data_3G2P # _model_server_result.job_id NEZo-VN9WLofHOfKsRNCAA _model_server_result.datetime_utc '2024-10-19 07:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3G2P # _exptl.entry_id 3G2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.19 _cell.angle_gamma 90 _cell.entry_id 3G2P _cell.length_a 126.469 _cell.length_b 72.451 _cell.length_c 75.246 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3G2P _atom_sites.fract_transf_matrix[1][1] 0.007907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 500 500 SAH SAH . D 2 SAH B 1 500 500 SAH SAH . E 3 HOH A 1 281 1 HOH HOH . E 3 HOH A 2 282 4 HOH HOH . E 3 HOH A 3 283 8 HOH HOH . E 3 HOH A 4 284 9 HOH HOH . E 3 HOH A 5 285 10 HOH HOH . E 3 HOH A 6 286 11 HOH HOH . E 3 HOH A 7 287 12 HOH HOH . F 3 HOH B 1 281 3 HOH HOH . F 3 HOH B 2 282 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 25.455 60.699 31.114 1 54.57 ? N SAH 500 A 1 HETATM 2 C CA SAH . . . C 2 26.314 59.785 30.298 1 54.68 ? CA SAH 500 A 1 HETATM 3 C CB SAH . . . C 2 25.639 58.472 29.895 1 54.08 ? CB SAH 500 A 1 HETATM 4 C CG SAH . . . C 2 24.259 58.586 29.262 1 53.01 ? CG SAH 500 A 1 HETATM 5 S SD SAH . . . C 2 23.843 57.119 28.283 1 51.41 ? SD SAH 500 A 1 HETATM 6 C C SAH . . . C 2 26.835 60.503 29.056 1 55.35 ? C SAH 500 A 1 HETATM 7 O O SAH . . . C 2 26.607 61.72 28.893 1 55.16 ? O SAH 500 A 1 HETATM 8 O OXT SAH . . . C 2 27.489 59.863 28.206 1 55.89 ? OXT SAH 500 A 1 HETATM 9 C C5' SAH . . . C 2 22.452 56.489 29.257 1 49.68 ? C5' SAH 500 A 1 HETATM 10 C C4' SAH . . . C 2 22.843 55.821 30.563 1 46.56 ? C4' SAH 500 A 1 HETATM 11 O O4' SAH . . . C 2 21.687 55.712 31.353 1 46.72 ? O4' SAH 500 A 1 HETATM 12 C C3' SAH . . . C 2 23.337 54.405 30.362 1 45.36 ? C3' SAH 500 A 1 HETATM 13 O O3' SAH . . . C 2 24.59 54.353 30.982 1 44.72 ? O3' SAH 500 A 1 HETATM 14 C C2' SAH . . . C 2 22.329 53.491 31.06 1 44.85 ? C2' SAH 500 A 1 HETATM 15 O O2' SAH . . . C 2 22.916 52.416 31.764 1 42.41 ? O2' SAH 500 A 1 HETATM 16 C C1' SAH . . . C 2 21.649 54.451 32.012 1 44.36 ? C1' SAH 500 A 1 HETATM 17 N N9 SAH . . . C 2 20.25 54.152 32.367 1 43.44 ? N9 SAH 500 A 1 HETATM 18 C C8 SAH . . . C 2 19.254 53.718 31.548 1 43.23 ? C8 SAH 500 A 1 HETATM 19 N N7 SAH . . . C 2 18.103 53.601 32.252 1 42.55 ? N7 SAH 500 A 1 HETATM 20 C C5 SAH . . . C 2 18.352 53.977 33.519 1 43.52 ? C5 SAH 500 A 1 HETATM 21 C C6 SAH . . . C 2 17.546 54.063 34.651 1 43.73 ? C6 SAH 500 A 1 HETATM 22 N N6 SAH . . . C 2 16.26 53.72 34.571 1 43.48 ? N6 SAH 500 A 1 HETATM 23 N N1 SAH . . . C 2 18.099 54.497 35.851 1 43.6 ? N1 SAH 500 A 1 HETATM 24 C C2 SAH . . . C 2 19.43 54.865 35.937 1 42.84 ? C2 SAH 500 A 1 HETATM 25 N N3 SAH . . . C 2 20.217 54.778 34.803 1 43.51 ? N3 SAH 500 A 1 HETATM 26 C C4 SAH . . . C 2 19.698 54.336 33.613 1 43.74 ? C4 SAH 500 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #