data_3G0X # _model_server_result.job_id kEcuwEkoLsp1YJ8l6KyUGA _model_server_result.datetime_utc '2024-10-19 15:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3G0X # _exptl.entry_id 3G0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.343 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-N-biphenyl-4-yl-2-cyano-3-cyclopropyl-3-hydroxyprop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G0X _cell.length_a 91.045 _cell.length_b 91.045 _cell.length_c 123.762 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H16 N2 O2' _chem_comp.formula_weight 304.343 _chem_comp.id MD7 _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-N-biphenyl-4-yl-2-cyano-3-cyclopropyl-3-hydroxyprop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(Biphenyl-4-yl)-2-cyano-3-cyclopropyl-3-hydroxyacrylamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAO MD7 sing 259 n n CAN CAW MD7 sing 260 n n CAO CAW MD7 sing 261 n n CAW CAS MD7 sing 262 n n CAS OAC MD7 sing 263 n n CAS CAR MD7 doub 264 n n CAR CAD MD7 sing 265 n n CAR CAQ MD7 sing 266 n n CAD NAA MD7 trip 267 n n CAQ OAB MD7 doub 268 n n CAQ NAP MD7 sing 269 z n NAP CAT MD7 sing 270 n n CAT CAK MD7 doub 271 n y CAT CAJ MD7 sing 272 n y CAK CAM MD7 sing 273 n y CAM CAV MD7 doub 274 n y CAJ CAL MD7 doub 275 n y CAL CAV MD7 sing 276 n y CAV CAU MD7 sing 277 n y CAU CAH MD7 doub 278 n y CAU CAI MD7 sing 279 n y CAH CAF MD7 sing 280 n y CAF CAE MD7 doub 281 n y CAE CAG MD7 sing 282 n y CAG CAI MD7 doub 283 n y CAN HAN MD7 sing 284 n n CAN HANA MD7 sing 285 n n CAO HAO MD7 sing 286 n n CAO HAOA MD7 sing 287 n n CAW HAW MD7 sing 288 n n OAC HOAC MD7 sing 289 n n NAP HNAP MD7 sing 290 n n CAK HAK MD7 sing 291 n n CAM HAM MD7 sing 292 n n CAJ HAJ MD7 sing 293 n n CAL HAL MD7 sing 294 n n CAH HAH MD7 sing 295 n n CAF HAF MD7 sing 296 n n CAE HAE MD7 sing 297 n n CAG HAG MD7 sing 298 n n CAI HAI MD7 sing 299 n n # _atom_sites.entry_id 3G0X _atom_sites.fract_transf_matrix[1][1] 0.010984 _atom_sites.fract_transf_matrix[1][2] 0.006341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 398 398 FMN FMN . C 3 ORO A 1 1 1 ORO ORO . D 4 MD7 A 1 2 2 MD7 DRG . E 5 SO4 A 1 3 3 SO4 SO4 . F 6 HOH A 1 4 4 HOH HOH . F 6 HOH A 2 5 5 HOH HOH . F 6 HOH A 3 6 6 HOH HOH . F 6 HOH A 4 7 7 HOH HOH . F 6 HOH A 5 8 8 HOH HOH . F 6 HOH A 6 9 9 HOH HOH . F 6 HOH A 7 10 10 HOH HOH . F 6 HOH A 8 11 11 HOH HOH . F 6 HOH A 9 12 12 HOH HOH . F 6 HOH A 10 13 13 HOH HOH . F 6 HOH A 11 14 14 HOH HOH . F 6 HOH A 12 15 15 HOH HOH . F 6 HOH A 13 16 16 HOH HOH . F 6 HOH A 14 18 18 HOH HOH . F 6 HOH A 15 19 19 HOH HOH . F 6 HOH A 16 20 20 HOH HOH . F 6 HOH A 17 21 21 HOH HOH . F 6 HOH A 18 22 22 HOH HOH . F 6 HOH A 19 23 23 HOH HOH . F 6 HOH A 20 24 24 HOH HOH . F 6 HOH A 21 25 25 HOH HOH . F 6 HOH A 22 26 26 HOH HOH . F 6 HOH A 23 27 27 HOH HOH . F 6 HOH A 24 28 28 HOH HOH . F 6 HOH A 25 29 29 HOH HOH . F 6 HOH A 26 397 1 HOH HOH . F 6 HOH A 27 399 2 HOH HOH . F 6 HOH A 28 400 3 HOH HOH . F 6 HOH A 29 401 30 HOH HOH . F 6 HOH A 30 402 31 HOH HOH . F 6 HOH A 31 403 32 HOH HOH . F 6 HOH A 32 404 33 HOH HOH . F 6 HOH A 33 405 34 HOH HOH . F 6 HOH A 34 406 35 HOH HOH . F 6 HOH A 35 407 36 HOH HOH . F 6 HOH A 36 408 37 HOH HOH . F 6 HOH A 37 409 38 HOH HOH . F 6 HOH A 38 410 39 HOH HOH . F 6 HOH A 39 411 40 HOH HOH . F 6 HOH A 40 412 41 HOH HOH . F 6 HOH A 41 413 42 HOH HOH . F 6 HOH A 42 414 43 HOH HOH . F 6 HOH A 43 415 44 HOH HOH . F 6 HOH A 44 416 45 HOH HOH . F 6 HOH A 45 417 46 HOH HOH . F 6 HOH A 46 418 47 HOH HOH . F 6 HOH A 47 419 48 HOH HOH . F 6 HOH A 48 420 49 HOH HOH . F 6 HOH A 49 421 50 HOH HOH . F 6 HOH A 50 422 51 HOH HOH . F 6 HOH A 51 423 52 HOH HOH . F 6 HOH A 52 424 53 HOH HOH . F 6 HOH A 53 425 54 HOH HOH . F 6 HOH A 54 426 55 HOH HOH . F 6 HOH A 55 427 56 HOH HOH . F 6 HOH A 56 428 57 HOH HOH . F 6 HOH A 57 429 58 HOH HOH . F 6 HOH A 58 430 59 HOH HOH . F 6 HOH A 59 431 60 HOH HOH . F 6 HOH A 60 432 61 HOH HOH . F 6 HOH A 61 433 62 HOH HOH . F 6 HOH A 62 434 63 HOH HOH . F 6 HOH A 63 435 64 HOH HOH . F 6 HOH A 64 436 66 HOH HOH . F 6 HOH A 65 437 67 HOH HOH . F 6 HOH A 66 438 68 HOH HOH . F 6 HOH A 67 439 69 HOH HOH . F 6 HOH A 68 440 70 HOH HOH . F 6 HOH A 69 441 71 HOH HOH . F 6 HOH A 70 442 72 HOH HOH . F 6 HOH A 71 443 73 HOH HOH . F 6 HOH A 72 444 74 HOH HOH . F 6 HOH A 73 445 75 HOH HOH . F 6 HOH A 74 446 76 HOH HOH . F 6 HOH A 75 447 77 HOH HOH . F 6 HOH A 76 448 78 HOH HOH . F 6 HOH A 77 449 80 HOH HOH . F 6 HOH A 78 450 81 HOH HOH . F 6 HOH A 79 451 82 HOH HOH . F 6 HOH A 80 452 83 HOH HOH . F 6 HOH A 81 453 84 HOH HOH . F 6 HOH A 82 454 85 HOH HOH . F 6 HOH A 83 455 86 HOH HOH . F 6 HOH A 84 456 87 HOH HOH . F 6 HOH A 85 457 88 HOH HOH . F 6 HOH A 86 458 89 HOH HOH . F 6 HOH A 87 459 90 HOH HOH . F 6 HOH A 88 460 91 HOH HOH . F 6 HOH A 89 461 92 HOH HOH . F 6 HOH A 90 462 93 HOH HOH . F 6 HOH A 91 463 94 HOH HOH . F 6 HOH A 92 464 95 HOH HOH . F 6 HOH A 93 465 96 HOH HOH . F 6 HOH A 94 466 97 HOH HOH . F 6 HOH A 95 467 98 HOH HOH . F 6 HOH A 96 468 99 HOH HOH . F 6 HOH A 97 469 100 HOH HOH . F 6 HOH A 98 470 101 HOH HOH . F 6 HOH A 99 471 102 HOH HOH . F 6 HOH A 100 472 103 HOH HOH . F 6 HOH A 101 473 104 HOH HOH . F 6 HOH A 102 474 105 HOH HOH . F 6 HOH A 103 475 106 HOH HOH . F 6 HOH A 104 476 107 HOH HOH . F 6 HOH A 105 477 109 HOH HOH . F 6 HOH A 106 478 111 HOH HOH . F 6 HOH A 107 479 112 HOH HOH . F 6 HOH A 108 480 113 HOH HOH . F 6 HOH A 109 481 114 HOH HOH . F 6 HOH A 110 482 115 HOH HOH . F 6 HOH A 111 483 116 HOH HOH . F 6 HOH A 112 484 117 HOH HOH . F 6 HOH A 113 485 118 HOH HOH . F 6 HOH A 114 486 120 HOH HOH . F 6 HOH A 115 487 121 HOH HOH . F 6 HOH A 116 488 122 HOH HOH . F 6 HOH A 117 489 123 HOH HOH . F 6 HOH A 118 490 124 HOH HOH . F 6 HOH A 119 491 126 HOH HOH . F 6 HOH A 120 492 127 HOH HOH . F 6 HOH A 121 493 128 HOH HOH . F 6 HOH A 122 494 129 HOH HOH . F 6 HOH A 123 495 130 HOH HOH . F 6 HOH A 124 496 132 HOH HOH . F 6 HOH A 125 497 133 HOH HOH . F 6 HOH A 126 498 134 HOH HOH . F 6 HOH A 127 499 136 HOH HOH . F 6 HOH A 128 500 137 HOH HOH . F 6 HOH A 129 501 139 HOH HOH . F 6 HOH A 130 502 142 HOH HOH . F 6 HOH A 131 503 143 HOH HOH . F 6 HOH A 132 504 146 HOH HOH . F 6 HOH A 133 505 148 HOH HOH . F 6 HOH A 134 506 149 HOH HOH . F 6 HOH A 135 507 150 HOH HOH . F 6 HOH A 136 508 152 HOH HOH . F 6 HOH A 137 509 153 HOH HOH . F 6 HOH A 138 510 155 HOH HOH . F 6 HOH A 139 511 157 HOH HOH . F 6 HOH A 140 512 159 HOH HOH . F 6 HOH A 141 513 160 HOH HOH . F 6 HOH A 142 514 162 HOH HOH . F 6 HOH A 143 515 164 HOH HOH . F 6 HOH A 144 516 165 HOH HOH . F 6 HOH A 145 517 166 HOH HOH . F 6 HOH A 146 518 168 HOH HOH . F 6 HOH A 147 519 171 HOH HOH . F 6 HOH A 148 520 172 HOH HOH . F 6 HOH A 149 521 173 HOH HOH . F 6 HOH A 150 522 174 HOH HOH . F 6 HOH A 151 523 175 HOH HOH . F 6 HOH A 152 524 176 HOH HOH . F 6 HOH A 153 525 177 HOH HOH . F 6 HOH A 154 526 180 HOH HOH . F 6 HOH A 155 527 185 HOH HOH . F 6 HOH A 156 528 186 HOH HOH . F 6 HOH A 157 529 187 HOH HOH . F 6 HOH A 158 530 188 HOH HOH . F 6 HOH A 159 531 189 HOH HOH . F 6 HOH A 160 532 190 HOH HOH . F 6 HOH A 161 533 191 HOH HOH . F 6 HOH A 162 534 192 HOH HOH . F 6 HOH A 163 535 193 HOH HOH . F 6 HOH A 164 536 194 HOH HOH . F 6 HOH A 165 537 195 HOH HOH . F 6 HOH A 166 538 196 HOH HOH . F 6 HOH A 167 539 197 HOH HOH . F 6 HOH A 168 540 198 HOH HOH . F 6 HOH A 169 541 199 HOH HOH . F 6 HOH A 170 542 200 HOH HOH . F 6 HOH A 171 543 201 HOH HOH . F 6 HOH A 172 544 202 HOH HOH . F 6 HOH A 173 545 203 HOH HOH . F 6 HOH A 174 546 204 HOH HOH . F 6 HOH A 175 547 206 HOH HOH . F 6 HOH A 176 548 207 HOH HOH . F 6 HOH A 177 549 208 HOH HOH . F 6 HOH A 178 550 209 HOH HOH . F 6 HOH A 179 551 210 HOH HOH . F 6 HOH A 180 552 211 HOH HOH . F 6 HOH A 181 553 214 HOH HOH . F 6 HOH A 182 554 216 HOH HOH . F 6 HOH A 183 555 217 HOH HOH . F 6 HOH A 184 556 218 HOH HOH . F 6 HOH A 185 557 219 HOH HOH . F 6 HOH A 186 558 220 HOH HOH . F 6 HOH A 187 559 221 HOH HOH . F 6 HOH A 188 560 223 HOH HOH . F 6 HOH A 189 561 224 HOH HOH . F 6 HOH A 190 562 225 HOH HOH . F 6 HOH A 191 563 226 HOH HOH . F 6 HOH A 192 564 227 HOH HOH . F 6 HOH A 193 565 228 HOH HOH . F 6 HOH A 194 566 229 HOH HOH . F 6 HOH A 195 567 230 HOH HOH . F 6 HOH A 196 568 231 HOH HOH . F 6 HOH A 197 569 232 HOH HOH . F 6 HOH A 198 570 233 HOH HOH . F 6 HOH A 199 571 235 HOH HOH . F 6 HOH A 200 572 236 HOH HOH . F 6 HOH A 201 573 237 HOH HOH . F 6 HOH A 202 574 238 HOH HOH . F 6 HOH A 203 575 239 HOH HOH . F 6 HOH A 204 576 242 HOH HOH . F 6 HOH A 205 577 243 HOH HOH . F 6 HOH A 206 578 244 HOH HOH . F 6 HOH A 207 579 245 HOH HOH . F 6 HOH A 208 580 246 HOH HOH . F 6 HOH A 209 581 247 HOH HOH . F 6 HOH A 210 582 248 HOH HOH . F 6 HOH A 211 583 249 HOH HOH . F 6 HOH A 212 584 250 HOH HOH . F 6 HOH A 213 585 252 HOH HOH . F 6 HOH A 214 586 253 HOH HOH . F 6 HOH A 215 587 254 HOH HOH . F 6 HOH A 216 588 256 HOH HOH . F 6 HOH A 217 589 257 HOH HOH . F 6 HOH A 218 590 258 HOH HOH . F 6 HOH A 219 591 259 HOH HOH . F 6 HOH A 220 592 260 HOH HOH . F 6 HOH A 221 593 261 HOH HOH . F 6 HOH A 222 594 262 HOH HOH . F 6 HOH A 223 595 263 HOH HOH . F 6 HOH A 224 596 264 HOH HOH . F 6 HOH A 225 597 265 HOH HOH . F 6 HOH A 226 598 266 HOH HOH . F 6 HOH A 227 599 267 HOH HOH . F 6 HOH A 228 600 268 HOH HOH . F 6 HOH A 229 601 269 HOH HOH . F 6 HOH A 230 602 270 HOH HOH . F 6 HOH A 231 603 272 HOH HOH . F 6 HOH A 232 604 273 HOH HOH . F 6 HOH A 233 605 274 HOH HOH . F 6 HOH A 234 606 275 HOH HOH . F 6 HOH A 235 607 276 HOH HOH . F 6 HOH A 236 608 277 HOH HOH . F 6 HOH A 237 609 278 HOH HOH . F 6 HOH A 238 610 279 HOH HOH . F 6 HOH A 239 611 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN MD7 . . . D 4 2.583 -41.518 -1.003 1 43.79 ? CAN MD7 2 A 1 HETATM 2 C CAO MD7 . . . D 4 1.629 -40.751 -1.981 1 44.53 ? CAO MD7 2 A 1 HETATM 3 C CAW MD7 . . . D 4 2.267 -40.004 -0.83 1 42.65 ? CAW MD7 2 A 1 HETATM 4 C CAS MD7 . . . D 4 3.199 -38.814 -1.309 1 45.07 ? CAS MD7 2 A 1 HETATM 5 O OAC MD7 . . . D 4 3.834 -38.116 -0.299 1 40.43 ? OAC MD7 2 A 1 HETATM 6 C CAR MD7 . . . D 4 3.454 -38.268 -2.788 1 45.76 ? CAR MD7 2 A 1 HETATM 7 C CAD MD7 . . . D 4 2.962 -38.775 -4.038 1 45.84 ? CAD MD7 2 A 1 HETATM 8 N NAA MD7 . . . D 4 2.642 -39.034 -5.113 1 44.33 ? NAA MD7 2 A 1 HETATM 9 C CAQ MD7 . . . D 4 4.356 -36.989 -2.957 1 46.8 ? CAQ MD7 2 A 1 HETATM 10 O OAB MD7 . . . D 4 4.552 -36.47 -4.069 1 48.19 ? OAB MD7 2 A 1 HETATM 11 N NAP MD7 . . . D 4 4.743 -36.443 -1.812 1 47.25 ? NAP MD7 2 A 1 HETATM 12 C CAT MD7 . . . D 4 5.527 -35.373 -1.664 1 48.2 ? CAT MD7 2 A 1 HETATM 13 C CAK MD7 . . . D 4 6.469 -35.06 -2.656 1 50.35 ? CAK MD7 2 A 1 HETATM 14 C CAM MD7 . . . D 4 7.313 -33.965 -2.403 1 49.46 ? CAM MD7 2 A 1 HETATM 15 C CAJ MD7 . . . D 4 5.438 -34.585 -0.48 1 46.17 ? CAJ MD7 2 A 1 HETATM 16 C CAL MD7 . . . D 4 6.279 -33.485 -0.223 1 47.51 ? CAL MD7 2 A 1 HETATM 17 C CAV MD7 . . . D 4 7.187 -33.157 -1.242 1 49.94 ? CAV MD7 2 A 1 HETATM 18 C CAU MD7 . . . D 4 8.172 -32.197 -1.069 1 48.81 ? CAU MD7 2 A 1 HETATM 19 C CAH MD7 . . . D 4 8.769 -32.26 0.197 1 45.33 ? CAH MD7 2 A 1 HETATM 20 C CAF MD7 . . . D 4 9.839 -31.436 0.512 1 45.88 ? CAF MD7 2 A 1 HETATM 21 C CAE MD7 . . . D 4 10.365 -30.577 -0.465 1 47.55 ? CAE MD7 2 A 1 HETATM 22 C CAG MD7 . . . D 4 9.81 -30.554 -1.759 1 49.98 ? CAG MD7 2 A 1 HETATM 23 C CAI MD7 . . . D 4 8.73 -31.397 -2.087 1 50.6 ? CAI MD7 2 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #