data_3FYX # _model_server_result.job_id UwPjWrDvCzSkPTJbhlZoDA _model_server_result.datetime_utc '2024-12-03 18:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":342}' # _entry.id 3FYX # _exptl.entry_id 3FYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FYX _cell.length_a 135.52 _cell.length_b 135.52 _cell.length_c 47.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -67.76 117.363763 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -135.52 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 16 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 16 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 451 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 451 _struct_conn.ptnr2_auth_seq_id 341 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.61 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 142 n n N1 C6 EPE sing 143 n n N1 C9 EPE sing 144 n n C2 C3 EPE sing 145 n n C2 H21 EPE sing 146 n n C2 H22 EPE sing 147 n n C3 N4 EPE sing 148 n n C3 H31 EPE sing 149 n n C3 H32 EPE sing 150 n n N4 C5 EPE sing 151 n n N4 C7 EPE sing 152 n n C5 C6 EPE sing 153 n n C5 H51 EPE sing 154 n n C5 H52 EPE sing 155 n n C6 H61 EPE sing 156 n n C6 H62 EPE sing 157 n n C7 C8 EPE sing 158 n n C7 H71 EPE sing 159 n n C7 H72 EPE sing 160 n n C8 O8 EPE sing 161 n n C8 H81 EPE sing 162 n n C8 H82 EPE sing 163 n n O8 HO8 EPE sing 164 n n C9 C10 EPE sing 165 n n C9 H91 EPE sing 166 n n C9 H92 EPE sing 167 n n C10 S EPE sing 168 n n C10 H101 EPE sing 169 n n C10 H102 EPE sing 170 n n S O1S EPE doub 171 n n S O2S EPE doub 172 n n S O3S EPE sing 173 n n O3S HOS3 EPE sing 174 n n # _atom_sites.entry_id 3FYX _atom_sites.fract_transf_matrix[1][1] 0.007379 _atom_sites.fract_transf_matrix[1][2] 0.00426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 451 A 1 341 1 451 451 . C 3 EPE A 1 342 1 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 -66.604 17.446 12.925 1 83.64 ? N1 EPE 342 A 1 HETATM 2 C C2 EPE . . . C 3 -67.131 17.24 11.558 1 82.99 ? C2 EPE 342 A 1 HETATM 3 C C3 EPE . . . C 3 -68.189 18.28 11.195 1 82.5 ? C3 EPE 342 A 1 HETATM 4 N N4 EPE . . . C 3 -69.326 18.26 12.101 1 82.32 ? N4 EPE 342 A 1 HETATM 5 C C5 EPE . . . C 3 -68.937 18.111 13.504 1 82.43 ? C5 EPE 342 A 1 HETATM 6 C C6 EPE . . . C 3 -67.448 18.309 13.775 1 82.85 ? C6 EPE 342 A 1 HETATM 7 C C7 EPE . . . C 3 -70.142 19.451 11.892 1 82.24 ? C7 EPE 342 A 1 HETATM 8 C C8 EPE . . . C 3 -71.6 19.254 12.309 1 82.23 ? C8 EPE 342 A 1 HETATM 9 O O8 EPE . . . C 3 -72.41 20.278 11.77 1 82.23 ? O8 EPE 342 A 1 HETATM 10 C C9 EPE . . . C 3 -65.189 17.871 12.961 1 85.62 ? C9 EPE 342 A 1 HETATM 11 C C10 EPE . . . C 3 -64.894 19.065 12.037 1 87.53 ? C10 EPE 342 A 1 HETATM 12 S S EPE . . . C 3 -63.738 20.32 12.687 1 89.37 ? S EPE 342 A 1 HETATM 13 O O1S EPE . . . C 3 -62.696 20.514 11.675 1 89.75 ? O1S EPE 342 A 1 HETATM 14 O O2S EPE . . . C 3 -63.139 19.908 13.963 1 89.44 ? O2S EPE 342 A 1 HETATM 15 O O3S EPE . . . C 3 -64.43 21.602 12.882 1 89.56 ? O3S EPE 342 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #