data_3FZP
#
_model_server_result.job_id            OZai-piRIM255gzAiGFHKw 
_model_server_result.datetime_utc      '2024-12-02 13:44:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":999}' 
#
_entry.id    3FZP 
#
_exptl.entry_id    3FZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.45 
_cell.angle_gamma         90 
_cell.entry_id            3FZP 
_cell.length_a            36.946 
_cell.length_b            92.663 
_cell.length_c            42.671 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     3FZP 
_atom_sites.fract_transf_matrix[1][1]    0.027067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010792 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AGS A 1 999 999 AGS AGS . 
C 3 SO4 A 1 2 2 SO4 SO4 . 
D 3 SO4 A 1 3 3 SO4 SO4 . 
E 4 HOH A 1 1 1 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 5 5 HOH HOH . 
E 4 HOH A 4 6 6 HOH HOH . 
E 4 HOH A 5 7 7 HOH HOH . 
E 4 HOH A 6 8 8 HOH HOH . 
E 4 HOH A 7 9 9 HOH HOH . 
E 4 HOH A 8 10 10 HOH HOH . 
E 4 HOH A 9 11 11 HOH HOH . 
E 4 HOH A 10 12 12 HOH HOH . 
E 4 HOH A 11 13 13 HOH HOH . 
E 4 HOH A 12 14 14 HOH HOH . 
E 4 HOH A 13 15 15 HOH HOH . 
E 4 HOH A 14 16 16 HOH HOH . 
E 4 HOH A 15 17 17 HOH HOH . 
E 4 HOH A 16 18 18 HOH HOH . 
E 4 HOH A 17 19 19 HOH HOH . 
E 4 HOH A 18 20 20 HOH HOH . 
E 4 HOH A 19 21 21 HOH HOH . 
E 4 HOH A 20 22 22 HOH HOH . 
E 4 HOH A 21 23 23 HOH HOH . 
E 4 HOH A 22 24 24 HOH HOH . 
E 4 HOH A 23 25 25 HOH HOH . 
E 4 HOH A 24 26 26 HOH HOH . 
E 4 HOH A 25 27 27 HOH HOH . 
E 4 HOH A 26 28 28 HOH HOH . 
E 4 HOH A 27 29 29 HOH HOH . 
E 4 HOH A 28 30 30 HOH HOH . 
E 4 HOH A 29 31 31 HOH HOH . 
E 4 HOH A 30 32 32 HOH HOH . 
E 4 HOH A 31 33 33 HOH HOH . 
E 4 HOH A 32 34 34 HOH HOH . 
E 4 HOH A 33 35 35 HOH HOH . 
E 4 HOH A 34 36 36 HOH HOH . 
E 4 HOH A 35 37 37 HOH HOH . 
E 4 HOH A 36 38 38 HOH HOH . 
E 4 HOH A 37 39 39 HOH HOH . 
E 4 HOH A 38 40 40 HOH HOH . 
E 4 HOH A 39 41 41 HOH HOH . 
E 4 HOH A 40 42 42 HOH HOH . 
E 4 HOH A 41 43 43 HOH HOH . 
E 4 HOH A 42 44 44 HOH HOH . 
E 4 HOH A 43 45 45 HOH HOH . 
E 4 HOH A 44 46 46 HOH HOH . 
E 4 HOH A 45 47 47 HOH HOH . 
E 4 HOH A 46 48 48 HOH HOH . 
E 4 HOH A 47 49 49 HOH HOH . 
E 4 HOH A 48 50 50 HOH HOH . 
E 4 HOH A 49 51 51 HOH HOH . 
E 4 HOH A 50 52 52 HOH HOH . 
E 4 HOH A 51 53 53 HOH HOH . 
E 4 HOH A 52 54 54 HOH HOH . 
E 4 HOH A 53 55 55 HOH HOH . 
E 4 HOH A 54 56 56 HOH HOH . 
E 4 HOH A 55 57 57 HOH HOH . 
E 4 HOH A 56 58 58 HOH HOH . 
E 4 HOH A 57 59 59 HOH HOH . 
E 4 HOH A 58 60 60 HOH HOH . 
E 4 HOH A 59 61 61 HOH HOH . 
E 4 HOH A 60 62 62 HOH HOH . 
E 4 HOH A 61 63 63 HOH HOH . 
E 4 HOH A 62 64 64 HOH HOH . 
E 4 HOH A 63 65 65 HOH HOH . 
E 4 HOH A 64 66 66 HOH HOH . 
E 4 HOH A 65 67 67 HOH HOH . 
E 4 HOH A 66 68 68 HOH HOH . 
E 4 HOH A 67 69 69 HOH HOH . 
E 4 HOH A 68 70 70 HOH HOH . 
E 4 HOH A 69 71 71 HOH HOH . 
E 4 HOH A 70 72 72 HOH HOH . 
E 4 HOH A 71 73 73 HOH HOH . 
E 4 HOH A 72 74 74 HOH HOH . 
E 4 HOH A 73 75 75 HOH HOH . 
E 4 HOH A 74 76 76 HOH HOH . 
E 4 HOH A 75 77 77 HOH HOH . 
E 4 HOH A 76 78 78 HOH HOH . 
E 4 HOH A 77 79 79 HOH HOH . 
E 4 HOH A 78 80 80 HOH HOH . 
E 4 HOH A 79 81 81 HOH HOH . 
E 4 HOH A 80 82 82 HOH HOH . 
E 4 HOH A 81 83 83 HOH HOH . 
E 4 HOH A 82 84 84 HOH HOH . 
E 4 HOH A 83 85 85 HOH HOH . 
E 4 HOH A 84 86 86 HOH HOH . 
E 4 HOH A 85 87 87 HOH HOH . 
E 4 HOH A 86 88 88 HOH HOH . 
E 4 HOH A 87 89 89 HOH HOH . 
E 4 HOH A 88 90 90 HOH HOH . 
E 4 HOH A 89 91 91 HOH HOH . 
E 4 HOH A 90 92 92 HOH HOH . 
E 4 HOH A 91 93 93 HOH HOH . 
E 4 HOH A 92 94 94 HOH HOH . 
E 4 HOH A 93 95 95 HOH HOH . 
E 4 HOH A 94 96 96 HOH HOH . 
E 4 HOH A 95 97 97 HOH HOH . 
E 4 HOH A 96 98 98 HOH HOH . 
E 4 HOH A 97 99 99 HOH HOH . 
E 4 HOH A 98 100 100 HOH HOH . 
E 4 HOH A 99 101 101 HOH HOH . 
E 4 HOH A 100 102 102 HOH HOH . 
E 4 HOH A 101 103 103 HOH HOH . 
E 4 HOH A 102 104 104 HOH HOH . 
E 4 HOH A 103 105 105 HOH HOH . 
E 4 HOH A 104 693 2 HOH HOH . 
E 4 HOH A 105 694 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . B 2 11.77 -11.779 12.954 1 101.02 ? PG AGS 999 A 1 
HETATM 2 S S1G AGS . . . B 2 12.073 -13.681 12.558 1 100.09 ? S1G AGS 999 A 1 
HETATM 3 O O2G AGS . . . B 2 12.274 -11.398 14.321 1 101.49 ? O2G AGS 999 A 1 
HETATM 4 O O3G AGS . . . B 2 10.342 -11.374 12.633 1 99.8 ? O3G AGS 999 A 1 
HETATM 5 P PB AGS . . . B 2 14.442 -10.857 12.304 1 89.8 ? PB AGS 999 A 1 
HETATM 6 O O1B AGS . . . B 2 14.769 -9.392 12.219 1 92.12 ? O1B AGS 999 A 1 
HETATM 7 O O2B AGS . . . B 2 14.859 -11.659 13.505 1 90.04 ? O2B AGS 999 A 1 
HETATM 8 O O3B AGS . . . B 2 12.843 -10.978 12.004 1 94.92 ? O3B AGS 999 A 1 
HETATM 9 P PA AGS . . . B 2 14.732 -10.78 9.499 1 77.54 ? PA AGS 999 A 1 
HETATM 10 O O1A AGS . . . B 2 13.3 -10.281 9.527 1 75.09 ? O1A AGS 999 A 1 
HETATM 11 O O2A AGS . . . B 2 15.878 -9.803 9.475 1 79.35 ? O2A AGS 999 A 1 
HETATM 12 O O3A AGS . . . B 2 14.913 -11.543 10.904 1 84.36 ? O3A AGS 999 A 1 
HETATM 13 O O5' AGS . . . B 2 15.103 -11.895 8.353 1 70.34 ? O5' AGS 999 A 1 
HETATM 14 C C5' AGS . . . B 2 16.472 -12.258 8.297 1 66.77 ? C5' AGS 999 A 1 
HETATM 15 C C4' AGS . . . B 2 17.049 -12.583 6.909 1 63.61 ? C4' AGS 999 A 1 
HETATM 16 O O4' AGS . . . B 2 16.062 -12.547 5.87 1 57.74 ? O4' AGS 999 A 1 
HETATM 17 C C3' AGS . . . B 2 18.07 -11.498 6.566 1 64.5 ? C3' AGS 999 A 1 
HETATM 18 O O3' AGS . . . B 2 18.906 -11.87 5.459 1 65.44 ? O3' AGS 999 A 1 
HETATM 19 C C2' AGS . . . B 2 17.167 -10.45 6.021 1 61.54 ? C2' AGS 999 A 1 
HETATM 20 O O2' AGS . . . B 2 17.96 -9.609 5.232 1 65.9 ? O2' AGS 999 A 1 
HETATM 21 C C1' AGS . . . B 2 16.276 -11.319 5.143 1 58.44 ? C1' AGS 999 A 1 
HETATM 22 N N9 AGS . . . B 2 14.992 -10.704 4.814 1 50.09 ? N9 AGS 999 A 1 
HETATM 23 C C8 AGS . . . B 2 13.941 -10.518 5.654 1 49.31 ? C8 AGS 999 A 1 
HETATM 24 N N7 AGS . . . B 2 12.944 -9.949 5.012 1 47.32 ? N7 AGS 999 A 1 
HETATM 25 C C5 AGS . . . B 2 13.361 -9.796 3.703 1 45.8 ? C5 AGS 999 A 1 
HETATM 26 C C6 AGS . . . B 2 12.721 -9.26 2.587 1 45.28 ? C6 AGS 999 A 1 
HETATM 27 N N6 AGS . . . B 2 11.407 -8.757 2.628 1 37.74 ? N6 AGS 999 A 1 
HETATM 28 N N1 AGS . . . B 2 13.404 -9.253 1.442 1 44.67 ? N1 AGS 999 A 1 
HETATM 29 C C2 AGS . . . B 2 14.655 -9.741 1.458 1 46.54 ? C2 AGS 999 A 1 
HETATM 30 N N3 AGS . . . B 2 15.367 -10.275 2.454 1 46.46 ? N3 AGS 999 A 1 
HETATM 31 C C4 AGS . . . B 2 14.638 -10.263 3.57 1 48.85 ? C4 AGS 999 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#