data_3G1O # _model_server_result.job_id 6aVnpnt0Y_q1TjBKSI7HLg _model_server_result.datetime_utc '2024-12-27 01:13:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":237}' # _entry.id 3G1O # _exptl.entry_id 3G1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl 4-(3-thiophen-2-yl-1,2,4-oxadiazol-5-yl)piperidine-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G1O _cell.length_a 121.23 _cell.length_b 121.23 _cell.length_c 33.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 121.23 121.23 16.84 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H21 N3 O3 S' _chem_comp.formula_weight 335.421 _chem_comp.id RF1 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl 4-(3-thiophen-2-yl-1,2,4-oxadiazol-5-yl)piperidine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C14 RF1 sing 264 n n C14 H14 RF1 sing 265 n n C14 H14A RF1 sing 266 n n C14 H14B RF1 sing 267 n n C16 C10 RF1 sing 268 n n O2 C10 RF1 sing 269 n n C10 C15 RF1 sing 270 n n C15 H15 RF1 sing 271 n n C15 H15A RF1 sing 272 n n C15 H15B RF1 sing 273 n n C16 H16 RF1 sing 274 n n C16 H16A RF1 sing 275 n n C16 H16B RF1 sing 276 n n C3 O2 RF1 sing 277 n n O3 C3 RF1 doub 278 n n C3 N3 RF1 sing 279 n n C6 N3 RF1 sing 280 n n N3 C7 RF1 sing 281 n n C12 C7 RF1 sing 282 n n C7 H7 RF1 sing 283 n n C7 H7A RF1 sing 284 n n C5 C12 RF1 sing 285 n n C12 H12 RF1 sing 286 n n C12 H12A RF1 sing 287 n n C13 C6 RF1 sing 288 n n C6 H6 RF1 sing 289 n n C6 H6A RF1 sing 290 n n C13 C5 RF1 sing 291 n n C13 H13 RF1 sing 292 n n C13 H13A RF1 sing 293 n n C2 C5 RF1 sing 294 n n C5 H5 RF1 sing 295 n n N1 C2 RF1 doub 296 n y C2 O1 RF1 sing 297 n y N1 C1 RF1 sing 298 n y N2 O1 RF1 sing 299 n y C1 N2 RF1 doub 300 n y C4 C1 RF1 sing 301 n y C8 C4 RF1 doub 302 n y C4 S1 RF1 sing 303 n y C11 C8 RF1 sing 304 n y C8 H8 RF1 sing 305 n n C11 C9 RF1 doub 306 n y C11 H11 RF1 sing 307 n n C9 S1 RF1 sing 308 n y C9 H9 RF1 sing 309 n n # _atom_sites.entry_id 3G1O _atom_sites.fract_transf_matrix[1][1] 0.008249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RF1 A 1 237 1 RF1 RF1 . C 3 HOH A 1 238 2 HOH HOH . C 3 HOH A 2 239 3 HOH HOH . C 3 HOH A 3 240 4 HOH HOH . C 3 HOH A 4 241 5 HOH HOH . C 3 HOH A 5 242 6 HOH HOH . C 3 HOH A 6 243 7 HOH HOH . C 3 HOH A 7 244 8 HOH HOH . C 3 HOH A 8 245 9 HOH HOH . C 3 HOH A 9 246 10 HOH HOH . C 3 HOH A 10 247 11 HOH HOH . C 3 HOH A 11 248 12 HOH HOH . C 3 HOH A 12 249 13 HOH HOH . C 3 HOH A 13 250 14 HOH HOH . C 3 HOH A 14 251 15 HOH HOH . C 3 HOH A 15 252 16 HOH HOH . C 3 HOH A 16 253 17 HOH HOH . C 3 HOH A 17 254 18 HOH HOH . C 3 HOH A 18 255 19 HOH HOH . C 3 HOH A 19 256 20 HOH HOH . C 3 HOH A 20 257 21 HOH HOH . C 3 HOH A 21 258 22 HOH HOH . C 3 HOH A 22 259 23 HOH HOH . C 3 HOH A 23 260 24 HOH HOH . C 3 HOH A 24 261 25 HOH HOH . C 3 HOH A 25 262 26 HOH HOH . C 3 HOH A 26 263 27 HOH HOH . C 3 HOH A 27 264 28 HOH HOH . C 3 HOH A 28 265 29 HOH HOH . C 3 HOH A 29 266 30 HOH HOH . C 3 HOH A 30 267 31 HOH HOH . C 3 HOH A 31 268 32 HOH HOH . C 3 HOH A 32 269 33 HOH HOH . C 3 HOH A 33 270 34 HOH HOH . C 3 HOH A 34 271 35 HOH HOH . C 3 HOH A 35 272 36 HOH HOH . C 3 HOH A 36 273 37 HOH HOH . C 3 HOH A 37 274 38 HOH HOH . C 3 HOH A 38 275 39 HOH HOH . C 3 HOH A 39 276 40 HOH HOH . C 3 HOH A 40 277 41 HOH HOH . C 3 HOH A 41 278 42 HOH HOH . C 3 HOH A 42 279 43 HOH HOH . C 3 HOH A 43 280 44 HOH HOH . C 3 HOH A 44 281 45 HOH HOH . C 3 HOH A 45 282 46 HOH HOH . C 3 HOH A 46 283 47 HOH HOH . C 3 HOH A 47 284 48 HOH HOH . C 3 HOH A 48 285 49 HOH HOH . C 3 HOH A 49 286 50 HOH HOH . C 3 HOH A 50 287 51 HOH HOH . C 3 HOH A 51 288 52 HOH HOH . C 3 HOH A 52 289 53 HOH HOH . C 3 HOH A 53 290 54 HOH HOH . C 3 HOH A 54 291 55 HOH HOH . C 3 HOH A 55 292 56 HOH HOH . C 3 HOH A 56 293 58 HOH HOH . C 3 HOH A 57 294 59 HOH HOH . C 3 HOH A 58 295 60 HOH HOH . C 3 HOH A 59 296 61 HOH HOH . C 3 HOH A 60 297 62 HOH HOH . C 3 HOH A 61 298 63 HOH HOH . C 3 HOH A 62 299 64 HOH HOH . C 3 HOH A 63 300 65 HOH HOH . C 3 HOH A 64 301 66 HOH HOH . C 3 HOH A 65 302 67 HOH HOH . C 3 HOH A 66 303 68 HOH HOH . C 3 HOH A 67 304 69 HOH HOH . C 3 HOH A 68 305 70 HOH HOH . C 3 HOH A 69 306 71 HOH HOH . C 3 HOH A 70 307 72 HOH HOH . C 3 HOH A 71 308 73 HOH HOH . C 3 HOH A 72 309 74 HOH HOH . C 3 HOH A 73 310 75 HOH HOH . C 3 HOH A 74 311 76 HOH HOH . C 3 HOH A 75 312 77 HOH HOH . C 3 HOH A 76 313 78 HOH HOH . C 3 HOH A 77 314 79 HOH HOH . C 3 HOH A 78 315 80 HOH HOH . C 3 HOH A 79 316 81 HOH HOH . C 3 HOH A 80 317 82 HOH HOH . C 3 HOH A 81 318 83 HOH HOH . C 3 HOH A 82 319 84 HOH HOH . C 3 HOH A 83 320 85 HOH HOH . C 3 HOH A 84 321 86 HOH HOH . C 3 HOH A 85 322 87 HOH HOH . C 3 HOH A 86 323 88 HOH HOH . C 3 HOH A 87 324 89 HOH HOH . C 3 HOH A 88 325 1 HOH HOH . C 3 HOH A 89 326 5 HOH HOH . C 3 HOH A 90 327 7 HOH HOH . C 3 HOH A 91 328 8 HOH HOH . C 3 HOH A 92 329 10 HOH HOH . C 3 HOH A 93 330 11 HOH HOH . C 3 HOH A 94 331 13 HOH HOH . C 3 HOH A 95 332 18 HOH HOH . C 3 HOH A 96 333 20 HOH HOH . C 3 HOH A 97 334 22 HOH HOH . C 3 HOH A 98 335 24 HOH HOH . C 3 HOH A 99 336 25 HOH HOH . C 3 HOH A 100 337 26 HOH HOH . C 3 HOH A 101 338 29 HOH HOH . C 3 HOH A 102 339 33 HOH HOH . C 3 HOH A 103 340 34 HOH HOH . C 3 HOH A 104 341 39 HOH HOH . C 3 HOH A 105 342 40 HOH HOH . C 3 HOH A 106 343 41 HOH HOH . C 3 HOH A 107 344 42 HOH HOH . C 3 HOH A 108 345 63 HOH HOH . C 3 HOH A 109 346 66 HOH HOH . C 3 HOH A 110 347 71 HOH HOH . C 3 HOH A 111 348 72 HOH HOH . C 3 HOH A 112 349 74 HOH HOH . C 3 HOH A 113 350 75 HOH HOH . C 3 HOH A 114 351 82 HOH HOH . C 3 HOH A 115 352 83 HOH HOH . C 3 HOH A 116 353 137 HOH HOH . C 3 HOH A 117 354 190 HOH HOH . C 3 HOH A 118 355 191 HOH HOH . C 3 HOH A 119 356 194 HOH HOH . C 3 HOH A 120 357 195 HOH HOH . C 3 HOH A 121 358 197 HOH HOH . C 3 HOH A 122 359 203 HOH HOH . C 3 HOH A 123 360 205 HOH HOH . C 3 HOH A 124 361 207 HOH HOH . C 3 HOH A 125 362 213 HOH HOH . C 3 HOH A 126 363 233 HOH HOH . C 3 HOH A 127 364 2 HOH HOH . C 3 HOH A 128 365 9 HOH HOH . C 3 HOH A 129 366 14 HOH HOH . C 3 HOH A 130 367 15 HOH HOH . C 3 HOH A 131 368 22 HOH HOH . C 3 HOH A 132 369 30 HOH HOH . C 3 HOH A 133 370 75 HOH HOH . C 3 HOH A 134 371 76 HOH HOH . C 3 HOH A 135 372 167 HOH HOH . C 3 HOH A 136 373 182 HOH HOH . C 3 HOH A 137 374 183 HOH HOH . C 3 HOH A 138 375 186 HOH HOH . C 3 HOH A 139 376 187 HOH HOH . C 3 HOH A 140 377 190 HOH HOH . C 3 HOH A 141 378 193 HOH HOH . C 3 HOH A 142 379 11 HOH HOH . C 3 HOH A 143 380 23 HOH HOH . C 3 HOH A 144 381 176 HOH HOH . C 3 HOH A 145 382 184 HOH HOH . C 3 HOH A 146 383 187 HOH HOH . C 3 HOH A 147 384 206 HOH HOH . C 3 HOH A 148 385 208 HOH HOH . C 3 HOH A 149 386 10 HOH HOH . C 3 HOH A 150 387 90 HOH HOH . C 3 HOH A 151 388 172 HOH HOH . C 3 HOH A 152 389 173 HOH HOH . C 3 HOH A 153 390 175 HOH HOH . C 3 HOH A 154 391 176 HOH HOH . C 3 HOH A 155 392 177 HOH HOH . C 3 HOH A 156 393 182 HOH HOH . C 3 HOH A 157 394 186 HOH HOH . C 3 HOH A 158 395 199 HOH HOH . C 3 HOH A 159 396 200 HOH HOH . C 3 HOH A 160 397 11 HOH HOH . C 3 HOH A 161 398 19 HOH HOH . C 3 HOH A 162 399 56 HOH HOH . C 3 HOH A 163 400 155 HOH HOH . C 3 HOH A 164 401 174 HOH HOH . C 3 HOH A 165 402 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 RF1 . . . B 2 32.876 64.861 14.062 1 19.95 ? C14 RF1 237 A 1 HETATM 2 C C10 RF1 . . . B 2 33.555 65.251 12.757 1 20.23 ? C10 RF1 237 A 1 HETATM 3 C C15 RF1 . . . B 2 34.966 64.691 12.775 1 19.8 ? C15 RF1 237 A 1 HETATM 4 C C16 RF1 . . . B 2 32.752 64.657 11.598 1 21 ? C16 RF1 237 A 1 HETATM 5 O O2 RF1 . . . B 2 33.576 66.748 12.751 1 22.5 ? O2 RF1 237 A 1 HETATM 6 C C3 RF1 . . . B 2 34.02 67.51 11.704 1 18.88 ? C3 RF1 237 A 1 HETATM 7 O O3 RF1 . . . B 2 34.522 66.983 10.705 1 19.57 ? O3 RF1 237 A 1 HETATM 8 N N3 RF1 . . . B 2 33.908 68.848 11.762 1 16.46 ? N3 RF1 237 A 1 HETATM 9 C C7 RF1 . . . B 2 33.35 69.501 12.992 1 14.67 ? C7 RF1 237 A 1 HETATM 10 C C12 RF1 . . . B 2 32.677 70.831 12.714 1 15.7 ? C12 RF1 237 A 1 HETATM 11 C C6 RF1 . . . B 2 34.442 69.618 10.611 1 15.29 ? C6 RF1 237 A 1 HETATM 12 C C13 RF1 . . . B 2 33.562 70.853 10.333 1 16.22 ? C13 RF1 237 A 1 HETATM 13 C C5 RF1 . . . B 2 33.404 71.655 11.629 1 16.41 ? C5 RF1 237 A 1 HETATM 14 C C2 RF1 . . . B 2 32.59 72.936 11.443 1 17.4 ? C2 RF1 237 A 1 HETATM 15 N N1 RF1 . . . B 2 32.562 73.758 10.407 1 16.88 ? N1 RF1 237 A 1 HETATM 16 O O1 RF1 . . . B 2 31.799 73.408 12.445 1 17.19 ? O1 RF1 237 A 1 HETATM 17 N N2 RF1 . . . B 2 31.251 74.584 11.954 1 19.09 ? N2 RF1 237 A 1 HETATM 18 C C1 RF1 . . . B 2 31.719 74.767 10.744 1 17.54 ? C1 RF1 237 A 1 HETATM 19 C C4 RF1 . . . B 2 31.332 75.857 9.983 1 17.84 ? C4 RF1 237 A 1 HETATM 20 C C8 RF1 . . . B 2 31.394 76.039 8.664 1 16.23 ? C8 RF1 237 A 1 HETATM 21 C C11 RF1 . . . B 2 30.908 77.223 8.242 1 17.68 ? C11 RF1 237 A 1 HETATM 22 C C9 RF1 . . . B 2 30.445 78.053 9.195 1 19.34 ? C9 RF1 237 A 1 HETATM 23 S S1 RF1 . . . B 2 30.63 77.221 10.673 1 20.51 ? S1 RF1 237 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #