HOH . 
D 4 HOH X 35 193 35 HOH HOH . 
D 4 HOH X 36 194 36 HOH HOH . 
D 4 HOH X 37 195 37 HOH HOH . 
D 4 HOH X 38 196 38 HOH HOH . 
D 4 HOH X 39 197 39 HOH HOH . 
D 4 HOH X 40 198 40 HOH HOH . 
D 4 HOH X 41 199 41 HOH HOH . 
D 4 HOH X 42 200 42 HOH HOH . 
D 4 HOH X 43 201 43 HOH HOH . 
D 4 HOH X 44 202 44 HOH HOH . 
D 4 HOH X 45 203 46 HOH HOH . 
D 4 HOH X 46 204 47 HOH HOH . 
D 4 HOH X 47 205 48 HOH HOH . 
D 4 HOH X 48 206 49 HOH HOH . 
D 4 HOH X 49 207 50 HOH HOH . 
D 4 HOH X 50 208 51 HOH HOH . 
D 4 HOH X 51 209 52 HOH HOH . 
D 4 HOH X 52 210 53 HOH HOH . 
D 4 HOH X 53 211 54 HOH HOH . 
D 4 HOH X 54 212 55 HOH HOH . 
D 4 HOH X 55 213 56 HOH HOH . 
D 4 HOH X 56 214 57 HOH HOH . 
D 4 HOH X 57 215 58 HOH HOH . 
D 4 HOH X 58 216 59 HOH HOH . 
D 4 HOH X 59 217 60 HOH HOH . 
D 4 HOH X 60 218 61 HOH HOH . 
D 4 HOH X 61 219 62 HOH HOH . 
D 4 HOH X 62 220 63 HOH HOH . 
D 4 HOH X 63 221 64 HOH HOH . 
D 4 HOH X 64 222 65 HOH HOH . 
D 4 HOH X 65 223 66 HOH HOH . 
D 4 HOH X 66 224 67 HOH HOH . 
D 4 HOH X 67 225 68 HOH HOH . 
D 4 HOH X 68 226 69 HOH HOH . 
D 4 HOH X 69 227 70 HOH HOH . 
D 4 HOH X 70 228 71 HOH HOH . 
D 4 HOH X 71 229 72 HOH HOH . 
D 4 HOH X 72 230 73 HOH HOH . 
D 4 HOH X 73 231 74 HOH HOH . 
D 4 HOH X 74 232 75 HOH HOH . 
D 4 HOH X 75 233 76 HOH HOH . 
D 4 HOH X 76 234 77 HOH HOH . 
D 4 HOH X 77 235 78 HOH HOH . 
D 4 HOH X 78 236 79 HOH HOH . 
D 4 HOH X 79 237 80 HOH HOH . 
D 4 HOH X 80 238 81 HOH HOH . 
D 4 HOH X 81 239 82 HOH HOH . 
D 4 HOH X 82 240 83 HOH HOH . 
D 4 HOH X 83 241 84 HOH HOH . 
D 4 HOH X 84 242 85 HOH HOH . 
D 4 HOH X 85 243 86 HOH HOH . 
D 4 HOH X 86 244 87 HOH HOH . 
D 4 HOH X 87 245 88 HOH HOH . 
D 4 HOH X 88 246 89 HOH HOH . 
D 4 HOH X 89 247 90 HOH HOH . 
D 4 HOH X 90 248 91 HOH HOH . 
D 4 HOH X 91 249 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N4 XCF . . . C 3 26.729 7.145 40.636 1 54.28 ? N4 XCF 300 X 1 
HETATM 2 C C3 XCF . . . C 3 27.233 8.395 40.757 1 54.37 ? C3 XCF 300 X 1 
HETATM 3 N N5 XCF . . . C 3 26.776 9.355 39.947 1 54.29 ? N5 XCF 300 X 1 
HETATM 4 N N2 XCF . . . C 3 28.176 8.659 41.674 1 54.36 ? N2 XCF 300 X 1 
HETATM 5 C C1 XCF . . . C 3 28.685 9.891 41.792 1 54.39 ? C1 XCF 300 X 1 
HETATM 6 C C8 XCF . . . C 3 28.226 10.907 40.963 1 54.61 ? C8 XCF 300 X 1 
HETATM 7 C C6 XCF . . . C 3 27.243 10.6 40.028 1 54.33 ? C6 XCF 300 X 1 
HETATM 8 N N7 XCF . . . C 3 26.746 11.536 39.185 1 54.32 ? N7 XCF 300 X 1 
HETATM 9 C C9 XCF . . . C 3 28.762 12.329 41.051 1 55.03 ? C9 XCF 300 X 1 
HETATM 10 C C10 XCF . . . C 3 29.832 12.591 42.107 1 55.35 ? C10 XCF 300 X 1 
HETATM 11 C C11 XCF . . . C 3 31.124 12.105 41.974 1 55.41 ? C11 XCF 300 X 1 
HETATM 12 C C27 XCF . . . C 3 31.511 11.323 40.787 1 55.68 ? C27 XCF 300 X 1 
HETATM 13 C C28 XCF . . . C 3 32.793 11.036 40.577 1 56.15 ? C28 XCF 300 X 1 
HETATM 14 C C14 XCF . . . C 3 33.886 11.497 41.532 1 56.3 ? C14 XCF 300 X 1 
HETATM 15 C C24 XCF . . . C 3 34.976 10.426 41.668 1 56.44 ? C24 XCF 300 X 1 
HETATM 16 C C25 XCF . . . C 3 36.172 10.563 40.725 1 56.54 ? C25 XCF 300 X 1 
HETATM 17 C C26 XCF . . . C 3 36.342 10.857 42.214 1 56.41 ? C26 XCF 300 X 1 
HETATM 18 O O13 XCF . . . C 3 33.361 11.879 42.811 1 55.68 ? O13 XCF 300 X 1 
HETATM 19 C C12 XCF . . . C 3 32.087 12.377 42.934 1 55.67 ? C12 XCF 300 X 1 
HETATM 20 C C15 XCF . . . C 3 31.773 13.143 44.043 1 55.68 ? C15 XCF 300 X 1 
HETATM 21 O O16 XCF . . . C 3 32.726 13.407 45.001 1 55.83 ? O16 XCF 300 X 1 
HETATM 22 C C17 XCF . . . C 3 34.111 13.504 44.659 1 56.2 ? C17 XCF 300 X 1 
HETATM 23 C C18 XCF . . . C 3 30.492 13.641 44.188 1 55.68 ? C18 XCF 300 X 1 
HETATM 24 C C21 XCF . . . C 3 29.523 13.371 43.218 1 55.65 ? C21 XCF 300 X 1 
HETATM 25 O O19 XCF . . . C 3 30.186 14.406 45.285 1 55.46 ? O19 XCF 300 X 1 
HETATM 26 C C20 XCF . . . C 3 28.869 14.939 45.404 1 55.85 ? C20 XCF 300 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#