data_3G2K # _model_server_result.job_id MUWX8kL5hfpubGKv0ajOZQ _model_server_result.datetime_utc '2024-12-21 13:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":998}' # _entry.id 3G2K # _exptl.entry_id 3G2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-beta-D-glucopyranosyl-4-naphthalen-2-yl-1H-1,2,3-triazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G2K _cell.length_a 128.769 _cell.length_b 128.769 _cell.length_c 116.723 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.723 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C18 H19 N3 O5' _chem_comp.formula_weight 357.361 _chem_comp.id SKY _chem_comp.mon_nstd_flag . _chem_comp.name 1-beta-D-glucopyranosyl-4-naphthalen-2-yl-1H-1,2,3-triazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 SKY doub 337 n y C10 C11 SKY sing 338 n y C10 H10 SKY sing 339 n n C16 C11 SKY doub 340 n y C11 C12 SKY sing 341 n y C12 C13 SKY doub 342 n y C12 H12 SKY sing 343 n n C14 C13 SKY sing 344 n y C13 H13 SKY sing 345 n n C15 C14 SKY doub 346 n y C14 H14 SKY sing 347 n n C16 C15 SKY sing 348 n y C15 H15 SKY sing 349 n n C17 C16 SKY sing 350 n y C18 C17 SKY doub 351 n y C17 H17 SKY sing 352 n n C18 C9 SKY sing 353 n y C18 H18 SKY sing 354 n n C8 C9 SKY sing 355 n y C7 C8 SKY doub 356 n y C8 N3 SKY sing 357 n y N1 C7 SKY sing 358 n y C7 H7 SKY sing 359 n n N2 N3 SKY doub 360 n y N1 N2 SKY sing 361 n y C1 N1 SKY sing 362 n n C2 C1 SKY sing 363 n n C1 O5 SKY sing 364 n n C1 H1 SKY sing 365 n n C5 O5 SKY sing 366 n n C4 C5 SKY sing 367 n n C5 C6 SKY sing 368 n n C5 H5 SKY sing 369 n n O6 C6 SKY sing 370 n n C6 H6 SKY sing 371 n n C6 H6A SKY sing 372 n n O6 HO6 SKY sing 373 n n O4 C4 SKY sing 374 n n C3 C4 SKY sing 375 n n C4 H4 SKY sing 376 n n O4 HO4 SKY sing 377 n n O3 C3 SKY sing 378 n n C3 C2 SKY sing 379 n n C3 H3 SKY sing 380 n n O3 HO3 SKY sing 381 n n O2 C2 SKY sing 382 n n C2 H2 SKY sing 383 n n O2 HO2 SKY sing 384 n n # _atom_sites.entry_id 3G2K _atom_sites.fract_transf_matrix[1][1] 0.007766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SKY A 1 998 998 SKY SKY . C 3 HOH A 1 843 1 HOH HOH . C 3 HOH A 2 844 2 HOH HOH . C 3 HOH A 3 845 3 HOH HOH . C 3 HOH A 4 846 4 HOH HOH . C 3 HOH A 5 847 5 HOH HOH . C 3 HOH A 6 848 6 HOH HOH . C 3 HOH A 7 849 7 HOH HOH . C 3 HOH A 8 850 8 HOH HOH . C 3 HOH A 9 851 9 HOH HOH . C 3 HOH A 10 852 10 HOH HOH . C 3 HOH A 11 853 11 HOH HOH . C 3 HOH A 12 854 12 HOH HOH . C 3 HOH A 13 855 13 HOH HOH . C 3 HOH A 14 856 14 HOH HOH . C 3 HOH A 15 857 15 HOH HOH . C 3 HOH A 16 858 16 HOH HOH . C 3 HOH A 17 859 17 HOH HOH . C 3 HOH A 18 860 18 HOH HOH . C 3 HOH A 19 861 19 HOH HOH . C 3 HOH A 20 862 20 HOH HOH . C 3 HOH A 21 863 21 HOH HOH . C 3 HOH A 22 864 22 HOH HOH . C 3 HOH A 23 865 23 HOH HOH . C 3 HOH A 24 866 24 HOH HOH . C 3 HOH A 25 867 25 HOH HOH . C 3 HOH A 26 868 26 HOH HOH . C 3 HOH A 27 869 27 HOH HOH . C 3 HOH A 28 870 28 HOH HOH . C 3 HOH A 29 871 29 HOH HOH . C 3 HOH A 30 872 30 HOH HOH . C 3 HOH A 31 873 31 HOH HOH . C 3 HOH A 32 874 32 HOH HOH . C 3 HOH A 33 875 33 HOH HOH . C 3 HOH A 34 876 34 HOH HOH . C 3 HOH A 35 877 35 HOH HOH . C 3 HOH A 36 878 36 HOH HOH . C 3 HOH A 37 879 37 HOH HOH . C 3 HOH A 38 880 38 HOH HOH . C 3 HOH A 39 881 39 HOH HOH . C 3 HOH A 40 882 40 HOH HOH . C 3 HOH A 41 883 41 HOH HOH . C 3 HOH A 42 884 42 HOH HOH . C 3 HOH A 43 885 43 HOH HOH . C 3 HOH A 44 886 44 HOH HOH . C 3 HOH A 45 887 45 HOH HOH . C 3 HOH A 46 888 46 HOH HOH . C 3 HOH A 47 889 47 HOH HOH . C 3 HOH A 48 890 48 HOH HOH . C 3 HOH A 49 891 49 HOH HOH . C 3 HOH A 50 892 50 HOH HOH . C 3 HOH A 51 893 51 HOH HOH . C 3 HOH A 52 894 52 HOH HOH . C 3 HOH A 53 895 53 HOH HOH . C 3 HOH A 54 896 54 HOH HOH . C 3 HOH A 55 897 55 HOH HOH . C 3 HOH A 56 898 56 HOH HOH . C 3 HOH A 57 899 57 HOH HOH . C 3 HOH A 58 900 58 HOH HOH . C 3 HOH A 59 901 59 HOH HOH . C 3 HOH A 60 902 60 HOH HOH . C 3 HOH A 61 903 61 HOH HOH . C 3 HOH A 62 904 62 HOH HOH . C 3 HOH A 63 905 63 HOH HOH . C 3 HOH A 64 906 64 HOH HOH . C 3 HOH A 65 907 65 HOH HOH . C 3 HOH A 66 908 66 HOH HOH . C 3 HOH A 67 909 67 HOH HOH . C 3 HOH A 68 910 68 HOH HOH . C 3 HOH A 69 911 69 HOH HOH . C 3 HOH A 70 912 70 HOH HOH . C 3 HOH A 71 913 71 HOH HOH . C 3 HOH A 72 914 72 HOH HOH . C 3 HOH A 73 915 73 HOH HOH . C 3 HOH A 74 916 74 HOH HOH . C 3 HOH A 75 917 75 HOH HOH . C 3 HOH A 76 918 76 HOH HOH . C 3 HOH A 77 919 77 HOH HOH . C 3 HOH A 78 920 78 HOH HOH . C 3 HOH A 79 921 79 HOH HOH . C 3 HOH A 80 922 80 HOH HOH . C 3 HOH A 81 923 81 HOH HOH . C 3 HOH A 82 924 82 HOH HOH . C 3 HOH A 83 925 83 HOH HOH . C 3 HOH A 84 926 84 HOH HOH . C 3 HOH A 85 927 85 HOH HOH . C 3 HOH A 86 928 86 HOH HOH . C 3 HOH A 87 929 87 HOH HOH . C 3 HOH A 88 930 88 HOH HOH . C 3 HOH A 89 931 89 HOH HOH . C 3 HOH A 90 932 90 HOH HOH . C 3 HOH A 91 933 91 HOH HOH . C 3 HOH A 92 934 92 HOH HOH . C 3 HOH A 93 935 93 HOH HOH . C 3 HOH A 94 936 94 HOH HOH . C 3 HOH A 95 937 95 HOH HOH . C 3 HOH A 96 938 96 HOH HOH . C 3 HOH A 97 939 97 HOH HOH . C 3 HOH A 98 940 98 HOH HOH . C 3 HOH A 99 941 99 HOH HOH . C 3 HOH A 100 942 100 HOH HOH . C 3 HOH A 101 943 101 HOH HOH . C 3 HOH A 102 944 102 HOH HOH . C 3 HOH A 103 945 103 HOH HOH . C 3 HOH A 104 946 104 HOH HOH . C 3 HOH A 105 947 105 HOH HOH . C 3 HOH A 106 948 106 HOH HOH . C 3 HOH A 107 949 107 HOH HOH . C 3 HOH A 108 950 108 HOH HOH . C 3 HOH A 109 951 109 HOH HOH . C 3 HOH A 110 952 110 HOH HOH . C 3 HOH A 111 953 111 HOH HOH . C 3 HOH A 112 954 112 HOH HOH . C 3 HOH A 113 955 113 HOH HOH . C 3 HOH A 114 956 114 HOH HOH . C 3 HOH A 115 957 115 HOH HOH . C 3 HOH A 116 958 116 HOH HOH . C 3 HOH A 117 959 117 HOH HOH . C 3 HOH A 118 960 118 HOH HOH . C 3 HOH A 119 961 119 HOH HOH . C 3 HOH A 120 962 120 HOH HOH . C 3 HOH A 121 963 121 HOH HOH . C 3 HOH A 122 964 122 HOH HOH . C 3 HOH A 123 965 123 HOH HOH . C 3 HOH A 124 966 124 HOH HOH . C 3 HOH A 125 967 125 HOH HOH . C 3 HOH A 126 968 126 HOH HOH . C 3 HOH A 127 969 127 HOH HOH . C 3 HOH A 128 970 128 HOH HOH . C 3 HOH A 129 971 129 HOH HOH . C 3 HOH A 130 972 130 HOH HOH . C 3 HOH A 131 973 131 HOH HOH . C 3 HOH A 132 974 132 HOH HOH . C 3 HOH A 133 975 133 HOH HOH . C 3 HOH A 134 976 134 HOH HOH . C 3 HOH A 135 977 135 HOH HOH . C 3 HOH A 136 978 136 HOH HOH . C 3 HOH A 137 979 137 HOH HOH . C 3 HOH A 138 980 138 HOH HOH . C 3 HOH A 139 981 139 HOH HOH . C 3 HOH A 140 982 140 HOH HOH . C 3 HOH A 141 983 141 HOH HOH . C 3 HOH A 142 984 142 HOH HOH . C 3 HOH A 143 985 143 HOH HOH . C 3 HOH A 144 986 144 HOH HOH . C 3 HOH A 145 987 145 HOH HOH . C 3 HOH A 146 988 146 HOH HOH . C 3 HOH A 147 989 147 HOH HOH . C 3 HOH A 148 990 148 HOH HOH . C 3 HOH A 149 991 149 HOH HOH . C 3 HOH A 150 992 150 HOH HOH . C 3 HOH A 151 993 151 HOH HOH . C 3 HOH A 152 994 152 HOH HOH . C 3 HOH A 153 995 153 HOH HOH . C 3 HOH A 154 996 154 HOH HOH . C 3 HOH A 155 997 155 HOH HOH . C 3 HOH A 156 999 156 HOH HOH . C 3 HOH A 157 1000 157 HOH HOH . C 3 HOH A 158 1001 158 HOH HOH . C 3 HOH A 159 1002 159 HOH HOH . C 3 HOH A 160 1003 160 HOH HOH . C 3 HOH A 161 1004 161 HOH HOH . C 3 HOH A 162 1005 162 HOH HOH . C 3 HOH A 163 1006 163 HOH HOH . C 3 HOH A 164 1007 164 HOH HOH . C 3 HOH A 165 1008 165 HOH HOH . C 3 HOH A 166 1009 166 HOH HOH . C 3 HOH A 167 1010 167 HOH HOH . C 3 HOH A 168 1011 168 HOH HOH . C 3 HOH A 169 1012 169 HOH HOH . C 3 HOH A 170 1013 170 HOH HOH . C 3 HOH A 171 1014 171 HOH HOH . C 3 HOH A 172 1015 172 HOH HOH . C 3 HOH A 173 1016 173 HOH HOH . C 3 HOH A 174 1017 174 HOH HOH . C 3 HOH A 175 1018 175 HOH HOH . C 3 HOH A 176 1019 176 HOH HOH . C 3 HOH A 177 1020 177 HOH HOH . C 3 HOH A 178 1021 178 HOH HOH . C 3 HOH A 179 1022 179 HOH HOH . C 3 HOH A 180 1023 180 HOH HOH . C 3 HOH A 181 1024 181 HOH HOH . C 3 HOH A 182 1025 182 HOH HOH . C 3 HOH A 183 1026 183 HOH HOH . C 3 HOH A 184 1027 184 HOH HOH . C 3 HOH A 185 1028 185 HOH HOH . C 3 HOH A 186 1029 186 HOH HOH . C 3 HOH A 187 1030 187 HOH HOH . C 3 HOH A 188 1031 188 HOH HOH . C 3 HOH A 189 1032 189 HOH HOH . C 3 HOH A 190 1033 190 HOH HOH . C 3 HOH A 191 1034 191 HOH HOH . C 3 HOH A 192 1035 192 HOH HOH . C 3 HOH A 193 1036 193 HOH HOH . C 3 HOH A 194 1037 194 HOH HOH . C 3 HOH A 195 1038 195 HOH HOH . C 3 HOH A 196 1039 196 HOH HOH . C 3 HOH A 197 1040 197 HOH HOH . C 3 HOH A 198 1041 198 HOH HOH . C 3 HOH A 199 1042 199 HOH HOH . C 3 HOH A 200 1043 200 HOH HOH . C 3 HOH A 201 1044 201 HOH HOH . C 3 HOH A 202 1045 202 HOH HOH . C 3 HOH A 203 1046 203 HOH HOH . C 3 HOH A 204 1047 204 HOH HOH . C 3 HOH A 205 1048 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 SKY . . . B 2 36.306 25.351 32.486 1 37.53 ? C10 SKY 998 A 1 HETATM 2 C C11 SKY . . . B 2 37.431 25.757 33.212 1 37.64 ? C11 SKY 998 A 1 HETATM 3 C C12 SKY . . . B 2 37.285 26.361 34.467 1 37.92 ? C12 SKY 998 A 1 HETATM 4 C C13 SKY . . . B 2 38.418 26.764 35.185 1 37.83 ? C13 SKY 998 A 1 HETATM 5 C C14 SKY . . . B 2 39.696 26.569 34.652 1 37.62 ? C14 SKY 998 A 1 HETATM 6 C C15 SKY . . . B 2 39.84 25.966 33.399 1 37.89 ? C15 SKY 998 A 1 HETATM 7 C C16 SKY . . . B 2 38.71 25.558 32.68 1 37.21 ? C16 SKY 998 A 1 HETATM 8 C C17 SKY . . . B 2 38.852 24.957 31.427 1 37.44 ? C17 SKY 998 A 1 HETATM 9 C C18 SKY . . . B 2 37.726 24.551 30.705 1 37.45 ? C18 SKY 998 A 1 HETATM 10 C C9 SKY . . . B 2 36.443 24.746 31.228 1 36.92 ? C9 SKY 998 A 1 HETATM 11 C C8 SKY . . . B 2 35.3 24.349 30.518 1 37.27 ? C8 SKY 998 A 1 HETATM 12 C C7 SKY . . . B 2 35.211 23.679 29.361 1 35.78 ? C7 SKY 998 A 1 HETATM 13 N N3 SKY . . . B 2 34.038 24.574 30.891 1 36.49 ? N3 SKY 998 A 1 HETATM 14 N N2 SKY . . . B 2 33.266 24.101 30.052 1 35.77 ? N2 SKY 998 A 1 HETATM 15 N N1 SKY . . . B 2 33.899 23.574 29.13 1 34.49 ? N1 SKY 998 A 1 HETATM 16 C C1 SKY . . . B 2 33.166 22.923 28.019 1 33.34 ? C1 SKY 998 A 1 HETATM 17 O O5 SKY . . . B 2 33.214 21.489 28.264 1 30.24 ? O5 SKY 998 A 1 HETATM 18 C C5 SKY . . . B 2 32.155 20.841 27.514 1 30.41 ? C5 SKY 998 A 1 HETATM 19 C C6 SKY . . . B 2 32.112 19.373 27.956 1 28.75 ? C6 SKY 998 A 1 HETATM 20 O O6 SKY . . . B 2 33.276 18.684 27.48 1 27.98 ? O6 SKY 998 A 1 HETATM 21 C C4 SKY . . . B 2 32.368 21.009 25.982 1 30.92 ? C4 SKY 998 A 1 HETATM 22 O O4 SKY . . . B 2 31.201 20.558 25.298 1 31.19 ? O4 SKY 998 A 1 HETATM 23 C C3 SKY . . . B 2 32.663 22.474 25.585 1 31.75 ? C3 SKY 998 A 1 HETATM 24 O O3 SKY . . . B 2 33.171 22.52 24.243 1 30.52 ? O3 SKY 998 A 1 HETATM 25 C C2 SKY . . . B 2 33.658 23.129 26.573 1 32.49 ? C2 SKY 998 A 1 HETATM 26 O O2 SKY . . . B 2 33.824 24.524 26.301 1 33.13 ? O2 SKY 998 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #