data_3G2H # _model_server_result.job_id rB6V4nrEfTBZJ5SvH53qLA _model_server_result.datetime_utc '2024-10-13 13:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":930}' # _entry.id 3G2H # _exptl.entry_id 3G2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G2H _cell.length_a 127.287 _cell.length_b 127.287 _cell.length_c 115.615 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.615 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 182 n n P O2P IMP sing 183 n n P O3P IMP sing 184 n n P O5' IMP sing 185 n n O2P HOP2 IMP sing 186 n n O3P HOP3 IMP sing 187 n n O5' C5' IMP sing 188 n n C5' C4' IMP sing 189 n n C5' "H5'1" IMP sing 190 n n C5' "H5'2" IMP sing 191 n n C4' O4' IMP sing 192 n n C4' C3' IMP sing 193 n n C4' H4' IMP sing 194 n n O4' C1' IMP sing 195 n n C3' O3' IMP sing 196 n n C3' C2' IMP sing 197 n n C3' H3' IMP sing 198 n n O3' HO3' IMP sing 199 n n C2' O2' IMP sing 200 n n C2' C1' IMP sing 201 n n C2' H2' IMP sing 202 n n O2' HO2' IMP sing 203 n n C1' N9 IMP sing 204 n n C1' H1' IMP sing 205 n n N9 C8 IMP sing 206 n y N9 C4 IMP sing 207 n y C8 N7 IMP doub 208 n y C8 H8 IMP sing 209 n n N7 C5 IMP sing 210 n y C5 C6 IMP sing 211 n n C5 C4 IMP doub 212 n y C6 O6 IMP doub 213 n n C6 N1 IMP sing 214 n n N1 C2 IMP sing 215 n n N1 HN1 IMP sing 216 n n C2 N3 IMP doub 217 n n C2 H2 IMP sing 218 n n N3 C4 IMP sing 219 n n # _atom_sites.entry_id 3G2H _atom_sites.fract_transf_matrix[1][1] 0.007856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KOT A 1 998 998 KOT KOT . C 3 DMS A 1 931 931 DMS DMS . D 4 IMP A 1 930 930 IMP IMP . E 5 HOH A 1 843 1 HOH HOH . E 5 HOH A 2 844 2 HOH HOH . E 5 HOH A 3 845 3 HOH HOH . E 5 HOH A 4 846 4 HOH HOH . E 5 HOH A 5 847 5 HOH HOH . E 5 HOH A 6 848 6 HOH HOH . E 5 HOH A 7 849 7 HOH HOH . E 5 HOH A 8 850 8 HOH HOH . E 5 HOH A 9 851 9 HOH HOH . E 5 HOH A 10 852 10 HOH HOH . E 5 HOH A 11 853 11 HOH HOH . E 5 HOH A 12 854 12 HOH HOH . E 5 HOH A 13 855 13 HOH HOH . E 5 HOH A 14 856 14 HOH HOH . E 5 HOH A 15 857 15 HOH HOH . E 5 HOH A 16 858 16 HOH HOH . E 5 HOH A 17 859 17 HOH HOH . E 5 HOH A 18 860 18 HOH HOH . E 5 HOH A 19 861 19 HOH HOH . E 5 HOH A 20 862 20 HOH HOH . E 5 HOH A 21 863 21 HOH HOH . E 5 HOH A 22 864 22 HOH HOH . E 5 HOH A 23 865 23 HOH HOH . E 5 HOH A 24 866 24 HOH HOH . E 5 HOH A 25 867 25 HOH HOH . E 5 HOH A 26 868 26 HOH HOH . E 5 HOH A 27 869 27 HOH HOH . E 5 HOH A 28 870 28 HOH HOH . E 5 HOH A 29 871 29 HOH HOH . E 5 HOH A 30 872 30 HOH HOH . E 5 HOH A 31 873 31 HOH HOH . E 5 HOH A 32 874 32 HOH HOH . E 5 HOH A 33 875 33 HOH HOH . E 5 HOH A 34 876 34 HOH HOH . E 5 HOH A 35 877 35 HOH HOH . E 5 HOH A 36 878 36 HOH HOH . E 5 HOH A 37 879 37 HOH HOH . E 5 HOH A 38 880 38 HOH HOH . E 5 HOH A 39 881 39 HOH HOH . E 5 HOH A 40 882 40 HOH HOH . E 5 HOH A 41 883 41 HOH HOH . E 5 HOH A 42 884 42 HOH HOH . E 5 HOH A 43 885 43 HOH HOH . E 5 HOH A 44 886 44 HOH HOH . E 5 HOH A 45 887 45 HOH HOH . E 5 HOH A 46 888 46 HOH HOH . E 5 HOH A 47 889 47 HOH HOH . E 5 HOH A 48 890 48 HOH HOH . E 5 HOH A 49 891 49 HOH HOH . E 5 HOH A 50 892 50 HOH HOH . E 5 HOH A 51 893 51 HOH HOH . E 5 HOH A 52 894 52 HOH HOH . E 5 HOH A 53 895 53 HOH HOH . E 5 HOH A 54 896 54 HOH HOH . E 5 HOH A 55 897 55 HOH HOH . E 5 HOH A 56 898 56 HOH HOH . E 5 HOH A 57 899 57 HOH HOH . E 5 HOH A 58 900 58 HOH HOH . E 5 HOH A 59 901 59 HOH HOH . E 5 HOH A 60 902 60 HOH HOH . E 5 HOH A 61 903 61 HOH HOH . E 5 HOH A 62 904 62 HOH HOH . E 5 HOH A 63 905 63 HOH HOH . E 5 HOH A 64 906 64 HOH HOH . E 5 HOH A 65 907 65 HOH HOH . E 5 HOH A 66 908 66 HOH HOH . E 5 HOH A 67 909 67 HOH HOH . E 5 HOH A 68 910 68 HOH HOH . E 5 HOH A 69 911 69 HOH HOH . E 5 HOH A 70 912 70 HOH HOH . E 5 HOH A 71 913 71 HOH HOH . E 5 HOH A 72 914 72 HOH HOH . E 5 HOH A 73 915 73 HOH HOH . E 5 HOH A 74 916 74 HOH HOH . E 5 HOH A 75 917 75 HOH HOH . E 5 HOH A 76 918 76 HOH HOH . E 5 HOH A 77 919 77 HOH HOH . E 5 HOH A 78 920 78 HOH HOH . E 5 HOH A 79 921 79 HOH HOH . E 5 HOH A 80 922 80 HOH HOH . E 5 HOH A 81 923 81 HOH HOH . E 5 HOH A 82 924 82 HOH HOH . E 5 HOH A 83 925 83 HOH HOH . E 5 HOH A 84 926 84 HOH HOH . E 5 HOH A 85 927 85 HOH HOH . E 5 HOH A 86 928 86 HOH HOH . E 5 HOH A 87 929 87 HOH HOH . E 5 HOH A 88 932 88 HOH HOH . E 5 HOH A 89 933 89 HOH HOH . E 5 HOH A 90 934 90 HOH HOH . E 5 HOH A 91 935 91 HOH HOH . E 5 HOH A 92 936 92 HOH HOH . E 5 HOH A 93 937 93 HOH HOH . E 5 HOH A 94 938 94 HOH HOH . E 5 HOH A 95 939 95 HOH HOH . E 5 HOH A 96 940 96 HOH HOH . E 5 HOH A 97 941 97 HOH HOH . E 5 HOH A 98 942 98 HOH HOH . E 5 HOH A 99 943 99 HOH HOH . E 5 HOH A 100 944 100 HOH HOH . E 5 HOH A 101 945 101 HOH HOH . E 5 HOH A 102 946 102 HOH HOH . E 5 HOH A 103 947 103 HOH HOH . E 5 HOH A 104 948 104 HOH HOH . E 5 HOH A 105 949 105 HOH HOH . E 5 HOH A 106 950 106 HOH HOH . E 5 HOH A 107 951 107 HOH HOH . E 5 HOH A 108 952 108 HOH HOH . E 5 HOH A 109 953 109 HOH HOH . E 5 HOH A 110 954 110 HOH HOH . E 5 HOH A 111 955 111 HOH HOH . E 5 HOH A 112 956 112 HOH HOH . E 5 HOH A 113 957 113 HOH HOH . E 5 HOH A 114 958 114 HOH HOH . E 5 HOH A 115 959 115 HOH HOH . E 5 HOH A 116 960 116 HOH HOH . E 5 HOH A 117 961 117 HOH HOH . E 5 HOH A 118 962 118 HOH HOH . E 5 HOH A 119 963 119 HOH HOH . E 5 HOH A 120 964 120 HOH HOH . E 5 HOH A 121 965 121 HOH HOH . E 5 HOH A 122 966 122 HOH HOH . E 5 HOH A 123 967 123 HOH HOH . E 5 HOH A 124 968 124 HOH HOH . E 5 HOH A 125 969 125 HOH HOH . E 5 HOH A 126 970 126 HOH HOH . E 5 HOH A 127 971 127 HOH HOH . E 5 HOH A 128 972 128 HOH HOH . E 5 HOH A 129 973 129 HOH HOH . E 5 HOH A 130 974 130 HOH HOH . E 5 HOH A 131 975 131 HOH HOH . E 5 HOH A 132 976 132 HOH HOH . E 5 HOH A 133 977 133 HOH HOH . E 5 HOH A 134 978 134 HOH HOH . E 5 HOH A 135 979 135 HOH HOH . E 5 HOH A 136 980 136 HOH HOH . E 5 HOH A 137 981 137 HOH HOH . E 5 HOH A 138 982 138 HOH HOH . E 5 HOH A 139 983 139 HOH HOH . E 5 HOH A 140 984 140 HOH HOH . E 5 HOH A 141 985 141 HOH HOH . E 5 HOH A 142 986 142 HOH HOH . E 5 HOH A 143 987 143 HOH HOH . E 5 HOH A 144 988 144 HOH HOH . E 5 HOH A 145 989 145 HOH HOH . E 5 HOH A 146 990 146 HOH HOH . E 5 HOH A 147 991 147 HOH HOH . E 5 HOH A 148 992 148 HOH HOH . E 5 HOH A 149 993 149 HOH HOH . E 5 HOH A 150 994 150 HOH HOH . E 5 HOH A 151 995 151 HOH HOH . E 5 HOH A 152 996 152 HOH HOH . E 5 HOH A 153 997 153 HOH HOH . E 5 HOH A 154 999 154 HOH HOH . E 5 HOH A 155 1000 155 HOH HOH . E 5 HOH A 156 1001 156 HOH HOH . E 5 HOH A 157 1002 157 HOH HOH . E 5 HOH A 158 1003 158 HOH HOH . E 5 HOH A 159 1004 159 HOH HOH . E 5 HOH A 160 1005 160 HOH HOH . E 5 HOH A 161 1006 161 HOH HOH . E 5 HOH A 162 1007 162 HOH HOH . E 5 HOH A 163 1008 163 HOH HOH . E 5 HOH A 164 1009 164 HOH HOH . E 5 HOH A 165 1010 165 HOH HOH . E 5 HOH A 166 1011 166 HOH HOH . E 5 HOH A 167 1012 167 HOH HOH . E 5 HOH A 168 1013 168 HOH HOH . E 5 HOH A 169 1014 169 HOH HOH . E 5 HOH A 170 1015 170 HOH HOH . E 5 HOH A 171 1016 171 HOH HOH . E 5 HOH A 172 1017 172 HOH HOH . E 5 HOH A 173 1018 173 HOH HOH . E 5 HOH A 174 1019 174 HOH HOH . E 5 HOH A 175 1020 175 HOH HOH . E 5 HOH A 176 1021 176 HOH HOH . E 5 HOH A 177 1022 177 HOH HOH . E 5 HOH A 178 1023 178 HOH HOH . E 5 HOH A 179 1024 179 HOH HOH . E 5 HOH A 180 1025 180 HOH HOH . E 5 HOH A 181 1026 181 HOH HOH . E 5 HOH A 182 1027 182 HOH HOH . E 5 HOH A 183 1028 183 HOH HOH . E 5 HOH A 184 1029 184 HOH HOH . E 5 HOH A 185 1030 185 HOH HOH . E 5 HOH A 186 1031 186 HOH HOH . E 5 HOH A 187 1032 187 HOH HOH . E 5 HOH A 188 1033 188 HOH HOH . E 5 HOH A 189 1034 189 HOH HOH . E 5 HOH A 190 1035 190 HOH HOH . E 5 HOH A 191 1036 191 HOH HOH . E 5 HOH A 192 1037 192 HOH HOH . E 5 HOH A 193 1038 193 HOH HOH . E 5 HOH A 194 1039 194 HOH HOH . E 5 HOH A 195 1040 195 HOH HOH . E 5 HOH A 196 1041 196 HOH HOH . E 5 HOH A 197 1042 197 HOH HOH . E 5 HOH A 198 1043 198 HOH HOH . E 5 HOH A 199 1044 199 HOH HOH . E 5 HOH A 200 1045 200 HOH HOH . E 5 HOH A 201 1046 201 HOH HOH . E 5 HOH A 202 1047 202 HOH HOH . E 5 HOH A 203 1048 203 HOH HOH . E 5 HOH A 204 1049 204 HOH HOH . E 5 HOH A 205 1050 205 HOH HOH . E 5 HOH A 206 1051 206 HOH HOH . E 5 HOH A 207 1052 207 HOH HOH . E 5 HOH A 208 1053 208 HOH HOH . E 5 HOH A 209 1054 209 HOH HOH . E 5 HOH A 210 1055 210 HOH HOH . E 5 HOH A 211 1056 211 HOH HOH . E 5 HOH A 212 1057 212 HOH HOH . E 5 HOH A 213 1058 213 HOH HOH . E 5 HOH A 214 1059 214 HOH HOH . E 5 HOH A 215 1060 215 HOH HOH . E 5 HOH A 216 1061 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . D 4 30.672 2.494 50.953 1 84.22 ? P IMP 930 A 1 HETATM 2 O O1P IMP . . . D 4 30.284 2.923 49.558 1 84.27 ? O1P IMP 930 A 1 HETATM 3 O O2P IMP . . . D 4 30.539 3.671 51.891 1 84.16 ? O2P IMP 930 A 1 HETATM 4 O O3P IMP . . . D 4 32.095 1.986 50.957 1 84.18 ? O3P IMP 930 A 1 HETATM 5 O O5' IMP . . . D 4 29.694 1.297 51.409 1 84.51 ? O5' IMP 930 A 1 HETATM 6 C C5' IMP . . . D 4 28.307 1.513 51.567 1 84.68 ? C5' IMP 930 A 1 HETATM 7 C C4' IMP . . . D 4 27.519 0.211 51.421 1 84.71 ? C4' IMP 930 A 1 HETATM 8 O O4' IMP . . . D 4 28.362 -0.918 51.228 1 84.6 ? O4' IMP 930 A 1 HETATM 9 C C3' IMP . . . D 4 26.675 -0.061 52.657 1 84.64 ? C3' IMP 930 A 1 HETATM 10 O O3' IMP . . . D 4 25.344 0.366 52.464 1 84.73 ? O3' IMP 930 A 1 HETATM 11 C C2' IMP . . . D 4 26.776 -1.563 52.861 1 84.63 ? C2' IMP 930 A 1 HETATM 12 O O2' IMP . . . D 4 25.644 -2.234 52.355 1 84.52 ? O2' IMP 930 A 1 HETATM 13 C C1' IMP . . . D 4 28.02 -1.989 52.093 1 84.65 ? C1' IMP 930 A 1 HETATM 14 N N9 IMP . . . D 4 29.12 -2.252 53.048 1 84.71 ? N9 IMP 930 A 1 HETATM 15 C C8 IMP . . . D 4 30.253 -1.492 53.212 1 84.75 ? C8 IMP 930 A 1 HETATM 16 N N7 IMP . . . D 4 31.02 -2.046 54.178 1 84.7 ? N7 IMP 930 A 1 HETATM 17 C C5 IMP . . . D 4 30.397 -3.15 54.642 1 84.76 ? C5 IMP 930 A 1 HETATM 18 C C6 IMP . . . D 4 30.742 -4.078 55.622 1 84.75 ? C6 IMP 930 A 1 HETATM 19 O O6 IMP . . . D 4 31.749 -3.902 56.306 1 84.75 ? O6 IMP 930 A 1 HETATM 20 N N1 IMP . . . D 4 29.893 -5.138 55.894 1 84.76 ? N1 IMP 930 A 1 HETATM 21 C C2 IMP . . . D 4 28.706 -5.27 55.193 1 84.76 ? C2 IMP 930 A 1 HETATM 22 N N3 IMP . . . D 4 28.371 -4.343 54.218 1 84.75 ? N3 IMP 930 A 1 HETATM 23 C C4 IMP . . . D 4 29.201 -3.298 53.943 1 84.8 ? C4 IMP 930 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #