data_3G2J # _model_server_result.job_id fiMgch6GoGAOvAyEe7sy2w _model_server_result.datetime_utc '2024-12-21 16:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":998}' # _entry.id 3G2J # _exptl.entry_id 3G2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.207 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(hydroxyacetyl)-beta-D-glucopyranosylamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G2J _cell.length_a 127.191 _cell.length_b 127.191 _cell.length_c 115.275 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 115.275 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C8 H15 N O7' _chem_comp.formula_weight 237.207 _chem_comp.id 9GP _chem_comp.mon_nstd_flag . _chem_comp.name N-(hydroxyacetyl)-beta-D-glucopyranosylamine _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms N-(hydroxyacetyl)-beta-D-glucosylamine;N-(hydroxyacetyl)-D-glucosylamine;N-(hydroxyacetyl)-glucosylamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 9GP sing 1 n n O2 HO2 9GP sing 2 n n C3 C2 9GP sing 3 n n C2 C1 9GP sing 4 n n C2 H2 9GP sing 5 n n O3 C3 9GP sing 6 n n C3 C4 9GP sing 7 n n C3 H3 9GP sing 8 n n O3 HO3 9GP sing 9 n n O4 C4 9GP sing 10 n n C4 C5 9GP sing 11 n n C4 H4 9GP sing 12 n n O4 HO4 9GP sing 13 n n C5 C6 9GP sing 14 n n C5 O5 9GP sing 15 n n C5 H5 9GP sing 16 n n O6 C6 9GP sing 17 n n C6 H61 9GP sing 18 n n C6 H62 9GP sing 19 n n O6 HO6 9GP sing 20 n n C1 O5 9GP sing 21 n n C1 N1 9GP sing 22 n n C1 H1 9GP sing 23 n n N1 C7 9GP sing 24 n n N1 HN1 9GP sing 25 n n C7 O7 9GP doub 26 n n C7 C9 9GP sing 27 n n O9 C9 9GP sing 28 n n C9 H9 9GP sing 29 n n C9 H9A 9GP sing 30 n n O9 HO9 9GP sing 31 n n # _atom_sites.entry_id 3G2J _atom_sites.fract_transf_matrix[1][1] 0.007862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9GP A 1 998 998 9GP 9GP . C 3 HOH A 1 843 1 HOH HOH . C 3 HOH A 2 844 2 HOH HOH . C 3 HOH A 3 845 3 HOH HOH . C 3 HOH A 4 846 4 HOH HOH . C 3 HOH A 5 847 5 HOH HOH . C 3 HOH A 6 848 6 HOH HOH . C 3 HOH A 7 849 7 HOH HOH . C 3 HOH A 8 850 8 HOH HOH . C 3 HOH A 9 851 9 HOH HOH . C 3 HOH A 10 852 10 HOH HOH . C 3 HOH A 11 853 11 HOH HOH . C 3 HOH A 12 854 12 HOH HOH . C 3 HOH A 13 855 13 HOH HOH . C 3 HOH A 14 856 14 HOH HOH . C 3 HOH A 15 857 15 HOH HOH . C 3 HOH A 16 858 16 HOH HOH . C 3 HOH A 17 859 17 HOH HOH . C 3 HOH A 18 860 18 HOH HOH . C 3 HOH A 19 861 19 HOH HOH . C 3 HOH A 20 862 20 HOH HOH . C 3 HOH A 21 863 21 HOH HOH . C 3 HOH A 22 864 22 HOH HOH . C 3 HOH A 23 865 23 HOH HOH . C 3 HOH A 24 866 24 HOH HOH . C 3 HOH A 25 867 25 HOH HOH . C 3 HOH A 26 868 26 HOH HOH . C 3 HOH A 27 869 27 HOH HOH . C 3 HOH A 28 870 28 HOH HOH . C 3 HOH A 29 871 29 HOH HOH . C 3 HOH A 30 872 30 HOH HOH . C 3 HOH A 31 873 31 HOH HOH . C 3 HOH A 32 874 32 HOH HOH . C 3 HOH A 33 875 33 HOH HOH . C 3 HOH A 34 876 34 HOH HOH . C 3 HOH A 35 877 35 HOH HOH . C 3 HOH A 36 878 36 HOH HOH . C 3 HOH A 37 879 37 HOH HOH . C 3 HOH A 38 880 38 HOH HOH . C 3 HOH A 39 881 39 HOH HOH . C 3 HOH A 40 882 40 HOH HOH . C 3 HOH A 41 883 41 HOH HOH . C 3 HOH A 42 884 42 HOH HOH . C 3 HOH A 43 885 43 HOH HOH . C 3 HOH A 44 886 44 HOH HOH . C 3 HOH A 45 887 45 HOH HOH . C 3 HOH A 46 888 46 HOH HOH . C 3 HOH A 47 889 47 HOH HOH . C 3 HOH A 48 890 48 HOH HOH . C 3 HOH A 49 891 49 HOH HOH . C 3 HOH A 50 892 50 HOH HOH . C 3 HOH A 51 893 51 HOH HOH . C 3 HOH A 52 894 52 HOH HOH . C 3 HOH A 53 895 53 HOH HOH . C 3 HOH A 54 896 54 HOH HOH . C 3 HOH A 55 897 55 HOH HOH . C 3 HOH A 56 898 56 HOH HOH . C 3 HOH A 57 899 57 HOH HOH . C 3 HOH A 58 900 58 HOH HOH . C 3 HOH A 59 901 59 HOH HOH . C 3 HOH A 60 902 60 HOH HOH . C 3 HOH A 61 903 61 HOH HOH . C 3 HOH A 62 904 62 HOH HOH . C 3 HOH A 63 905 63 HOH HOH . C 3 HOH A 64 906 64 HOH HOH . C 3 HOH A 65 907 65 HOH HOH . C 3 HOH A 66 908 66 HOH HOH . C 3 HOH A 67 909 67 HOH HOH . C 3 HOH A 68 910 68 HOH HOH . C 3 HOH A 69 911 69 HOH HOH . C 3 HOH A 70 912 70 HOH HOH . C 3 HOH A 71 913 71 HOH HOH . C 3 HOH A 72 914 72 HOH HOH . C 3 HOH A 73 915 73 HOH HOH . C 3 HOH A 74 916 74 HOH HOH . C 3 HOH A 75 917 75 HOH HOH . C 3 HOH A 76 918 76 HOH HOH . C 3 HOH A 77 919 77 HOH HOH . C 3 HOH A 78 920 78 HOH HOH . C 3 HOH A 79 921 79 HOH HOH . C 3 HOH A 80 922 80 HOH HOH . C 3 HOH A 81 923 81 HOH HOH . C 3 HOH A 82 924 82 HOH HOH . C 3 HOH A 83 925 83 HOH HOH . C 3 HOH A 84 926 84 HOH HOH . C 3 HOH A 85 927 85 HOH HOH . C 3 HOH A 86 928 86 HOH HOH . C 3 HOH A 87 929 87 HOH HOH . C 3 HOH A 88 930 88 HOH HOH . C 3 HOH A 89 931 89 HOH HOH . C 3 HOH A 90 932 90 HOH HOH . C 3 HOH A 91 933 91 HOH HOH . C 3 HOH A 92 934 92 HOH HOH . C 3 HOH A 93 935 93 HOH HOH . C 3 HOH A 94 936 94 HOH HOH . C 3 HOH A 95 937 95 HOH HOH . C 3 HOH A 96 938 96 HOH HOH . C 3 HOH A 97 939 97 HOH HOH . C 3 HOH A 98 940 98 HOH HOH . C 3 HOH A 99 941 99 HOH HOH . C 3 HOH A 100 942 100 HOH HOH . C 3 HOH A 101 943 101 HOH HOH . C 3 HOH A 102 944 102 HOH HOH . C 3 HOH A 103 945 103 HOH HOH . C 3 HOH A 104 946 104 HOH HOH . C 3 HOH A 105 947 105 HOH HOH . C 3 HOH A 106 948 106 HOH HOH . C 3 HOH A 107 949 107 HOH HOH . C 3 HOH A 108 950 108 HOH HOH . C 3 HOH A 109 951 109 HOH HOH . C 3 HOH A 110 952 110 HOH HOH . C 3 HOH A 111 953 111 HOH HOH . C 3 HOH A 112 954 112 HOH HOH . C 3 HOH A 113 955 113 HOH HOH . C 3 HOH A 114 956 114 HOH HOH . C 3 HOH A 115 957 115 HOH HOH . C 3 HOH A 116 958 116 HOH HOH . C 3 HOH A 117 959 117 HOH HOH . C 3 HOH A 118 960 118 HOH HOH . C 3 HOH A 119 961 119 HOH HOH . C 3 HOH A 120 962 120 HOH HOH . C 3 HOH A 121 963 121 HOH HOH . C 3 HOH A 122 964 122 HOH HOH . C 3 HOH A 123 965 123 HOH HOH . C 3 HOH A 124 966 124 HOH HOH . C 3 HOH A 125 967 125 HOH HOH . C 3 HOH A 126 968 126 HOH HOH . C 3 HOH A 127 969 127 HOH HOH . C 3 HOH A 128 970 128 HOH HOH . C 3 HOH A 129 971 129 HOH HOH . C 3 HOH A 130 972 130 HOH HOH . C 3 HOH A 131 973 131 HOH HOH . C 3 HOH A 132 974 132 HOH HOH . C 3 HOH A 133 975 133 HOH HOH . C 3 HOH A 134 976 134 HOH HOH . C 3 HOH A 135 977 135 HOH HOH . C 3 HOH A 136 978 136 HOH HOH . C 3 HOH A 137 979 137 HOH HOH . C 3 HOH A 138 980 138 HOH HOH . C 3 HOH A 139 981 139 HOH HOH . C 3 HOH A 140 982 140 HOH HOH . C 3 HOH A 141 983 141 HOH HOH . C 3 HOH A 142 984 142 HOH HOH . C 3 HOH A 143 985 143 HOH HOH . C 3 HOH A 144 986 144 HOH HOH . C 3 HOH A 145 987 145 HOH HOH . C 3 HOH A 146 988 146 HOH HOH . C 3 HOH A 147 989 147 HOH HOH . C 3 HOH A 148 990 148 HOH HOH . C 3 HOH A 149 991 149 HOH HOH . C 3 HOH A 150 992 150 HOH HOH . C 3 HOH A 151 993 151 HOH HOH . C 3 HOH A 152 994 152 HOH HOH . C 3 HOH A 153 995 153 HOH HOH . C 3 HOH A 154 996 154 HOH HOH . C 3 HOH A 155 997 155 HOH HOH . C 3 HOH A 156 999 156 HOH HOH . C 3 HOH A 157 1000 157 HOH HOH . C 3 HOH A 158 1001 158 HOH HOH . C 3 HOH A 159 1002 159 HOH HOH . C 3 HOH A 160 1003 160 HOH HOH . C 3 HOH A 161 1004 161 HOH HOH . C 3 HOH A 162 1005 162 HOH HOH . C 3 HOH A 163 1006 163 HOH HOH . C 3 HOH A 164 1007 164 HOH HOH . C 3 HOH A 165 1008 165 HOH HOH . C 3 HOH A 166 1009 166 HOH HOH . C 3 HOH A 167 1010 167 HOH HOH . C 3 HOH A 168 1011 168 HOH HOH . C 3 HOH A 169 1012 169 HOH HOH . C 3 HOH A 170 1013 170 HOH HOH . C 3 HOH A 171 1014 171 HOH HOH . C 3 HOH A 172 1015 172 HOH HOH . C 3 HOH A 173 1016 173 HOH HOH . C 3 HOH A 174 1017 174 HOH HOH . C 3 HOH A 175 1018 175 HOH HOH . C 3 HOH A 176 1019 176 HOH HOH . C 3 HOH A 177 1020 177 HOH HOH . C 3 HOH A 178 1021 178 HOH HOH . C 3 HOH A 179 1022 179 HOH HOH . C 3 HOH A 180 1023 180 HOH HOH . C 3 HOH A 181 1024 181 HOH HOH . C 3 HOH A 182 1025 182 HOH HOH . C 3 HOH A 183 1026 183 HOH HOH . C 3 HOH A 184 1027 184 HOH HOH . C 3 HOH A 185 1028 185 HOH HOH . C 3 HOH A 186 1029 186 HOH HOH . C 3 HOH A 187 1030 187 HOH HOH . C 3 HOH A 188 1031 188 HOH HOH . C 3 HOH A 189 1032 189 HOH HOH . C 3 HOH A 190 1033 190 HOH HOH . C 3 HOH A 191 1034 191 HOH HOH . C 3 HOH A 192 1035 192 HOH HOH . C 3 HOH A 193 1036 193 HOH HOH . C 3 HOH A 194 1037 194 HOH HOH . C 3 HOH A 195 1038 195 HOH HOH . C 3 HOH A 196 1039 196 HOH HOH . C 3 HOH A 197 1040 197 HOH HOH . C 3 HOH A 198 1041 198 HOH HOH . C 3 HOH A 199 1042 199 HOH HOH . C 3 HOH A 200 1043 200 HOH HOH . C 3 HOH A 201 1044 201 HOH HOH . C 3 HOH A 202 1045 202 HOH HOH . C 3 HOH A 203 1046 203 HOH HOH . C 3 HOH A 204 1047 204 HOH HOH . C 3 HOH A 205 1048 205 HOH HOH . C 3 HOH A 206 1049 206 HOH HOH . C 3 HOH A 207 1050 207 HOH HOH . C 3 HOH A 208 1051 208 HOH HOH . C 3 HOH A 209 1052 209 HOH HOH . C 3 HOH A 210 1053 210 HOH HOH . C 3 HOH A 211 1054 211 HOH HOH . C 3 HOH A 212 1055 212 HOH HOH . C 3 HOH A 213 1056 213 HOH HOH . C 3 HOH A 214 1057 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 9GP . . . B 2 33.75 24.317 25.906 1 28.44 ? O2 9GP 998 A 1 HETATM 2 C C2 9GP . . . B 2 33.563 22.915 26.13 1 29.75 ? C2 9GP 998 A 1 HETATM 3 C C3 9GP . . . B 2 32.359 22.371 25.336 1 27.56 ? C3 9GP 998 A 1 HETATM 4 O O3 9GP . . . B 2 32.614 22.467 23.931 1 25.64 ? O3 9GP 998 A 1 HETATM 5 C C4 9GP . . . B 2 32.102 20.905 25.712 1 27.51 ? C4 9GP 998 A 1 HETATM 6 O O4 9GP . . . B 2 30.93 20.457 25.05 1 29.09 ? O4 9GP 998 A 1 HETATM 7 C C5 9GP . . . B 2 31.948 20.738 27.238 1 27.71 ? C5 9GP 998 A 1 HETATM 8 C C6 9GP . . . B 2 31.78 19.265 27.659 1 26.88 ? C6 9GP 998 A 1 HETATM 9 O O6 9GP . . . B 2 32.867 18.482 27.154 1 25.86 ? O6 9GP 998 A 1 HETATM 10 O O5 9GP . . . B 2 33.132 21.219 27.901 1 28.56 ? O5 9GP 998 A 1 HETATM 11 C C1 9GP . . . B 2 33.407 22.632 27.637 1 30.73 ? C1 9GP 998 A 1 HETATM 12 N N1 9GP . . . B 2 34.671 23.032 28.312 1 33.37 ? N1 9GP 998 A 1 HETATM 13 C C7 9GP . . . B 2 34.611 23.621 29.504 1 35.42 ? C7 9GP 998 A 1 HETATM 14 O O7 9GP . . . B 2 33.56 23.851 30.094 1 36.75 ? O7 9GP 998 A 1 HETATM 15 C C9 9GP . . . B 2 35.954 24.012 30.124 1 36.7 ? C9 9GP 998 A 1 HETATM 16 O O9 9GP . . . B 2 37.035 23.277 29.555 1 38.7 ? O9 9GP 998 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #