data_3FYX # _model_server_result.job_id FaM16XQeSHKgVM-IN9jbAA _model_server_result.datetime_utc '2024-11-21 13:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":341}' # _entry.id 3FYX # _exptl.entry_id 3FYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6,7,9,10,17,18,20,21-octahydrodibenzo[b,k][1,4,7,10,13,16]hexaoxacyclooctadecin-2-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FYX _cell.length_a 135.52 _cell.length_b 135.52 _cell.length_c 47.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.76 117.363763 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.52 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 16 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 16 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 451 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 451 _struct_conn.ptnr2_auth_seq_id 341 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.61 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H27 N O7' _chem_comp.formula_weight 417.452 _chem_comp.id 451 _chem_comp.mon_nstd_flag . _chem_comp.name N-(6,7,9,10,17,18,20,21-octahydrodibenzo[b,k][1,4,7,10,13,16]hexaoxacyclooctadecin-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(Dibenzo-18-crown-6-ether)-acetamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 451 doub 1 n y C1 C6 451 sing 2 n y C1 H1 451 sing 3 n n N27 C2 451 sing 4 n n C2 C3 451 sing 5 n y C3 C4 451 doub 6 n y C3 H3 451 sing 7 n n C4 C5 451 sing 8 n y C4 O22 451 sing 9 n n C6 C5 451 doub 10 n y C5 O7 451 sing 11 n n C6 H6 451 sing 12 n n C8 O7 451 sing 13 n n C8 C9 451 sing 14 n n C8 H8 451 sing 15 n n C8 H8A 451 sing 16 n n C9 O10 451 sing 17 n n C9 H9 451 sing 18 n n C9 H9A 451 sing 19 n n O10 C11 451 sing 20 n n C11 C12 451 sing 21 n n C11 H11 451 sing 22 n n C11 H11A 451 sing 23 n n O13 C12 451 sing 24 n n C12 H12 451 sing 25 n n C12 H12A 451 sing 26 n n O13 C14 451 sing 27 n n C15 C14 451 doub 28 n y C14 C23 451 sing 29 n y O16 C15 451 sing 30 n n C15 C26 451 sing 31 n y O16 C17 451 sing 32 n n C17 C18 451 sing 33 n n C17 H17 451 sing 34 n n C17 H17A 451 sing 35 n n O19 C18 451 sing 36 n n C18 H18 451 sing 37 n n C18 H18A 451 sing 38 n n C20 O19 451 sing 39 n n C21 C20 451 sing 40 n n C20 H20 451 sing 41 n n C20 H20A 451 sing 42 n n O22 C21 451 sing 43 n n C21 H21 451 sing 44 n n C21 H21A 451 sing 45 n n C23 C24 451 doub 46 n y C23 H23 451 sing 47 n n C25 C24 451 sing 48 n y C24 H24 451 sing 49 n n C26 C25 451 doub 50 n y C25 H25 451 sing 51 n n C26 H26 451 sing 52 n n N27 C28 451 sing 53 n n N27 HN27 451 sing 54 n n C30 C28 451 sing 55 n n C28 O29 451 doub 56 n n C30 H30 451 sing 57 n n C30 H30A 451 sing 58 n n C30 H30B 451 sing 59 n n # _atom_sites.entry_id 3FYX _atom_sites.fract_transf_matrix[1][1] 0.007379 _atom_sites.fract_transf_matrix[1][2] 0.00426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 451 A 1 341 1 451 451 . C 3 EPE A 1 342 1 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 451 . . . B 2 -71.889 21.988 -0.583 1 67.29 ? C1 451 341 A 1 HETATM 2 C C2 451 . . . B 2 -70.792 22.819 -0.864 1 67 ? C2 451 341 A 1 HETATM 3 C C3 451 . . . B 2 -69.521 22.424 -0.444 1 67.29 ? C3 451 341 A 1 HETATM 4 C C4 451 . . . B 2 -69.313 21.246 0.278 1 67.66 ? C4 451 341 A 1 HETATM 5 C C5 451 . . . B 2 -70.426 20.405 0.573 1 67.39 ? C5 451 341 A 1 HETATM 6 C C6 451 . . . B 2 -71.709 20.795 0.137 1 67.32 ? C6 451 341 A 1 HETATM 7 O O7 451 . . . B 2 -70.181 19.228 1.275 1 66.84 ? O7 451 341 A 1 HETATM 8 C C8 451 . . . B 2 -69.642 18.091 0.558 1 64.81 ? C8 451 341 A 1 HETATM 9 C C9 451 . . . B 2 -68.727 17.283 1.447 1 63.97 ? C9 451 341 A 1 HETATM 10 O O10 451 . . . B 2 -68.214 18.033 2.555 1 63.58 ? O10 451 341 A 1 HETATM 11 C C11 451 . . . B 2 -68.835 17.682 3.811 1 63.67 ? C11 451 341 A 1 HETATM 12 C C12 451 . . . B 2 -68.041 18.252 4.988 1 64.05 ? C12 451 341 A 1 HETATM 13 O O13 451 . . . B 2 -66.651 18.411 4.616 1 65.02 ? O13 451 341 A 1 HETATM 14 C C14 451 . . . B 2 -65.617 18.363 5.544 1 65.27 ? C14 451 341 A 1 HETATM 15 C C15 451 . . . B 2 -64.642 19.397 5.519 1 65.54 ? C15 451 341 A 1 HETATM 16 O O16 451 . . . B 2 -64.802 20.418 4.613 1 65.94 ? O16 451 341 A 1 HETATM 17 C C17 451 . . . B 2 -65.257 21.689 5.133 1 65.46 ? C17 451 341 A 1 HETATM 18 C C18 451 . . . B 2 -66.763 21.795 5.116 1 65.27 ? C18 451 341 A 1 HETATM 19 O O19 451 . . . B 2 -67.186 22.459 3.926 1 65.18 ? O19 451 341 A 1 HETATM 20 C C20 451 . . . B 2 -67.856 21.586 3.018 1 65.94 ? C20 451 341 A 1 HETATM 21 C C21 451 . . . B 2 -67.303 21.729 1.622 1 66.47 ? C21 451 341 A 1 HETATM 22 O O22 451 . . . B 2 -68.047 20.873 0.715 1 67.47 ? O22 451 341 A 1 HETATM 23 C C23 451 . . . B 2 -65.468 17.329 6.473 1 64.93 ? C23 451 341 A 1 HETATM 24 C C24 451 . . . B 2 -64.389 17.322 7.353 1 65.51 ? C24 451 341 A 1 HETATM 25 C C25 451 . . . B 2 -63.447 18.349 7.336 1 65.23 ? C25 451 341 A 1 HETATM 26 C C26 451 . . . B 2 -63.574 19.383 6.416 1 65.18 ? C26 451 341 A 1 HETATM 27 N N27 451 . . . B 2 -70.915 24.02 -1.6 1 66.44 ? N27 451 341 A 1 HETATM 28 C C28 451 . . . B 2 -70.302 25.212 -1.311 1 64.57 ? C28 451 341 A 1 HETATM 29 O O29 451 . . . B 2 -69.583 25.359 -0.325 1 64.8 ? O29 451 341 A 1 HETATM 30 C C30 451 . . . B 2 -70.521 26.394 -2.234 1 58.96 ? C30 451 341 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #