data_3FYV
#
_model_server_result.job_id            E5oEurqHOOTcUF9s6A5PXQ 
_model_server_result.datetime_utc      '2024-11-09 02:24:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3FYV 
#
_exptl.entry_id    3FYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FYV 
_cell.length_a            79.093 
_cell.length_b            79.093 
_cell.length_c            107.781 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 224 n n 
PA O2A NDP sing 225 n n 
PA O5B NDP sing 226 n n 
PA O3 NDP sing 227 n n 
O2A HOA2 NDP sing 228 n n 
O5B C5B NDP sing 229 n n 
C5B C4B NDP sing 230 n n 
C5B H51A NDP sing 231 n n 
C5B H52A NDP sing 232 n n 
C4B O4B NDP sing 233 n n 
C4B C3B NDP sing 234 n n 
C4B H4B NDP sing 235 n n 
O4B C1B NDP sing 236 n n 
C3B O3B NDP sing 237 n n 
C3B C2B NDP sing 238 n n 
C3B H3B NDP sing 239 n n 
O3B HO3A NDP sing 240 n n 
C2B O2B NDP sing 241 n n 
C2B C1B NDP sing 242 n n 
C2B H2B NDP sing 243 n n 
O2B P2B NDP sing 244 n n 
C1B N9A NDP sing 245 n n 
C1B H1B NDP sing 246 n n 
N9A C8A NDP sing 247 n y 
N9A C4A NDP sing 248 n y 
C8A N7A NDP doub 249 n y 
C8A H8A NDP sing 250 n n 
N7A C5A NDP sing 251 n y 
C5A C6A NDP sing 252 n y 
C5A C4A NDP doub 253 n y 
C6A N6A NDP sing 254 n n 
C6A N1A NDP doub 255 n y 
N6A H61A NDP sing 256 n n 
N6A H62A NDP sing 257 n n 
N1A C2A NDP sing 258 n y 
C2A N3A NDP doub 259 n y 
C2A H2A NDP sing 260 n n 
N3A C4A NDP sing 261 n y 
O3 PN NDP sing 262 n n 
PN O1N NDP doub 263 n n 
PN O2N NDP sing 264 n n 
PN O5D NDP sing 265 n n 
O2N H21N NDP sing 266 n n 
O5D C5D NDP sing 267 n n 
C5D C4D NDP sing 268 n n 
C5D H51N NDP sing 269 n n 
C5D H52N NDP sing 270 n n 
C4D O4D NDP sing 271 n n 
C4D C3D NDP sing 272 n n 
C4D H4D NDP sing 273 n n 
O4D C1D NDP sing 274 n n 
C3D O3D NDP sing 275 n n 
C3D C2D NDP sing 276 n n 
C3D H3D NDP sing 277 n n 
O3D HO3N NDP sing 278 n n 
C2D O2D NDP sing 279 n n 
C2D C1D NDP sing 280 n n 
C2D H2D NDP sing 281 n n 
O2D HO2N NDP sing 282 n n 
C1D N1N NDP sing 283 n n 
C1D H1D NDP sing 284 n n 
N1N C2N NDP sing 285 n n 
N1N C6N NDP sing 286 n n 
C2N C3N NDP doub 287 n n 
C2N H2N NDP sing 288 n n 
C3N C7N NDP sing 289 n n 
C3N C4N NDP sing 290 n n 
C7N O7N NDP doub 291 n n 
C7N N7N NDP sing 292 n n 
N7N H71N NDP sing 293 n n 
N7N H72N NDP sing 294 n n 
C4N C5N NDP sing 295 n n 
C4N H41N NDP sing 296 n n 
C4N H42N NDP sing 297 n n 
C5N C6N NDP doub 298 n n 
C5N H5N NDP sing 299 n n 
C6N H6N NDP sing 300 n n 
P2B O1X NDP doub 301 n n 
P2B O2X NDP sing 302 n n 
P2B O3X NDP sing 303 n n 
O2X HOP2 NDP sing 304 n n 
O3X HOP3 NDP sing 305 n n 
#
_atom_sites.entry_id                     3FYV 
_atom_sites.fract_transf_matrix[1][1]    0.012643 
_atom_sites.fract_transf_matrix[1][2]    0.0073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014599 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP X 1 301 301 NDP NAP . 
C 3 XCF X 1 300 300 XCF XCP . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 7 HOH HOH . 
D 4 HOH X 8 166 8 HOH HOH . 
D 4 HOH X 9 167 9 HOH HOH . 
D 4 HOH X 10 168 10 HOH HOH . 
D 4 HOH X 11 169 11 HOH HOH . 
D 4 HOH X 12 170 12 HOH HOH . 
D 4 HOH X 13 171 13 HOH HOH . 
D 4 HOH X 14 172 14 HOH HOH . 
D 4 HOH X 15 173 15 HOH HOH . 
D 4 HOH X 16 174 16 HOH HOH . 
D 4 HOH X 17 175 17 HOH HOH . 
D 4 HOH X 18 176 18 HOH HOH . 
D 4 HOH X 19 177 19 HOH HOH . 
D 4 HOH X 20 178 20 HOH HOH . 
D 4 HOH X 21 179 21 HOH HOH . 
D 4 HOH X 22 180 22 HOH HOH . 
D 4 HOH X 23 181 23 HOH HOH . 
D 4 HOH X 24 182 24 HOH HOH . 
D 4 HOH X 25 183 25 HOH HOH . 
D 4 HOH X 26 184 26 HOH HOH . 
D 4 HOH X 27 185 27 HOH HOH . 
D 4 HOH X 28 186 28 HOH HOH . 
D 4 HOH X 29 187 29 HOH HOH . 
D 4 HOH X 30 188 30 HOH HOH . 
D 4 HOH X 31 189 31 HOH HOH . 
D 4 HOH X 32 190 32 HOH HOH . 
D 4 HOH X 33 191 33 HOH HOH . 
D 4 HOH X 34 192 34 HOH HOH . 
D 4 HOH X 35 193 35 HOH HOH . 
D 4 HOH X 36 194 36 HOH HOH . 
D 4 HOH X 37 195 37 HOH HOH . 
D 4 HOH X 38 196 38 HOH HOH . 
D 4 HOH X 39 197 39 HOH HOH . 
D 4 HOH X 40 198 40 HOH HOH . 
D 4 HOH X 41 199 41 HOH HOH . 
D 4 HOH X 42 200 42 HOH HOH . 
D 4 HOH X 43 201 43 HOH HOH . 
D 4 HOH X 44 202 44 HOH HOH . 
D 4 HOH X 45 203 46 HOH HOH . 
D 4 HOH X 46 204 47 HOH HOH . 
D 4 HOH X 47 205 48 HOH HOH . 
D 4 HOH X 48 206 49 HOH HOH . 
D 4 HOH X 49 207 50 HOH HOH . 
D 4 HOH X 50 208 51 HOH HOH . 
D 4 HOH X 51 209 52 HOH HOH . 
D 4 HOH X 52 210 53 HOH HOH . 
D 4 HOH X 53 211 54 HOH HOH . 
D 4 HOH X 54 212 55 HOH HOH . 
D 4 HOH X 55 213 56 HOH HOH . 
D 4 HOH X 56 214 57 HOH HOH . 
D 4 HOH X 57 215 58 HOH HOH . 
D 4 HOH X 58 216 59 HOH HOH . 
D 4 HOH X 59 217 60 HOH HOH . 
D 4 HOH X 60 218 61 HOH HOH . 
D 4 HOH X 61 219 62 HOH HOH . 
D 4 HOH X 62 220 63 HOH HOH . 
D 4 HOH X 63 221 64 HOH HOH . 
D 4 HOH X 64 222 65 HOH HOH . 
D 4 HOH X 65 223 66 HOH HOH . 
D 4 HOH X 66 224 67 HOH HOH . 
D 4 HOH X 67 225 68 HOH HOH . 
D 4 HOH X 68 226 69 HOH HOH . 
D 4 HOH X 69 227 70 HOH HOH . 
D 4 HOH X 70 228 71 HOH HOH . 
D 4 HOH X 71 229 72 HOH HOH . 
D 4 HOH X 72 230 73 HOH HOH . 
D 4 HOH X 73 231 74 HOH HOH . 
D 4 HOH X 74 232 75 HOH HOH . 
D 4 HOH X 75 233 76 HOH HOH . 
D 4 HOH X 76 234 77 HOH HOH . 
D 4 HOH X 77 235 78 HOH HOH . 
D 4 HOH X 78 236 79 HOH HOH . 
D 4 HOH X 79 237 80 HOH HOH . 
D 4 HOH X 80 238 81 HOH HOH . 
D 4 HOH X 81 239 82 HOH HOH . 
D 4 HOH X 82 240 83 HOH HOH . 
D 4 HOH X 83 241 84 HOH HOH . 
D 4 HOH X 84 242 85 HOH HOH . 
D 4 HOH X 85 243 86 HOH HOH . 
D 4 HOH X 86 244 87 HOH HOH . 
D 4 HOH X 87 245 88 HOH HOH . 
D 4 HOH X 88 246 89 HOH HOH . 
D 4 HOH X 89 247 90 HOH HOH . 
D 4 HOH X 90 248 91 HOH HOH . 
D 4 HOH X 91 249 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 23.892 21.525 42.312 1 47.31 ? PA NDP 301 X 1 
HETATM 2 O O1A NDP . . . B 2 25.15 20.748 42.166 1 47.07 ? O1A NDP 301 X 1 
HETATM 3 O O2A NDP . . . B 2 22.771 21.022 41.499 1 46.34 ? O2A NDP 301 X 1 
HETATM 4 O O5B NDP . . . B 2 24.248 23.023 41.909 1 47.15 ? O5B NDP 301 X 1 
HETATM 5 C C5B NDP . . . B 2 23.381 24.071 42.243 1 46.39 ? C5B NDP 301 X 1 
HETATM 6 C C4B NDP . . . B 2 23.838 25.235 41.405 1 46.02 ? C4B NDP 301 X 1 
HETATM 7 O O4B NDP . . . B 2 23.803 24.887 40.038 1 45.65 ? O4B NDP 301 X 1 
HETATM 8 C C3B NDP . . . B 2 22.977 26.477 41.537 1 46.28 ? C3B NDP 301 X 1 
HETATM 9 O O3B NDP . . . B 2 23.222 27.165 42.738 1 46 ? O3B NDP 301 X 1 
HETATM 10 C C2B NDP . . . B 2 23.422 27.194 40.288 1 46.3 ? C2B NDP 301 X 1 
HETATM 11 O O2B NDP . . . B 2 24.721 27.69 40.442 1 46.5 ? O2B NDP 301 X 1 
HETATM 12 C C1B NDP . . . B 2 23.54 26.06 39.288 1 46.58 ? C1B NDP 301 X 1 
HETATM 13 N N9A NDP . . . B 2 22.308 25.951 38.502 1 46.57 ? N9A NDP 301 X 1 
HETATM 14 C C8A NDP . . . B 2 21.342 24.985 38.595 1 46.49 ? C8A NDP 301 X 1 
HETATM 15 N N7A NDP . . . B 2 20.384 25.26 37.68 1 46.97 ? N7A NDP 301 X 1 
HETATM 16 C C5A NDP . . . B 2 20.733 26.386 37.01 1 46.89 ? C5A NDP 301 X 1 
HETATM 17 C C6A NDP . . . B 2 20.12 27.098 35.99 1 46.77 ? C6A NDP 301 X 1 
HETATM 18 N N6A NDP . . . B 2 18.965 26.67 35.499 1 46.49 ? N6A NDP 301 X 1 
HETATM 19 N N1A NDP . . . B 2 20.722 28.242 35.491 1 46.8 ? N1A NDP 301 X 1 
HETATM 20 C C2A NDP . . . B 2 21.932 28.666 36.018 1 46.75 ? C2A NDP 301 X 1 
HETATM 21 N N3A NDP . . . B 2 22.532 27.956 37.042 1 46.84 ? N3A NDP 301 X 1 
HETATM 22 C C4A NDP . . . B 2 21.941 26.833 37.523 1 46.94 ? C4A NDP 301 X 1 
HETATM 23 O O3 NDP . . . B 2 23.503 21.747 43.862 1 47.99 ? O3 NDP 301 X 1 
HETATM 24 P PN NDP . . . B 2 22.585 20.987 44.948 1 48.24 ? PN NDP 301 X 1 
HETATM 25 O O1N NDP . . . B 2 21.176 21.082 44.501 1 49.1 ? O1N NDP 301 X 1 
HETATM 26 O O2N NDP . . . B 2 22.967 21.483 46.291 1 48.55 ? O2N NDP 301 X 1 
HETATM 27 O O5D NDP . . . B 2 23.092 19.466 44.877 1 47.46 ? O5D NDP 301 X 1 
HETATM 28 C C5D NDP . . . B 2 24.386 19.169 45.358 1 46.99 ? C5D NDP 301 X 1 
HETATM 29 C C4D NDP . . . B 2 24.353 17.857 46.133 1 46.78 ? C4D NDP 301 X 1 
HETATM 30 O O4D NDP . . . B 2 24.252 16.751 45.254 1 46.31 ? O4D NDP 301 X 1 
HETATM 31 C C3D NDP . . . B 2 25.619 17.638 46.933 1 46.59 ? C3D NDP 301 X 1 
HETATM 32 O O3D NDP . . . B 2 25.289 17.198 48.227 1 47.03 ? O3D NDP 301 X 1 
HETATM 33 C C2D NDP . . . B 2 26.359 16.532 46.235 1 45.98 ? C2D NDP 301 X 1 
HETATM 34 O O2D NDP . . . B 2 27.064 15.81 47.208 1 46.21 ? O2D NDP 301 X 1 
HETATM 35 C C1D NDP . . . B 2 25.209 15.77 45.6 1 45.62 ? C1D NDP 301 X 1 
HETATM 36 N N1N NDP . . . B 2 25.513 14.992 44.384 1 45.49 ? N1N NDP 301 X 1 
HETATM 37 C C2N NDP . . . B 2 25.275 13.651 44.436 1 45.17 ? C2N NDP 301 X 1 
HETATM 38 C C3N NDP . . . B 2 25.502 12.848 43.335 1 44.79 ? C3N NDP 301 X 1 
HETATM 39 C C7N NDP . . . B 2 25.086 11.409 43.402 1 44.23 ? C7N NDP 301 X 1 
HETATM 40 O O7N NDP . . . B 2 25.007 10.682 42.206 1 43.18 ? O7N NDP 301 X 1 
HETATM 41 N N7N NDP . . . B 2 24.814 10.871 44.595 1 43.81 ? N7N NDP 301 X 1 
HETATM 42 C C4N NDP . . . B 2 25.961 13.417 42.149 1 45.28 ? C4N NDP 301 X 1 
HETATM 43 C C5N NDP . . . B 2 26.186 14.79 42.102 1 45.39 ? C5N NDP 301 X 1 
HETATM 44 C C6N NDP . . . B 2 25.947 15.573 43.228 1 45.24 ? C6N NDP 301 X 1 
HETATM 45 P P2B NDP . . . B 2 25.043 29.201 40.921 1 46.73 ? P2B NDP 301 X 1 
HETATM 46 O O1X NDP . . . B 2 24.582 30.101 39.808 1 44.93 ? O1X NDP 301 X 1 
HETATM 47 O O2X NDP . . . B 2 26.545 29.2 41.107 1 46.28 ? O2X NDP 301 X 1 
HETATM 48 O O3X NDP . . . B 2 24.326 29.501 42.213 1 45.63 ? O3X NDP 301 X 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#