data_3FZ1 # _model_server_result.job_id yrXVaXx8P0kilPdgv_53Tg _model_server_result.datetime_utc '2024-12-21 15:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 3FZ1 # _exptl.entry_id 3FZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-(aminomethyl)-9-methoxy-1,2,3,4-tetrahydro-5H-[1]benzothieno[3,2-e][1,4]diazepin-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FZ1 _cell.length_a 53.717 _cell.length_b 71.709 _cell.length_c 72.242 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H15 N3 O2 S' _chem_comp.formula_weight 277.342 _chem_comp.id B98 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-(aminomethyl)-9-methoxy-1,2,3,4-tetrahydro-5H-[1]benzothieno[3,2-e][1,4]diazepin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 B98 doub 70 n y C4 C3 B98 sing 71 n y C5 C6 B98 sing 72 n y C19 C18 B98 sing 73 n y C19 C3 B98 doub 74 n y C18 C17 B98 sing 75 n y C18 C6 B98 doub 76 n y C17 C8 B98 doub 77 n y C17 N16 B98 sing 78 n n C3 O2 B98 sing 79 n n C6 S7 B98 sing 80 n y C8 C9 B98 sing 81 n n C8 S7 B98 sing 82 n y C9 N11 B98 sing 83 n n C9 O10 B98 doub 84 n n C15 C12 B98 sing 85 n n C15 N16 B98 sing 86 n n C12 C13 B98 sing 87 n n C12 N11 B98 sing 88 n n C1 O2 B98 sing 89 n n C13 N14 B98 sing 90 n n C4 H4 B98 sing 91 n n C5 H5 B98 sing 92 n n C19 H19 B98 sing 93 n n C15 H15 B98 sing 94 n n C15 H15A B98 sing 95 n n C12 H12 B98 sing 96 n n C1 H1 B98 sing 97 n n C1 H1A B98 sing 98 n n C1 H1B B98 sing 99 n n C13 H13 B98 sing 100 n n C13 H13A B98 sing 101 n n N16 HN16 B98 sing 102 n n N11 HN11 B98 sing 103 n n N14 HN14 B98 sing 104 n n N14 HN1A B98 sing 105 n n # _atom_sites.entry_id 3FZ1 _atom_sites.fract_transf_matrix[1][1] 0.018616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B98 A 1 299 299 B98 B98 . C 3 HOH A 1 300 1 HOH HOH . C 3 HOH A 2 301 2 HOH HOH . C 3 HOH A 3 302 3 HOH HOH . C 3 HOH A 4 303 4 HOH HOH . C 3 HOH A 5 304 5 HOH HOH . C 3 HOH A 6 305 6 HOH HOH . C 3 HOH A 7 306 7 HOH HOH . C 3 HOH A 8 307 8 HOH HOH . C 3 HOH A 9 308 9 HOH HOH . C 3 HOH A 10 309 10 HOH HOH . C 3 HOH A 11 310 11 HOH HOH . C 3 HOH A 12 311 12 HOH HOH . C 3 HOH A 13 312 13 HOH HOH . C 3 HOH A 14 313 14 HOH HOH . C 3 HOH A 15 314 15 HOH HOH . C 3 HOH A 16 315 16 HOH HOH . C 3 HOH A 17 316 17 HOH HOH . C 3 HOH A 18 317 18 HOH HOH . C 3 HOH A 19 318 19 HOH HOH . C 3 HOH A 20 319 20 HOH HOH . C 3 HOH A 21 320 21 HOH HOH . C 3 HOH A 22 321 22 HOH HOH . C 3 HOH A 23 322 23 HOH HOH . C 3 HOH A 24 323 24 HOH HOH . C 3 HOH A 25 324 25 HOH HOH . C 3 HOH A 26 325 26 HOH HOH . C 3 HOH A 27 326 27 HOH HOH . C 3 HOH A 28 327 28 HOH HOH . C 3 HOH A 29 328 29 HOH HOH . C 3 HOH A 30 329 30 HOH HOH . C 3 HOH A 31 330 31 HOH HOH . C 3 HOH A 32 331 32 HOH HOH . C 3 HOH A 33 332 33 HOH HOH . C 3 HOH A 34 333 34 HOH HOH . C 3 HOH A 35 334 36 HOH HOH . C 3 HOH A 36 335 38 HOH HOH . C 3 HOH A 37 336 39 HOH HOH . C 3 HOH A 38 337 40 HOH HOH . C 3 HOH A 39 338 41 HOH HOH . C 3 HOH A 40 339 42 HOH HOH . C 3 HOH A 41 340 43 HOH HOH . C 3 HOH A 42 341 46 HOH HOH . C 3 HOH A 43 342 47 HOH HOH . C 3 HOH A 44 343 48 HOH HOH . C 3 HOH A 45 344 49 HOH HOH . C 3 HOH A 46 345 50 HOH HOH . C 3 HOH A 47 346 51 HOH HOH . C 3 HOH A 48 347 52 HOH HOH . C 3 HOH A 49 348 53 HOH HOH . C 3 HOH A 50 349 55 HOH HOH . C 3 HOH A 51 350 57 HOH HOH . C 3 HOH A 52 351 58 HOH HOH . C 3 HOH A 53 352 59 HOH HOH . C 3 HOH A 54 353 60 HOH HOH . C 3 HOH A 55 354 61 HOH HOH . C 3 HOH A 56 355 62 HOH HOH . C 3 HOH A 57 356 63 HOH HOH . C 3 HOH A 58 357 64 HOH HOH . C 3 HOH A 59 358 68 HOH HOH . C 3 HOH A 60 359 69 HOH HOH . C 3 HOH A 61 360 70 HOH HOH . C 3 HOH A 62 361 71 HOH HOH . C 3 HOH A 63 362 72 HOH HOH . C 3 HOH A 64 363 73 HOH HOH . C 3 HOH A 65 364 74 HOH HOH . C 3 HOH A 66 365 76 HOH HOH . C 3 HOH A 67 366 77 HOH HOH . C 3 HOH A 68 367 78 HOH HOH . C 3 HOH A 69 368 79 HOH HOH . C 3 HOH A 70 369 80 HOH HOH . C 3 HOH A 71 370 81 HOH HOH . C 3 HOH A 72 371 82 HOH HOH . C 3 HOH A 73 372 83 HOH HOH . C 3 HOH A 74 373 84 HOH HOH . C 3 HOH A 75 374 85 HOH HOH . C 3 HOH A 76 375 86 HOH HOH . C 3 HOH A 77 376 87 HOH HOH . C 3 HOH A 78 377 88 HOH HOH . C 3 HOH A 79 378 90 HOH HOH . C 3 HOH A 80 379 92 HOH HOH . C 3 HOH A 81 380 93 HOH HOH . C 3 HOH A 82 381 95 HOH HOH . C 3 HOH A 83 382 96 HOH HOH . C 3 HOH A 84 383 99 HOH HOH . C 3 HOH A 85 384 100 HOH HOH . C 3 HOH A 86 385 101 HOH HOH . C 3 HOH A 87 386 102 HOH HOH . C 3 HOH A 88 387 104 HOH HOH . C 3 HOH A 89 388 105 HOH HOH . C 3 HOH A 90 389 106 HOH HOH . C 3 HOH A 91 390 107 HOH HOH . C 3 HOH A 92 391 110 HOH HOH . C 3 HOH A 93 392 111 HOH HOH . C 3 HOH A 94 393 113 HOH HOH . C 3 HOH A 95 394 115 HOH HOH . C 3 HOH A 96 395 121 HOH HOH . C 3 HOH A 97 396 122 HOH HOH . C 3 HOH A 98 397 123 HOH HOH . C 3 HOH A 99 398 124 HOH HOH . C 3 HOH A 100 399 126 HOH HOH . C 3 HOH A 101 400 129 HOH HOH . C 3 HOH A 102 401 130 HOH HOH . C 3 HOH A 103 402 131 HOH HOH . C 3 HOH A 104 403 134 HOH HOH . C 3 HOH A 105 404 135 HOH HOH . C 3 HOH A 106 405 137 HOH HOH . C 3 HOH A 107 406 139 HOH HOH . C 3 HOH A 108 407 140 HOH HOH . C 3 HOH A 109 408 142 HOH HOH . C 3 HOH A 110 409 144 HOH HOH . C 3 HOH A 111 410 155 HOH HOH . C 3 HOH A 112 411 159 HOH HOH . C 3 HOH A 113 412 161 HOH HOH . C 3 HOH A 114 413 162 HOH HOH . C 3 HOH A 115 414 165 HOH HOH . C 3 HOH A 116 415 167 HOH HOH . C 3 HOH A 117 416 168 HOH HOH . C 3 HOH A 118 417 169 HOH HOH . C 3 HOH A 119 418 170 HOH HOH . C 3 HOH A 120 419 171 HOH HOH . C 3 HOH A 121 420 176 HOH HOH . C 3 HOH A 122 421 177 HOH HOH . C 3 HOH A 123 422 178 HOH HOH . C 3 HOH A 124 423 180 HOH HOH . C 3 HOH A 125 424 181 HOH HOH . C 3 HOH A 126 425 183 HOH HOH . C 3 HOH A 127 426 184 HOH HOH . C 3 HOH A 128 427 186 HOH HOH . C 3 HOH A 129 428 189 HOH HOH . C 3 HOH A 130 429 190 HOH HOH . C 3 HOH A 131 430 191 HOH HOH . C 3 HOH A 132 431 199 HOH HOH . C 3 HOH A 133 432 200 HOH HOH . C 3 HOH A 134 433 201 HOH HOH . C 3 HOH A 135 434 203 HOH HOH . C 3 HOH A 136 435 209 HOH HOH . C 3 HOH A 137 436 210 HOH HOH . C 3 HOH A 138 437 215 HOH HOH . C 3 HOH A 139 438 217 HOH HOH . C 3 HOH A 140 439 218 HOH HOH . C 3 HOH A 141 440 219 HOH HOH . C 3 HOH A 142 441 220 HOH HOH . C 3 HOH A 143 442 221 HOH HOH . C 3 HOH A 144 443 223 HOH HOH . C 3 HOH A 145 444 224 HOH HOH . C 3 HOH A 146 445 226 HOH HOH . C 3 HOH A 147 446 227 HOH HOH . C 3 HOH A 148 447 228 HOH HOH . C 3 HOH A 149 448 229 HOH HOH . C 3 HOH A 150 449 230 HOH HOH . C 3 HOH A 151 450 232 HOH HOH . C 3 HOH A 152 451 233 HOH HOH . C 3 HOH A 153 452 234 HOH HOH . C 3 HOH A 154 453 1 HOH HOH . C 3 HOH A 155 454 2 HOH HOH . C 3 HOH A 156 455 3 HOH HOH . C 3 HOH A 157 456 4 HOH HOH . C 3 HOH A 158 457 5 HOH HOH . C 3 HOH A 159 458 6 HOH HOH . C 3 HOH A 160 459 7 HOH HOH . C 3 HOH A 161 460 10 HOH HOH . C 3 HOH A 162 461 11 HOH HOH . C 3 HOH A 163 462 12 HOH HOH . C 3 HOH A 164 463 14 HOH HOH . C 3 HOH A 165 464 16 HOH HOH . C 3 HOH A 166 465 17 HOH HOH . C 3 HOH A 167 466 19 HOH HOH . C 3 HOH A 168 467 28 HOH HOH . C 3 HOH A 169 468 29 HOH HOH . C 3 HOH A 170 469 30 HOH HOH . C 3 HOH A 171 470 33 HOH HOH . C 3 HOH A 172 471 35 HOH HOH . C 3 HOH A 173 472 39 HOH HOH . C 3 HOH A 174 473 44 HOH HOH . C 3 HOH A 175 474 47 HOH HOH . C 3 HOH A 176 475 49 HOH HOH . C 3 HOH A 177 476 50 HOH HOH . C 3 HOH A 178 477 54 HOH HOH . C 3 HOH A 179 478 62 HOH HOH . C 3 HOH A 180 479 63 HOH HOH . C 3 HOH A 181 480 65 HOH HOH . C 3 HOH A 182 481 69 HOH HOH . C 3 HOH A 183 482 70 HOH HOH . C 3 HOH A 184 483 73 HOH HOH . C 3 HOH A 185 484 76 HOH HOH . C 3 HOH A 186 485 87 HOH HOH . C 3 HOH A 187 486 109 HOH HOH . C 3 HOH A 188 487 110 HOH HOH . C 3 HOH A 189 488 116 HOH HOH . C 3 HOH A 190 489 118 HOH HOH . C 3 HOH A 191 490 133 HOH HOH . C 3 HOH A 192 491 134 HOH HOH . C 3 HOH A 193 492 137 HOH HOH . C 3 HOH A 194 493 141 HOH HOH . C 3 HOH A 195 494 142 HOH HOH . C 3 HOH A 196 495 1 HOH HOH . C 3 HOH A 197 496 4 HOH HOH . C 3 HOH A 198 497 11 HOH HOH . C 3 HOH A 199 498 13 HOH HOH . C 3 HOH A 200 499 25 HOH HOH . C 3 HOH A 201 500 27 HOH HOH . C 3 HOH A 202 501 58 HOH HOH . C 3 HOH A 203 502 115 HOH HOH . C 3 HOH A 204 503 119 HOH HOH . C 3 HOH A 205 504 120 HOH HOH . C 3 HOH A 206 505 122 HOH HOH . C 3 HOH A 207 506 123 HOH HOH . C 3 HOH A 208 507 124 HOH HOH . C 3 HOH A 209 508 128 HOH HOH . C 3 HOH A 210 509 130 HOH HOH . C 3 HOH A 211 510 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B98 . . . B 2 -0.317 32.198 8.362 1 36.2 ? C4 B98 299 A 1 HETATM 2 C C5 B98 . . . B 2 -1.44 32.024 9.138 1 35.73 ? C5 B98 299 A 1 HETATM 3 C C19 B98 . . . B 2 0.255 29.871 8.567 1 35.87 ? C19 B98 299 A 1 HETATM 4 C C18 B98 . . . B 2 -0.877 29.674 9.354 1 36.15 ? C18 B98 299 A 1 HETATM 5 C C17 B98 . . . B 2 -1.376 28.48 9.967 1 35.68 ? C17 B98 299 A 1 HETATM 6 C C3 B98 . . . B 2 0.51 31.14 8.08 1 37.4 ? C3 B98 299 A 1 HETATM 7 C C6 B98 . . . B 2 -1.697 30.763 9.613 1 35.49 ? C6 B98 299 A 1 HETATM 8 C C8 B98 . . . B 2 -2.548 28.646 10.687 1 36.41 ? C8 B98 299 A 1 HETATM 9 C C9 B98 . . . B 2 -3.418 27.778 11.452 1 37.3 ? C9 B98 299 A 1 HETATM 10 C C15 B98 . . . B 2 -1.319 26.048 10.161 1 35.85 ? C15 B98 299 A 1 HETATM 11 C C12 B98 . . . B 2 -1.701 25.958 11.622 1 35.54 ? C12 B98 299 A 1 HETATM 12 C C1 B98 . . . B 2 2.014 30.165 6.717 1 37.42 ? C1 B98 299 A 1 HETATM 13 C C13 B98 . . . B 2 -0.663 26.389 12.634 1 35.06 ? C13 B98 299 A 1 HETATM 14 N N16 B98 . . . B 2 -0.697 27.312 9.815 1 36.23 ? N16 B98 299 A 1 HETATM 15 N N11 B98 . . . B 2 -2.958 26.57 11.909 1 36.27 ? N11 B98 299 A 1 HETATM 16 N N14 B98 . . . B 2 -1.313 26.328 13.974 1 33.33 ? N14 B98 299 A 1 HETATM 17 O O10 B98 . . . B 2 -4.578 28.084 11.697 1 38.19 ? O10 B98 299 A 1 HETATM 18 O O2 B98 . . . B 2 1.623 31.406 7.286 1 37.61 ? O2 B98 299 A 1 HETATM 19 S S7 B98 . . . B 2 -3.031 30.288 10.595 1 38 ? S7 B98 299 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #