data_3FYZ # _model_server_result.job_id GncKS9t-010zxzPA_BZGkg _model_server_result.datetime_utc '2025-06-29 10:40:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3FYZ # _exptl.entry_id 3FYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R)-2-[(7-aminocarbonyl-2-methanoyl-indolizin-3-yl)amino]-4-aminocarbonyloxy-3-methyl-3-sulfino-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FYZ _cell.length_a 102.76 _cell.length_b 102.76 _cell.length_c 83.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 52 A PHE 83 1_555 A N KCX 53 A KCX 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C KCX 53 A KCX 84 1_555 A N MET 54 A MET 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C16 H18 N4 O8 S' _chem_comp.formula_weight 426.401 _chem_comp.id MXC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R)-2-[(7-aminocarbonyl-2-methanoyl-indolizin-3-yl)amino]-4-aminocarbonyloxy-3-methyl-3-sulfino-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MXC doub 250 n y C1 C8 MXC sing 251 n y C1 C9 MXC sing 252 n n C2 C3 MXC sing 253 n y C3 C4 MXC doub 254 n y C3 N1 MXC sing 255 n y C4 C5 MXC sing 256 n y C5 C6 MXC doub 257 n y C5 C10 MXC sing 258 n n C6 N1 MXC sing 259 n y C6 N3 MXC sing 260 n n C7 C8 MXC doub 261 n y C7 N1 MXC sing 262 n y C9 N2 MXC sing 263 n n C9 O2 MXC doub 264 n n C10 O1 MXC doub 265 n n C11 C12 MXC sing 266 n n C11 C13 MXC sing 267 n n C11 N3 MXC sing 268 n n C12 O3 MXC doub 269 n n C12 O4 MXC sing 270 n n C13 C14 MXC sing 271 n n C13 C15 MXC sing 272 n n C13 S1 MXC sing 273 n n C15 O7 MXC sing 274 n n C16 N4 MXC sing 275 n n C16 O7 MXC sing 276 n n C16 O8 MXC doub 277 n n O5 S1 MXC doub 278 n n O6 S1 MXC sing 279 n n C2 H2 MXC sing 280 n n C4 H4 MXC sing 281 n n C7 H7 MXC sing 282 n n C8 H8 MXC sing 283 n n C10 H10 MXC sing 284 n n C11 H11 MXC sing 285 n n C14 H14 MXC sing 286 n n C14 H14A MXC sing 287 n n C14 H14B MXC sing 288 n n C15 H15 MXC sing 289 n n C15 H15A MXC sing 290 n n N2 HN2 MXC sing 291 n n N2 HN2A MXC sing 292 n n N3 HN3 MXC sing 293 n n N4 HN4 MXC sing 294 n n N4 HN4A MXC sing 295 n n O4 HO4 MXC sing 296 n n O6 HO6 MXC sing 297 n n # _atom_sites.entry_id 3FYZ _atom_sites.fract_transf_matrix[1][1] 0.009731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXC A 1 300 300 MXC MXC . C 3 PG4 A 1 1 1 PG4 6PE . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 31 31 HOH HOH . D 4 HOH A 30 276 1 HOH HOH . D 4 HOH A 31 277 32 HOH HOH . D 4 HOH A 32 278 33 HOH HOH . D 4 HOH A 33 279 34 HOH HOH . D 4 HOH A 34 280 35 HOH HOH . D 4 HOH A 35 281 36 HOH HOH . D 4 HOH A 36 282 37 HOH HOH . D 4 HOH A 37 283 38 HOH HOH . D 4 HOH A 38 284 39 HOH HOH . D 4 HOH A 39 285 40 HOH HOH . D 4 HOH A 40 286 41 HOH HOH . D 4 HOH A 41 287 42 HOH HOH . D 4 HOH A 42 288 43 HOH HOH . D 4 HOH A 43 289 44 HOH HOH . D 4 HOH A 44 290 45 HOH HOH . D 4 HOH A 45 291 46 HOH HOH . D 4 HOH A 46 292 47 HOH HOH . D 4 HOH A 47 293 48 HOH HOH . D 4 HOH A 48 294 49 HOH HOH . D 4 HOH A 49 295 50 HOH HOH . D 4 HOH A 50 296 51 HOH HOH . D 4 HOH A 51 297 52 HOH HOH . D 4 HOH A 52 298 53 HOH HOH . D 4 HOH A 53 299 54 HOH HOH . D 4 HOH A 54 301 55 HOH HOH . D 4 HOH A 55 302 56 HOH HOH . D 4 HOH A 56 303 57 HOH HOH . D 4 HOH A 57 304 58 HOH HOH . D 4 HOH A 58 305 59 HOH HOH . D 4 HOH A 59 306 60 HOH HOH . D 4 HOH A 60 307 61 HOH HOH . D 4 HOH A 61 308 62 HOH HOH . D 4 HOH A 62 309 63 HOH HOH . D 4 HOH A 63 310 64 HOH HOH . D 4 HOH A 64 311 65 HOH HOH . D 4 HOH A 65 312 66 HOH HOH . D 4 HOH A 66 313 67 HOH HOH . D 4 HOH A 67 314 68 HOH HOH . D 4 HOH A 68 315 69 HOH HOH . D 4 HOH A 69 316 70 HOH HOH . D 4 HOH A 70 317 71 HOH HOH . D 4 HOH A 71 318 72 HOH HOH . D 4 HOH A 72 319 73 HOH HOH . D 4 HOH A 73 320 74 HOH HOH . D 4 HOH A 74 321 75 HOH HOH . D 4 HOH A 75 322 76 HOH HOH . D 4 HOH A 76 323 77 HOH HOH . D 4 HOH A 77 324 78 HOH HOH . D 4 HOH A 78 325 79 HOH HOH . D 4 HOH A 79 326 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXC . . . B 2 107.293 32.84 26.946 1 51.34 ? C1 MXC 300 A 1 HETATM 2 C C2 MXC . . . B 2 106.645 31.566 26.996 1 49.83 ? C2 MXC 300 A 1 HETATM 3 C C3 MXC . . . B 2 105.444 31.466 27.763 1 47.96 ? C3 MXC 300 A 1 HETATM 4 C C4 MXC . . . B 2 104.569 30.343 28.018 1 46.99 ? C4 MXC 300 A 1 HETATM 5 C C5 MXC . . . B 2 103.577 30.785 28.83 1 45.3 ? C5 MXC 300 A 1 HETATM 6 C C6 MXC . . . B 2 103.756 32.263 29.151 1 45.42 ? C6 MXC 300 A 1 HETATM 7 C C7 MXC . . . B 2 105.567 33.849 28.386 1 48.39 ? C7 MXC 300 A 1 HETATM 8 C C8 MXC . . . B 2 106.751 33.981 27.638 1 50.13 ? C8 MXC 300 A 1 HETATM 9 C C9 MXC . . . B 2 108.578 32.987 26.163 1 51.66 ? C9 MXC 300 A 1 HETATM 10 C C10 MXC . . . B 2 102.465 29.914 29.346 1 43.14 ? C10 MXC 300 A 1 HETATM 11 C C11 MXC . . . B 2 103.02 33.517 31.369 1 47.42 ? C11 MXC 300 A 1 HETATM 12 C C12 MXC . . . B 2 103.847 34.804 31.427 1 46.4 ? C12 MXC 300 A 1 HETATM 13 C C13 MXC . . . B 2 101.587 33.601 32.004 1 49.3 ? C13 MXC 300 A 1 HETATM 14 C C14 MXC . . . B 2 100.901 34.946 31.609 1 49.77 ? C14 MXC 300 A 1 HETATM 15 C C15 MXC . . . B 2 101.724 33.465 33.542 1 51.41 ? C15 MXC 300 A 1 HETATM 16 C C16 MXC . . . B 2 102.347 34.724 35.443 1 58.62 ? C16 MXC 300 A 1 HETATM 17 N N1 MXC . . . B 2 104.994 32.595 28.401 1 47.1 ? N1 MXC 300 A 1 HETATM 18 N N2 MXC . . . B 2 109.091 34.255 26.201 1 52.46 ? N2 MXC 300 A 1 HETATM 19 N N3 MXC . . . B 2 102.948 33.054 29.963 1 46.24 ? N3 MXC 300 A 1 HETATM 20 N N4 MXC . . . B 2 101.5 33.954 36.215 1 58.75 ? N4 MXC 300 A 1 HETATM 21 O O1 MXC . . . B 2 101.223 30.367 28.814 1 50.16 ? O1 MXC 300 A 1 HETATM 22 O O2 MXC . . . B 2 109.154 32.103 25.55 1 50.48 ? O2 MXC 300 A 1 HETATM 23 O O3 MXC . . . B 2 104.34 35.353 30.445 1 44.88 ? O3 MXC 300 A 1 HETATM 24 O O4 MXC . . . B 2 104.097 35.487 32.733 1 47.3 ? O4 MXC 300 A 1 HETATM 25 O O5 MXC . . . B 2 99.178 32.417 32.089 1 45.3 ? O5 MXC 300 A 1 HETATM 26 O O6 MXC . . . B 2 101.139 30.786 31.828 1 48.82 ? O6 MXC 300 A 1 HETATM 27 O O7 MXC . . . B 2 102.164 34.671 34.104 1 56.61 ? O7 MXC 300 A 1 HETATM 28 O O8 MXC . . . B 2 103.201 35.417 35.956 1 58.18 ? O8 MXC 300 A 1 HETATM 29 S S1 MXC . . . B 2 100.499 32.269 31.415 1 49.55 ? S1 MXC 300 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 1372 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 29 #