data_3G0Q # _model_server_result.job_id ifOUuOEe0lhD69fygc0SOA _model_server_result.datetime_utc '2025-03-13 19:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 3G0Q # _exptl.entry_id 3G0Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G0Q _cell.length_a 37.7 _cell.length_b 85.9 _cell.length_c 142.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 5 B DC 5 1_555 B P 8OG 6 B 8OG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale2 B O3' 8OG 6 B 8OG 6 1_555 B P DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? covale ? covale3 C O3' DC 5 C DC 17 1_555 C P A5L 6 C A5L 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 E CA CA . A CA 1 1_555 A O SER 110 A SER 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc2 E CA CA . A CA 1 1_555 A O VAL 115 A VAL 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc3 A SG CYS 190 A CYS 198 1_555 D FE2 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc4 A SG CYS 197 A CYS 205 1_555 D FE4 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 A SG CYS 200 A CYS 208 1_555 D FE3 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 A SG CYS 206 A CYS 214 1_555 D FE1 SF4 . A SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? hydrog 'DA-DT PAIR' hydrog1 B N1 DA 2 B DA 2 1_555 C N3 DT 10 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N1 DG 3 B DG 3 1_555 C N3 DC 9 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N2 DG 3 B DG 3 1_555 C O2 DC 9 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O6 DG 3 B DG 3 1_555 C N4 DC 9 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DA 4 B DA 4 1_555 C N3 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N6 DA 4 B DA 4 1_555 C O4 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 5 B DC 5 1_555 C N1 DG 7 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 5 B DC 5 1_555 C O6 DG 7 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 5 B DC 5 1_555 C N2 DG 7 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog10 B N1 DG 7 B DG 7 1_555 C N3 DC 5 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog11 B N1 DG 8 B DG 8 1_555 C N3 DC 4 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog12 B N1 DG 9 B DG 9 1_555 C N3 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DA 10 B DA 10 1_555 C N3 DT 2 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 DA 10 B DA 10 1_555 C O4 DT 2 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog15 B O2 DC 11 B DC 11 1_555 C N2 DG 1 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 517 n n FE1 S3 SF4 sing 518 n n FE1 S4 SF4 sing 519 n n FE2 S1 SF4 sing 520 n n FE2 S3 SF4 sing 521 n n FE2 S4 SF4 sing 522 n n FE3 S1 SF4 sing 523 n n FE3 S2 SF4 sing 524 n n FE3 S4 SF4 sing 525 n n FE4 S1 SF4 sing 526 n n FE4 S2 SF4 sing 527 n n FE4 S3 SF4 sing 528 n n # _atom_sites.entry_id 3G0Q _atom_sites.fract_transf_matrix[1][1] 0.026525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 A 1 400 400 SF4 SF4 . E 5 CA A 1 1 1 CA CA . F 6 HOH A 1 2 2 HOH HOH . F 6 HOH A 2 3 3 HOH HOH . F 6 HOH A 3 4 4 HOH HOH . F 6 HOH A 4 5 5 HOH HOH . F 6 HOH A 5 7 7 HOH HOH . F 6 HOH A 6 8 8 HOH HOH . F 6 HOH A 7 361 1 HOH HOH . F 6 HOH A 8 362 9 HOH HOH . F 6 HOH A 9 363 11 HOH HOH . F 6 HOH A 10 364 14 HOH HOH . F 6 HOH A 11 365 18 HOH HOH . F 6 HOH A 12 366 20 HOH HOH . F 6 HOH A 13 367 21 HOH HOH . F 6 HOH A 14 368 27 HOH HOH . F 6 HOH A 15 369 31 HOH HOH . F 6 HOH A 16 370 32 HOH HOH . F 6 HOH A 17 371 33 HOH HOH . F 6 HOH A 18 372 39 HOH HOH . F 6 HOH A 19 373 40 HOH HOH . F 6 HOH A 20 374 41 HOH HOH . F 6 HOH A 21 375 42 HOH HOH . F 6 HOH A 22 376 43 HOH HOH . F 6 HOH A 23 377 45 HOH HOH . F 6 HOH A 24 378 47 HOH HOH . F 6 HOH A 25 379 48 HOH HOH . F 6 HOH A 26 380 49 HOH HOH . G 6 HOH B 1 12 12 HOH HOH . G 6 HOH B 2 13 10 HOH HOH . G 6 HOH B 3 16 16 HOH HOH . G 6 HOH B 4 22 22 HOH HOH . G 6 HOH B 5 25 25 HOH HOH . G 6 HOH B 6 28 28 HOH HOH . G 6 HOH B 7 29 29 HOH HOH . G 6 HOH B 8 34 34 HOH HOH . G 6 HOH B 9 35 35 HOH HOH . H 6 HOH C 1 24 13 HOH HOH . H 6 HOH C 2 25 15 HOH HOH . H 6 HOH C 3 26 26 HOH HOH . H 6 HOH C 4 27 17 HOH HOH . H 6 HOH C 5 28 23 HOH HOH . H 6 HOH C 6 36 36 HOH HOH . H 6 HOH C 7 50 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 4 -10.954 -15.208 3.339 1 34.91 ? FE1 SF4 400 A 1 HETATM 2 FE FE2 SF4 . . . D 4 -10.51 -13.753 1.193 1 35.9 ? FE2 SF4 400 A 1 HETATM 3 FE FE3 SF4 . . . D 4 -8.592 -13.992 2.925 1 36.18 ? FE3 SF4 400 A 1 HETATM 4 FE FE4 SF4 . . . D 4 -9.263 -16.113 1.505 1 36.32 ? FE4 SF4 400 A 1 HETATM 5 S S1 SF4 . . . D 4 -8.328 -14.269 0.787 1 37.45 ? S1 SF4 400 A 1 HETATM 6 S S2 SF4 . . . D 4 -8.893 -15.928 3.607 1 36.86 ? S2 SF4 400 A 1 HETATM 7 S S3 SF4 . . . D 4 -11.438 -15.771 1.255 1 35.42 ? S3 SF4 400 A 1 HETATM 8 S S4 SF4 . . . D 4 -10.609 -12.948 3.151 1 36.7 ? S4 SF4 400 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #