data_3G1X
#
_model_server_result.job_id            LYoc9C8lgyeaF8iRFBefpA 
_model_server_result.datetime_utc      '2024-10-16 20:54:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g1x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":230}' 
#
_entry.id    3G1X 
#
_exptl.entry_id    3G1X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3G1X 
_cell.length_a            56.419 
_cell.length_b            56.419 
_cell.length_c            127.508 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G1X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                U5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 U5P sing 330 n n 
N1 C6 U5P sing 331 n n 
N1 C1' U5P sing 332 n n 
C2 N3 U5P sing 333 n n 
C2 O2 U5P doub 334 n n 
N3 C4 U5P sing 335 n n 
N3 HN3 U5P sing 336 n n 
C4 C5 U5P sing 337 n n 
C4 O4 U5P doub 338 n n 
C5 C6 U5P doub 339 n n 
C5 H5 U5P sing 340 n n 
C6 H6 U5P sing 341 n n 
C1' C2' U5P sing 342 n n 
C1' O4' U5P sing 343 n n 
C1' H1' U5P sing 344 n n 
C2' O2' U5P sing 345 n n 
C2' C3' U5P sing 346 n n 
C2' H2' U5P sing 347 n n 
O2' HO2' U5P sing 348 n n 
C3' C4' U5P sing 349 n n 
C3' O3' U5P sing 350 n n 
C3' H3' U5P sing 351 n n 
C4' O4' U5P sing 352 n n 
C4' C5' U5P sing 353 n n 
C4' H4' U5P sing 354 n n 
O3' HO3' U5P sing 355 n n 
C5' O5' U5P sing 356 n n 
C5' "H5'1" U5P sing 357 n n 
C5' "H5'2" U5P sing 358 n n 
O5' P U5P sing 359 n n 
P O1P U5P doub 360 n n 
P O2P U5P sing 361 n n 
P O3P U5P sing 362 n n 
O2P HOP2 U5P sing 363 n n 
O3P HOP3 U5P sing 364 n n 
#
_atom_sites.entry_id                     3G1X 
_atom_sites.fract_transf_matrix[1][1]    0.017725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017725 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 U5P A 1 229 229 U5P U . 
D 3 CL A 1 231 231 CL CL . 
E 2 U5P B 1 230 230 U5P U . 
F 3 CL B 1 229 229 CL CL . 
G 4 HOH A 1 232 232 HOH HOH . 
G 4 HOH A 2 233 233 HOH HOH . 
G 4 HOH A 3 234 234 HOH HOH . 
G 4 HOH A 4 235 235 HOH HOH . 
G 4 HOH A 5 236 236 HOH HOH . 
G 4 HOH A 6 237 237 HOH HOH . 
G 4 HOH A 7 238 238 HOH HOH . 
G 4 HOH A 8 239 239 HOH HOH . 
G 4 HOH A 9 241 241 HOH HOH . 
G 4 HOH A 10 242 242 HOH HOH . 
G 4 HOH A 11 243 243 HOH HOH . 
G 4 HOH A 12 244 244 HOH HOH . 
G 4 HOH A 13 245 245 HOH HOH . 
G 4 HOH A 14 246 246 HOH HOH . 
G 4 HOH A 15 248 248 HOH HOH . 
G 4 HOH A 16 249 249 HOH HOH . 
G 4 HOH A 17 250 250 HOH HOH . 
G 4 HOH A 18 251 251 HOH HOH . 
G 4 HOH A 19 252 252 HOH HOH . 
G 4 HOH A 20 253 253 HOH HOH . 
G 4 HOH A 21 254 254 HOH HOH . 
G 4 HOH A 22 255 255 HOH HOH . 
G 4 HOH A 23 256 256 HOH HOH . 
G 4 HOH A 24 258 258 HOH HOH . 
G 4 HOH A 25 259 259 HOH HOH . 
G 4 HOH A 26 260 260 HOH HOH . 
G 4 HOH A 27 261 261 HOH HOH . 
G 4 HOH A 28 262 262 HOH HOH . 
G 4 HOH A 29 263 263 HOH HOH . 
G 4 HOH A 30 264 264 HOH HOH . 
G 4 HOH A 31 265 265 HOH HOH . 
G 4 HOH A 32 266 266 HOH HOH . 
G 4 HOH A 33 267 267 HOH HOH . 
G 4 HOH A 34 268 268 HOH HOH . 
G 4 HOH A 35 269 269 HOH HOH . 
G 4 HOH A 36 270 270 HOH HOH . 
G 4 HOH A 37 271 271 HOH HOH . 
G 4 HOH A 38 272 272 HOH HOH . 
G 4 HOH A 39 273 273 HOH HOH . 
G 4 HOH A 40 274 274 HOH HOH . 
G 4 HOH A 41 275 275 HOH HOH . 
G 4 HOH A 42 276 276 HOH HOH . 
G 4 HOH A 43 277 277 HOH HOH . 
G 4 HOH A 44 278 278 HOH HOH . 
G 4 HOH A 45 279 279 HOH HOH . 
G 4 HOH A 46 280 280 HOH HOH . 
G 4 HOH A 47 281 281 HOH HOH . 
G 4 HOH A 48 282 282 HOH HOH . 
G 4 HOH A 49 283 283 HOH HOH . 
G 4 HOH A 50 284 284 HOH HOH . 
G 4 HOH A 51 285 285 HOH HOH . 
G 4 HOH A 52 286 286 HOH HOH . 
G 4 HOH A 53 287 287 HOH HOH . 
G 4 HOH A 54 288 288 HOH HOH . 
G 4 HOH A 55 289 289 HOH HOH . 
G 4 HOH A 56 290 290 HOH HOH . 
G 4 HOH A 57 291 291 HOH HOH . 
G 4 HOH A 58 292 292 HOH HOH . 
G 4 HOH A 59 293 293 HOH HOH . 
G 4 HOH A 60 294 294 HOH HOH . 
G 4 HOH A 61 295 295 HOH HOH . 
G 4 HOH A 62 296 296 HOH HOH . 
G 4 HOH A 63 297 297 HOH HOH . 
G 4 HOH A 64 298 298 HOH HOH . 
G 4 HOH A 65 299 299 HOH HOH . 
G 4 HOH A 66 300 300 HOH HOH . 
G 4 HOH A 67 301 301 HOH HOH . 
G 4 HOH A 68 302 302 HOH HOH . 
G 4 HOH A 69 303 303 HOH HOH . 
G 4 HOH A 70 304 304 HOH HOH . 
G 4 HOH A 71 305 305 HOH HOH . 
G 4 HOH A 72 306 306 HOH HOH . 
G 4 HOH A 73 307 307 HOH HOH . 
G 4 HOH A 74 308 308 HOH HOH . 
G 4 HOH A 75 309 309 HOH HOH . 
G 4 HOH A 76 310 310 HOH HOH . 
G 4 HOH A 77 311 311 HOH HOH . 
G 4 HOH A 78 312 312 HOH HOH . 
G 4 HOH A 79 313 313 HOH HOH . 
G 4 HOH A 80 314 314 HOH HOH . 
G 4 HOH A 81 315 315 HOH HOH . 
G 4 HOH A 82 316 316 HOH HOH . 
G 4 HOH A 83 317 317 HOH HOH . 
G 4 HOH A 84 318 318 HOH HOH . 
G 4 HOH A 85 319 319 HOH HOH . 
G 4 HOH A 86 320 320 HOH HOH . 
G 4 HOH A 87 321 321 HOH HOH . 
G 4 HOH A 88 322 322 HOH HOH . 
G 4 HOH A 89 323 323 HOH HOH . 
G 4 HOH A 90 324 324 HOH HOH . 
G 4 HOH A 91 325 325 HOH HOH . 
G 4 HOH A 92 326 326 HOH HOH . 
G 4 HOH A 93 327 327 HOH HOH . 
G 4 HOH A 94 328 328 HOH HOH . 
G 4 HOH A 95 329 329 HOH HOH . 
G 4 HOH A 96 330 330 HOH HOH . 
H 4 HOH B 1 240 240 HOH HOH . 
H 4 HOH B 2 241 247 HOH HOH . 
H 4 HOH B 3 242 257 HOH HOH . 
H 4 HOH B 4 243 230 HOH HOH . 
H 4 HOH B 5 244 231 HOH HOH . 
H 4 HOH B 6 245 232 HOH HOH . 
H 4 HOH B 7 246 233 HOH HOH . 
H 4 HOH B 8 247 234 HOH HOH . 
H 4 HOH B 9 248 235 HOH HOH . 
H 4 HOH B 10 249 236 HOH HOH . 
H 4 HOH B 11 250 237 HOH HOH . 
H 4 HOH B 12 251 238 HOH HOH . 
H 4 HOH B 13 252 239 HOH HOH . 
H 4 HOH B 14 253 240 HOH HOH . 
H 4 HOH B 15 254 241 HOH HOH . 
H 4 HOH B 16 255 242 HOH HOH . 
H 4 HOH B 17 256 243 HOH HOH . 
H 4 HOH B 18 257 244 HOH HOH . 
H 4 HOH B 19 258 245 HOH HOH . 
H 4 HOH B 20 259 246 HOH HOH . 
H 4 HOH B 21 260 247 HOH HOH . 
H 4 HOH B 22 261 248 HOH HOH . 
H 4 HOH B 23 262 249 HOH HOH . 
H 4 HOH B 24 263 250 HOH HOH . 
H 4 HOH B 25 264 251 HOH HOH . 
H 4 HOH B 26 265 252 HOH HOH . 
H 4 HOH B 27 266 253 HOH HOH . 
H 4 HOH B 28 267 254 HOH HOH . 
H 4 HOH B 29 268 255 HOH HOH . 
H 4 HOH B 30 269 256 HOH HOH . 
H 4 HOH B 31 270 257 HOH HOH . 
H 4 HOH B 32 271 258 HOH HOH . 
H 4 HOH B 33 272 259 HOH HOH . 
H 4 HOH B 34 273 260 HOH HOH . 
H 4 HOH B 35 274 261 HOH HOH . 
H 4 HOH B 36 275 262 HOH HOH . 
H 4 HOH B 37 276 263 HOH HOH . 
H 4 HOH B 38 277 264 HOH HOH . 
H 4 HOH B 39 278 265 HOH HOH . 
H 4 HOH B 40 279 266 HOH HOH . 
H 4 HOH B 41 280 267 HOH HOH . 
H 4 HOH B 42 281 268 HOH HOH . 
H 4 HOH B 43 282 269 HOH HOH . 
H 4 HOH B 44 283 270 HOH HOH . 
H 4 HOH B 45 284 271 HOH HOH . 
H 4 HOH B 46 285 272 HOH HOH . 
H 4 HOH B 47 286 273 HOH HOH . 
H 4 HOH B 48 287 274 HOH HOH . 
H 4 HOH B 49 288 276 HOH HOH . 
H 4 HOH B 50 289 277 HOH HOH . 
H 4 HOH B 51 290 278 HOH HOH . 
H 4 HOH B 52 291 279 HOH HOH . 
H 4 HOH B 53 292 280 HOH HOH . 
H 4 HOH B 54 293 281 HOH HOH . 
H 4 HOH B 55 294 282 HOH HOH . 
H 4 HOH B 56 295 283 HOH HOH . 
H 4 HOH B 57 296 284 HOH HOH . 
H 4 HOH B 58 297 285 HOH HOH . 
H 4 HOH B 59 298 286 HOH HOH . 
H 4 HOH B 60 299 287 HOH HOH . 
H 4 HOH B 61 300 288 HOH HOH . 
H 4 HOH B 62 301 289 HOH HOH . 
H 4 HOH B 63 302 290 HOH HOH . 
H 4 HOH B 64 303 291 HOH HOH . 
H 4 HOH B 65 304 292 HOH HOH . 
H 4 HOH B 66 305 293 HOH HOH . 
H 4 HOH B 67 306 294 HOH HOH . 
H 4 HOH B 68 307 295 HOH HOH . 
H 4 HOH B 69 308 296 HOH HOH . 
H 4 HOH B 70 309 297 HOH HOH . 
H 4 HOH B 71 310 298 HOH HOH . 
H 4 HOH B 72 311 299 HOH HOH . 
H 4 HOH B 73 312 300 HOH HOH . 
H 4 HOH B 74 313 301 HOH HOH . 
H 4 HOH B 75 314 302 HOH HOH . 
H 4 HOH B 76 315 303 HOH HOH . 
H 4 HOH B 77 316 304 HOH HOH . 
H 4 HOH B 78 317 305 HOH HOH . 
H 4 HOH B 79 318 306 HOH HOH . 
H 4 HOH B 80 319 307 HOH HOH . 
H 4 HOH B 81 320 308 HOH HOH . 
H 4 HOH B 82 321 309 HOH HOH . 
H 4 HOH B 83 322 310 HOH HOH . 
H 4 HOH B 84 323 311 HOH HOH . 
H 4 HOH B 85 324 312 HOH HOH . 
H 4 HOH B 86 325 313 HOH HOH . 
H 4 HOH B 87 326 314 HOH HOH . 
H 4 HOH B 88 327 315 HOH HOH . 
H 4 HOH B 89 328 316 HOH HOH . 
H 4 HOH B 90 329 317 HOH HOH . 
H 4 HOH B 91 330 318 HOH HOH . 
H 4 HOH B 92 331 319 HOH HOH . 
H 4 HOH B 93 332 320 HOH HOH . 
H 4 HOH B 94 333 321 HOH HOH . 
H 4 HOH B 95 334 322 HOH HOH . 
H 4 HOH B 96 335 323 HOH HOH . 
H 4 HOH B 97 336 324 HOH HOH . 
H 4 HOH B 98 337 325 HOH HOH . 
H 4 HOH B 99 338 326 HOH HOH . 
H 4 HOH B 100 339 327 HOH HOH . 
H 4 HOH B 101 340 328 HOH HOH . 
H 4 HOH B 102 341 329 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 U5P . . . E 2 24.727 19.272 -1.853 1 12.13 ? N1 U5P 230 B 1 
HETATM 2 C C2 U5P . . . E 2 24.508 20.411 -2.685 1 13.26 ? C2 U5P 230 B 1 
HETATM 3 N N3 U5P . . . E 2 23.353 21.124 -2.398 1 12.39 ? N3 U5P 230 B 1 
HETATM 4 C C4 U5P . . . E 2 22.419 20.866 -1.374 1 12.5 ? C4 U5P 230 B 1 
HETATM 5 C C5 U5P . . . E 2 22.692 19.684 -0.582 1 13.61 ? C5 U5P 230 B 1 
HETATM 6 C C6 U5P . . . E 2 23.743 18.899 -0.891 1 13.11 ? C6 U5P 230 B 1 
HETATM 7 O O2 U5P . . . E 2 25.283 20.719 -3.568 1 12.02 ? O2 U5P 230 B 1 
HETATM 8 O O4 U5P . . . E 2 21.496 21.629 -1.246 1 13.21 ? O4 U5P 230 B 1 
HETATM 9 C C1' U5P . . . E 2 25.951 18.451 -1.949 1 12.11 ? C1' U5P 230 B 1 
HETATM 10 C C2' U5P . . . E 2 26.257 17.774 -3.259 1 13.14 ? C2' U5P 230 B 1 
HETATM 11 O O2' U5P . . . E 2 25.635 16.51 -3.424 1 14.78 ? O2' U5P 230 B 1 
HETATM 12 C C3' U5P . . . E 2 27.748 17.71 -3.242 1 11.73 ? C3' U5P 230 B 1 
HETATM 13 C C4' U5P . . . E 2 28.154 19.022 -2.585 1 11.47 ? C4' U5P 230 B 1 
HETATM 14 O O3' U5P . . . E 2 28.219 16.588 -2.488 1 12.51 ? O3' U5P 230 B 1 
HETATM 15 O O4' U5P . . . E 2 27.059 19.282 -1.672 1 11.41 ? O4' U5P 230 B 1 
HETATM 16 C C5' U5P . . . E 2 28.385 20.234 -3.47 1 14.22 ? C5' U5P 230 B 1 
HETATM 17 O O5' U5P . . . E 2 29.49 19.916 -4.325 1 12.51 ? O5' U5P 230 B 1 
HETATM 18 P P U5P . . . E 2 30 20.893 -5.466 1 12.51 ? P U5P 230 B 1 
HETATM 19 O O1P U5P . . . E 2 28.86 21.547 -6.206 1 13.99 ? O1P U5P 230 B 1 
HETATM 20 O O2P U5P . . . E 2 30.796 20.008 -6.367 1 12.64 ? O2P U5P 230 B 1 
HETATM 21 O O3P U5P . . . E 2 31 21.941 -4.81 1 13.45 ? O3P U5P 230 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#