data_3FZC # _model_server_result.job_id 6uodErl9KuIyWm6NPiUIKg _model_server_result.datetime_utc '2024-11-16 02:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3FZC # _exptl.entry_id 3FZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.444 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FZC _cell.length_a 102.52 _cell.length_b 102.52 _cell.length_c 84.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 52 A PHE 83 1_555 A N KCX 53 A KCX 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C KCX 53 A KCX 84 1_555 A N MET 54 A MET 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C17 H22 N4 O7 S' _chem_comp.formula_weight 426.444 _chem_comp.id MXF _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'penam sulfone SA3-53, open form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MXF doub 250 n y C1 C8 MXF sing 251 n y C2 C3 MXF sing 252 n y C3 C4 MXF doub 253 n y C3 N1 MXF sing 254 n y C4 C5 MXF sing 255 n y C5 C6 MXF doub 256 n y C5 C10 MXF sing 257 n n C6 N1 MXF sing 258 n y C6 N3 MXF sing 259 n n C7 C8 MXF doub 260 n y C7 N1 MXF sing 261 n y C10 O1 MXF doub 262 n n C11 C12 MXF sing 263 n n C11 C13 MXF sing 264 n n C11 N3 MXF sing 265 n n C12 O3 MXF doub 266 n n C12 O4 MXF sing 267 n n C13 C14 MXF sing 268 n n C13 C15 MXF sing 269 n n C13 S1 MXF sing 270 n n C15 O7 MXF sing 271 n n C16 N4 MXF sing 272 n n C16 O7 MXF sing 273 n n C16 O8 MXF doub 274 n n N4 C17 MXF sing 275 n n O5 S1 MXF doub 276 n n O6 S1 MXF sing 277 n n C17 C18 MXF sing 278 n n C18 N5 MXF sing 279 n n C1 H1 MXF sing 280 n n C2 H2 MXF sing 281 n n C4 H4 MXF sing 282 n n C7 H7 MXF sing 283 n n C8 H8 MXF sing 284 n n C10 H10 MXF sing 285 n n C11 H11 MXF sing 286 n n C14 H14 MXF sing 287 n n C14 H14A MXF sing 288 n n C14 H14B MXF sing 289 n n C15 H15 MXF sing 290 n n C15 H15A MXF sing 291 n n N3 HN3 MXF sing 292 n n N4 HN4 MXF sing 293 n n O4 HO4 MXF sing 294 n n O6 HO6 MXF sing 295 n n C17 H17 MXF sing 296 n n C17 H17A MXF sing 297 n n C18 H18 MXF sing 298 n n C18 H18A MXF sing 299 n n N5 HN5 MXF sing 300 n n N5 HN5A MXF sing 301 n n # _atom_sites.entry_id 3FZC _atom_sites.fract_transf_matrix[1][1] 0.009754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MXF A 1 300 300 MXF MXG . C 3 PG4 A 1 1 1 PG4 PG4 . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 5 5 HOH HOH . D 4 HOH A 5 6 6 HOH HOH . D 4 HOH A 6 7 7 HOH HOH . D 4 HOH A 7 8 8 HOH HOH . D 4 HOH A 8 9 9 HOH HOH . D 4 HOH A 9 10 10 HOH HOH . D 4 HOH A 10 11 11 HOH HOH . D 4 HOH A 11 12 12 HOH HOH . D 4 HOH A 12 13 13 HOH HOH . D 4 HOH A 13 14 14 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 276 1 HOH HOH . D 4 HOH A 32 277 32 HOH HOH . D 4 HOH A 33 278 33 HOH HOH . D 4 HOH A 34 279 34 HOH HOH . D 4 HOH A 35 280 35 HOH HOH . D 4 HOH A 36 281 36 HOH HOH . D 4 HOH A 37 282 37 HOH HOH . D 4 HOH A 38 283 38 HOH HOH . D 4 HOH A 39 284 39 HOH HOH . D 4 HOH A 40 285 40 HOH HOH . D 4 HOH A 41 286 41 HOH HOH . D 4 HOH A 42 287 42 HOH HOH . D 4 HOH A 43 288 43 HOH HOH . D 4 HOH A 44 289 44 HOH HOH . D 4 HOH A 45 290 45 HOH HOH . D 4 HOH A 46 291 46 HOH HOH . D 4 HOH A 47 292 47 HOH HOH . D 4 HOH A 48 293 48 HOH HOH . D 4 HOH A 49 294 49 HOH HOH . D 4 HOH A 50 295 50 HOH HOH . D 4 HOH A 51 296 51 HOH HOH . D 4 HOH A 52 297 52 HOH HOH . D 4 HOH A 53 298 53 HOH HOH . D 4 HOH A 54 299 54 HOH HOH . D 4 HOH A 55 301 55 HOH HOH . D 4 HOH A 56 302 56 HOH HOH . D 4 HOH A 57 303 57 HOH HOH . D 4 HOH A 58 304 58 HOH HOH . D 4 HOH A 59 305 59 HOH HOH . D 4 HOH A 60 306 60 HOH HOH . D 4 HOH A 61 307 61 HOH HOH . D 4 HOH A 62 308 62 HOH HOH . D 4 HOH A 63 309 63 HOH HOH . D 4 HOH A 64 310 64 HOH HOH . D 4 HOH A 65 311 65 HOH HOH . D 4 HOH A 66 312 66 HOH HOH . D 4 HOH A 67 313 67 HOH HOH . D 4 HOH A 68 314 68 HOH HOH . D 4 HOH A 69 315 69 HOH HOH . D 4 HOH A 70 316 70 HOH HOH . D 4 HOH A 71 317 71 HOH HOH . D 4 HOH A 72 318 72 HOH HOH . D 4 HOH A 73 319 73 HOH HOH . D 4 HOH A 74 320 74 HOH HOH . D 4 HOH A 75 321 75 HOH HOH . D 4 HOH A 76 322 76 HOH HOH . D 4 HOH A 77 323 77 HOH HOH . D 4 HOH A 78 324 78 HOH HOH . D 4 HOH A 79 325 79 HOH HOH . D 4 HOH A 80 326 80 HOH HOH . D 4 HOH A 81 327 81 HOH HOH . D 4 HOH A 82 328 82 HOH HOH . D 4 HOH A 83 329 83 HOH HOH . D 4 HOH A 84 330 84 HOH HOH . D 4 HOH A 85 331 85 HOH HOH . D 4 HOH A 86 332 86 HOH HOH . D 4 HOH A 87 333 87 HOH HOH . D 4 HOH A 88 334 88 HOH HOH . D 4 HOH A 89 335 89 HOH HOH . D 4 HOH A 90 336 90 HOH HOH . D 4 HOH A 91 337 91 HOH HOH . D 4 HOH A 92 338 92 HOH HOH . D 4 HOH A 93 339 93 HOH HOH . D 4 HOH A 94 340 94 HOH HOH . D 4 HOH A 95 341 95 HOH HOH . D 4 HOH A 96 342 96 HOH HOH . D 4 HOH A 97 343 97 HOH HOH . D 4 HOH A 98 344 98 HOH HOH . D 4 HOH A 99 345 99 HOH HOH . D 4 HOH A 100 346 100 HOH HOH . D 4 HOH A 101 347 101 HOH HOH . D 4 HOH A 102 348 102 HOH HOH . D 4 HOH A 103 349 103 HOH HOH . D 4 HOH A 104 350 104 HOH HOH . D 4 HOH A 105 351 105 HOH HOH . D 4 HOH A 106 352 106 HOH HOH . D 4 HOH A 107 353 107 HOH HOH . D 4 HOH A 108 354 108 HOH HOH . D 4 HOH A 109 355 109 HOH HOH . D 4 HOH A 110 356 110 HOH HOH . D 4 HOH A 111 357 111 HOH HOH . D 4 HOH A 112 358 112 HOH HOH . D 4 HOH A 113 359 113 HOH HOH . D 4 HOH A 114 360 114 HOH HOH . D 4 HOH A 115 361 115 HOH HOH . D 4 HOH A 116 362 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MXF . . . B 2 107.237 32.541 26.776 1 61.22 ? C1 MXF 300 A 1 HETATM 2 C C2 MXF . . . B 2 106.534 31.267 26.847 1 60.73 ? C2 MXF 300 A 1 HETATM 3 C C3 MXF . . . B 2 105.352 31.193 27.702 1 60.45 ? C3 MXF 300 A 1 HETATM 4 C C4 MXF . . . B 2 104.445 30.097 27.992 1 58.7 ? C4 MXF 300 A 1 HETATM 5 C C5 MXF . . . B 2 103.507 30.556 28.861 1 57.01 ? C5 MXF 300 A 1 HETATM 6 C C6 MXF . . . B 2 103.745 32.023 29.203 1 60.04 ? C6 MXF 300 A 1 HETATM 7 C C7 MXF . . . B 2 105.61 33.595 28.364 1 60.69 ? C7 MXF 300 A 1 HETATM 8 C C8 MXF . . . B 2 106.778 33.705 27.533 1 61.08 ? C8 MXF 300 A 1 HETATM 9 C C10 MXF . . . B 2 102.385 29.709 29.402 1 51.02 ? C10 MXF 300 A 1 HETATM 10 C C11 MXF . . . B 2 102.992 33.148 31.497 1 66.99 ? C11 MXF 300 A 1 HETATM 11 C C12 MXF . . . B 2 103.815 34.439 31.644 1 67.32 ? C12 MXF 300 A 1 HETATM 12 C C13 MXF . . . B 2 101.506 33.242 32.047 1 69.64 ? C13 MXF 300 A 1 HETATM 13 C C14 MXF . . . B 2 100.801 34.524 31.475 1 70.55 ? C14 MXF 300 A 1 HETATM 14 C C15 MXF . . . B 2 101.585 33.221 33.611 1 70.64 ? C15 MXF 300 A 1 HETATM 15 C C16 MXF . . . B 2 101.328 35.327 34.724 1 72.95 ? C16 MXF 300 A 1 HETATM 16 N N1 MXF . . . B 2 104.973 32.341 28.395 1 60.34 ? N1 MXF 300 A 1 HETATM 17 N N3 MXF . . . B 2 102.971 32.808 30.057 1 64.1 ? N3 MXF 300 A 1 HETATM 18 N N4 MXF . . . B 2 102.574 35.218 35.347 1 71.59 ? N4 MXF 300 A 1 HETATM 19 O O1 MXF . . . B 2 101.209 29.954 28.625 1 56.23 ? O1 MXF 300 A 1 HETATM 20 O O3 MXF . . . B 2 104.321 35.037 30.701 1 66.79 ? O3 MXF 300 A 1 HETATM 21 O O4 MXF . . . B 2 104.04 35.06 32.992 1 66.93 ? O4 MXF 300 A 1 HETATM 22 O O5 MXF . . . B 2 99.1 32.059 32.119 1 70.62 ? O5 MXF 300 A 1 HETATM 23 O O6 MXF . . . B 2 101.097 30.408 32.104 1 72.12 ? O6 MXF 300 A 1 HETATM 24 O O7 MXF . . . B 2 100.762 34.182 34.239 1 72.49 ? O7 MXF 300 A 1 HETATM 25 O O8 MXF . . . B 2 100.777 36.408 34.598 1 72.37 ? O8 MXF 300 A 1 HETATM 26 S S1 MXF . . . B 2 100.455 31.847 31.537 1 72.6 ? S1 MXF 300 A 1 HETATM 27 C C17 MXF . . . B 2 102.686 34.751 36.654 1 72.16 ? C17 MXF 300 A 1 HETATM 28 C C18 MXF . . . B 2 103.335 34.122 37.892 1 72.69 ? C18 MXF 300 A 1 HETATM 29 N N5 MXF . . . B 2 102.969 34.83 39.165 1 73.09 ? N5 MXF 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #