data_3FYW # _model_server_result.job_id kPm_NpBWz0pXq6EkHEPdpw _model_server_result.datetime_utc '2024-12-06 00:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FYW # _exptl.entry_id 3FYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FYW _cell.length_a 79.088 _cell.length_b 79.088 _cell.length_c 108.446 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O3' _chem_comp.formula_weight 354.403 _chem_comp.id XCF _chem_comp.mon_nstd_flag . _chem_comp.name 5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C3 XCF sing 445 n n C3 N5 XCF doub 446 n y C3 N2 XCF sing 447 n y N5 C6 XCF sing 448 n y N2 C1 XCF doub 449 n y C1 C8 XCF sing 450 n y C8 C6 XCF doub 451 n y C8 C9 XCF sing 452 n n C6 N7 XCF sing 453 n n C9 C10 XCF sing 454 n n C10 C11 XCF doub 455 n y C10 C21 XCF sing 456 n y C11 C27 XCF sing 457 n n C11 C12 XCF sing 458 n y C27 C28 XCF doub 459 n n C28 C14 XCF sing 460 n n C14 C24 XCF sing 461 n n C14 O13 XCF sing 462 n n C24 C25 XCF sing 463 n n C24 C26 XCF sing 464 n n C25 C26 XCF sing 465 n n O13 C12 XCF sing 466 n n C12 C15 XCF doub 467 n y C15 O16 XCF sing 468 n n C15 C18 XCF sing 469 n y O16 C17 XCF sing 470 n n C18 C21 XCF doub 471 n y C18 O19 XCF sing 472 n n O19 C20 XCF sing 473 n n N4 HN4 XCF sing 474 n n N4 HN4A XCF sing 475 n n C1 H1 XCF sing 476 n n N7 HN7 XCF sing 477 n n N7 HN7A XCF sing 478 n n C9 H9 XCF sing 479 n n C9 H9A XCF sing 480 n n C27 H27 XCF sing 481 n n C28 H28 XCF sing 482 n n C14 H14 XCF sing 483 n n C24 H24 XCF sing 484 n n C25 H25 XCF sing 485 n n C25 H25A XCF sing 486 n n C26 H26 XCF sing 487 n n C26 H26A XCF sing 488 n n C17 H17 XCF sing 489 n n C17 H17A XCF sing 490 n n C17 H17B XCF sing 491 n n C21 H21 XCF sing 492 n n C20 H20 XCF sing 493 n n C20 H20A XCF sing 494 n n C20 H20B XCF sing 495 n n # _atom_sites.entry_id 3FYW _atom_sites.fract_transf_matrix[1][1] 0.012644 _atom_sites.fract_transf_matrix[1][2] 0.0073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP X 1 301 301 NDP NAP . C 3 XCF X 1 300 300 XCF XCP . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 3 HOH HOH . D 4 HOH X 3 161 4 HOH HOH . D 4 HOH X 4 162 5 HOH HOH . D 4 HOH X 5 163 6 HOH HOH . D 4 HOH X 6 164 7 HOH HOH . D 4 HOH X 7 165 8 HOH HOH . D 4 HOH X 8 166 9 HOH HOH . D 4 HOH X 9 167 11 HOH HOH . D 4 HOH X 10 168 12 HOH HOH . D 4 HOH X 11 169 13 HOH HOH . D 4 HOH X 12 170 14 HOH HOH . D 4 HOH X 13 171 15 HOH HOH . D 4 HOH X 14 172 16 HOH HOH . D 4 HOH X 15 173 17 HOH HOH . D 4 HOH X 16 174 18 HOH HOH . D 4 HOH X 17 175 19 HOH HOH . D 4 HOH X 18 176 20 HOH HOH . D 4 HOH X 19 177 21 HOH HOH . D 4 HOH X 20 178 22 HOH HOH . D 4 HOH X 21 179 23 HOH HOH . D 4 HOH X 22 180 24 HOH HOH . D 4 HOH X 23 181 25 HOH HOH . D 4 HOH X 24 182 27 HOH HOH . D 4 HOH X 25 183 29 HOH HOH . D 4 HOH X 26 184 32 HOH HOH . D 4 HOH X 27 185 33 HOH HOH . D 4 HOH X 28 186 34 HOH HOH . D 4 HOH X 29 187 35 HOH HOH . D 4 HOH X 30 188 36 HOH HOH . D 4 HOH X 31 189 37 HOH HOH . D 4 HOH X 32 190 38 HOH HOH . D 4 HOH X 33 191 39 HOH HOH . D 4 HOH X 34 192 42 HOH HOH . D 4 HOH X 35 193 43 HOH HOH . D 4 HOH X 36 194 44 HOH HOH . D 4 HOH X 37 195 45 HOH HOH . D 4 HOH X 38 196 46 HOH HOH . D 4 HOH X 39 197 48 HOH HOH . D 4 HOH X 40 198 49 HOH HOH . D 4 HOH X 41 199 50 HOH HOH . D 4 HOH X 42 200 51 HOH HOH . D 4 HOH X 43 201 52 HOH HOH . D 4 HOH X 44 202 53 HOH HOH . D 4 HOH X 45 203 54 HOH HOH . D 4 HOH X 46 204 55 HOH HOH . D 4 HOH X 47 205 56 HOH HOH . D 4 HOH X 48 206 57 HOH HOH . D 4 HOH X 49 207 58 HOH HOH . D 4 HOH X 50 208 59 HOH HOH . D 4 HOH X 51 209 60 HOH HOH . D 4 HOH X 52 210 61 HOH HOH . D 4 HOH X 53 211 62 HOH HOH . D 4 HOH X 54 212 63 HOH HOH . D 4 HOH X 55 213 64 HOH HOH . D 4 HOH X 56 214 65 HOH HOH . D 4 HOH X 57 215 66 HOH HOH . D 4 HOH X 58 216 67 HOH HOH . D 4 HOH X 59 217 68 HOH HOH . D 4 HOH X 60 218 69 HOH HOH . D 4 HOH X 61 219 70 HOH HOH . D 4 HOH X 62 220 71 HOH HOH . D 4 HOH X 63 221 72 HOH HOH . D 4 HOH X 64 222 73 HOH HOH . D 4 HOH X 65 223 74 HOH HOH . D 4 HOH X 66 224 75 HOH HOH . D 4 HOH X 67 225 76 HOH HOH . D 4 HOH X 68 226 78 HOH HOH . D 4 HOH X 69 227 79 HOH HOH . D 4 HOH X 70 228 80 HOH HOH . D 4 HOH X 71 229 81 HOH HOH . D 4 HOH X 72 230 82 HOH HOH . D 4 HOH X 73 231 83 HOH HOH . D 4 HOH X 74 232 84 HOH HOH . D 4 HOH X 75 233 85 HOH HOH . D 4 HOH X 76 234 86 HOH HOH . D 4 HOH X 77 235 87 HOH HOH . D 4 HOH X 78 236 88 HOH HOH . D 4 HOH X 79 237 89 HOH HOH . D 4 HOH X 80 238 90 HOH HOH . D 4 HOH X 81 239 91 HOH HOH . D 4 HOH X 82 240 92 HOH HOH . D 4 HOH X 83 241 93 HOH HOH . D 4 HOH X 84 242 94 HOH HOH . D 4 HOH X 85 243 95 HOH HOH . D 4 HOH X 86 244 96 HOH HOH . D 4 HOH X 87 245 97 HOH HOH . D 4 HOH X 88 246 98 HOH HOH . D 4 HOH X 89 247 99 HOH HOH . D 4 HOH X 90 248 100 HOH HOH . D 4 HOH X 91 249 101 HOH HOH . D 4 HOH X 92 250 102 HOH HOH . D 4 HOH X 93 251 103 HOH HOH . D 4 HOH X 94 252 104 HOH HOH . D 4 HOH X 95 253 106 HOH HOH . D 4 HOH X 96 254 107 HOH HOH . D 4 HOH X 97 255 108 HOH HOH . D 4 HOH X 98 256 109 HOH HOH . D 4 HOH X 99 257 110 HOH HOH . D 4 HOH X 100 258 111 HOH HOH . D 4 HOH X 101 259 112 HOH HOH . D 4 HOH X 102 260 113 HOH HOH . D 4 HOH X 103 261 114 HOH HOH . D 4 HOH X 104 262 115 HOH HOH . D 4 HOH X 105 263 116 HOH HOH . D 4 HOH X 106 264 117 HOH HOH . D 4 HOH X 107 265 118 HOH HOH . D 4 HOH X 108 266 119 HOH HOH . D 4 HOH X 109 267 120 HOH HOH . D 4 HOH X 110 268 121 HOH HOH . D 4 HOH X 111 269 122 HOH HOH . D 4 HOH X 112 270 123 HOH HOH . D 4 HOH X 113 271 124 HOH HOH . D 4 HOH X 114 272 125 HOH HOH . D 4 HOH X 115 273 126 HOH HOH . D 4 HOH X 116 274 127 HOH HOH . D 4 HOH X 117 275 128 HOH HOH . D 4 HOH X 118 276 129 HOH HOH . D 4 HOH X 119 277 130 HOH HOH . D 4 HOH X 120 278 131 HOH HOH . D 4 HOH X 121 279 132 HOH HOH . D 4 HOH X 122 280 133 HOH HOH . D 4 HOH X 123 281 134 HOH HOH . D 4 HOH X 124 282 135 HOH HOH . D 4 HOH X 125 283 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 XCF . . . C 3 26.759 7.203 40.887 1 49.89 ? N4 XCF 300 X 1 HETATM 2 C C3 XCF . . . C 3 27.247 8.46 41.037 1 50.06 ? C3 XCF 300 X 1 HETATM 3 N N5 XCF . . . C 3 26.756 9.439 40.27 1 50 ? N5 XCF 300 X 1 HETATM 4 N N2 XCF . . . C 3 28.208 8.71 41.941 1 50.01 ? N2 XCF 300 X 1 HETATM 5 C C1 XCF . . . C 3 28.698 9.949 42.095 1 50.1 ? C1 XCF 300 X 1 HETATM 6 C C8 XCF . . . C 3 28.204 10.981 41.308 1 50.07 ? C8 XCF 300 X 1 HETATM 7 C C6 XCF . . . C 3 27.212 10.689 40.387 1 49.98 ? C6 XCF 300 X 1 HETATM 8 N N7 XCF . . . C 3 26.7 11.662 39.6 1 49.99 ? N7 XCF 300 X 1 HETATM 9 C C9 XCF . . . C 3 28.706 12.409 41.418 1 50.32 ? C9 XCF 300 X 1 HETATM 10 C C10 XCF . . . C 3 29.781 12.633 42.465 1 50.46 ? C10 XCF 300 X 1 HETATM 11 C C11 XCF . . . C 3 31.033 12.048 42.343 1 50.52 ? C11 XCF 300 X 1 HETATM 12 C C27 XCF . . . C 3 31.368 11.21 41.174 1 50.56 ? C27 XCF 300 X 1 HETATM 13 C C28 XCF . . . C 3 32.624 10.815 40.98 1 50.61 ? C28 XCF 300 X 1 HETATM 14 C C14 XCF . . . C 3 33.735 11.183 41.946 1 50.84 ? C14 XCF 300 X 1 HETATM 15 C C24 XCF . . . C 3 34.61 12.271 41.311 1 50.85 ? C24 XCF 300 X 1 HETATM 16 C C25 XCF . . . C 3 35.84 11.826 40.524 1 50.93 ? C25 XCF 300 X 1 HETATM 17 C C26 XCF . . . C 3 36.005 12.457 41.904 1 50.89 ? C26 XCF 300 X 1 HETATM 18 O O13 XCF . . . C 3 33.246 11.69 43.188 1 50.69 ? O13 XCF 300 X 1 HETATM 19 C C12 XCF . . . C 3 32.009 12.279 43.298 1 50.64 ? C12 XCF 300 X 1 HETATM 20 C C15 XCF . . . C 3 31.738 13.091 44.385 1 50.54 ? C15 XCF 300 X 1 HETATM 21 O O16 XCF . . . C 3 32.706 13.308 45.329 1 50.63 ? O16 XCF 300 X 1 HETATM 22 C C17 XCF . . . C 3 34.076 13.42 44.943 1 50.77 ? C17 XCF 300 X 1 HETATM 23 C C18 XCF . . . C 3 30.495 13.683 44.517 1 50.55 ? C18 XCF 300 X 1 HETATM 24 C C21 XCF . . . C 3 29.512 13.458 43.555 1 50.44 ? C21 XCF 300 X 1 HETATM 25 O O19 XCF . . . C 3 30.25 14.486 45.602 1 50.5 ? O19 XCF 300 X 1 HETATM 26 C C20 XCF . . . C 3 29.017 15.195 45.706 1 50.59 ? C20 XCF 300 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #