data_3G38 # _model_server_result.job_id 9G4FHVaCGs9M49RKvP5ZkA _model_server_result.datetime_utc '2024-10-19 08:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":266}' # _entry.id 3G38 # _exptl.entry_id 3G38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G38 _cell.length_a 79.96 _cell.length_b 107.15 _cell.length_c 44.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N3 DC 1 G DC 1 1_555 C N1 DG 8 K DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 G DC 1 1_555 C O6 DG 8 K DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 G DC 1 1_555 C N2 DG 8 K DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 G DC 2 1_555 C N1 DG 7 K DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 G DC 2 1_555 C O6 DG 7 K DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 G DC 2 1_555 C N2 DG 7 K DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 3 G DT 3 1_555 C N1 DA 6 K DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 3 G DT 3 1_555 C N6 DA 6 K DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 4 G DG 4 1_555 C N3 DC 5 K DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 4 G DG 4 1_555 C O2 DC 5 K DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 4 G DG 4 1_555 C N4 DC 5 K DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DU-DC MISPAIR' hydrog12 B O4 DU 5 G DU 5 1_555 C N4 DC 3 K DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DU-DG MISPAIR' hydrog13 B O2 DU 5 G DU 5 1_555 C N2 DG 4 K DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog14 B O6 DG 6 G DG 6 1_555 C N1 DG 2 K DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog15 B N1 DG 6 G DG 6 1_555 C N3 DC 3 K DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog16 B N4 DC 7 G DC 7 1_555 C O6 DG 2 K DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 8 G DG 8 1_555 C N3 DC 1 K DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 8 G DG 8 1_555 C O2 DC 1 K DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 8 G DG 8 1_555 C N4 DC 1 K DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 312 n n C1 C2 GOL sing 313 n n C1 H11 GOL sing 314 n n C1 H12 GOL sing 315 n n O1 HO1 GOL sing 316 n n C2 O2 GOL sing 317 n n C2 C3 GOL sing 318 n n C2 H2 GOL sing 319 n n O2 HO2 GOL sing 320 n n C3 O3 GOL sing 321 n n C3 H31 GOL sing 322 n n C3 H32 GOL sing 323 n n O3 HO3 GOL sing 324 n n # _atom_sites.entry_id 3G38 _atom_sites.fract_transf_matrix[1][1] 0.012506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 266 1 GOL GOL . E 4 GOL A 1 267 1 GOL GOL . F 4 GOL A 1 268 1 GOL GOL . G 4 GOL A 1 269 1 GOL GOL . H 4 GOL A 1 270 1 GOL GOL . I 4 GOL A 1 271 1 GOL GOL . J 5 HOH A 1 272 1 HOH HOH . J 5 HOH A 2 273 4 HOH HOH . J 5 HOH A 3 274 5 HOH HOH . J 5 HOH A 4 275 6 HOH HOH . J 5 HOH A 5 276 8 HOH HOH . J 5 HOH A 6 277 9 HOH HOH . J 5 HOH A 7 278 11 HOH HOH . J 5 HOH A 8 279 16 HOH HOH . J 5 HOH A 9 280 17 HOH HOH . J 5 HOH A 10 281 18 HOH HOH . J 5 HOH A 11 282 19 HOH HOH . J 5 HOH A 12 283 20 HOH HOH . J 5 HOH A 13 284 21 HOH HOH . J 5 HOH A 14 285 24 HOH HOH . J 5 HOH A 15 286 25 HOH HOH . J 5 HOH A 16 287 28 HOH HOH . J 5 HOH A 17 288 2 HOH HOH . J 5 HOH A 18 289 3 HOH HOH . J 5 HOH A 19 290 4 HOH HOH . J 5 HOH A 20 291 5 HOH HOH . J 5 HOH A 21 292 7 HOH HOH . J 5 HOH A 22 293 8 HOH HOH . J 5 HOH A 23 294 9 HOH HOH . J 5 HOH A 24 295 10 HOH HOH . J 5 HOH A 25 296 11 HOH HOH . J 5 HOH A 26 297 14 HOH HOH . J 5 HOH A 27 298 15 HOH HOH . J 5 HOH A 28 299 16 HOH HOH . J 5 HOH A 29 300 18 HOH HOH . J 5 HOH A 30 301 19 HOH HOH . J 5 HOH A 31 302 20 HOH HOH . J 5 HOH A 32 303 21 HOH HOH . J 5 HOH A 33 304 22 HOH HOH . J 5 HOH A 34 305 23 HOH HOH . J 5 HOH A 35 306 25 HOH HOH . J 5 HOH A 36 307 1 HOH HOH . J 5 HOH A 37 308 2 HOH HOH . J 5 HOH A 38 309 3 HOH HOH . J 5 HOH A 39 310 4 HOH HOH . J 5 HOH A 40 311 5 HOH HOH . J 5 HOH A 41 312 15 HOH HOH . J 5 HOH A 42 313 16 HOH HOH . J 5 HOH A 43 314 18 HOH HOH . J 5 HOH A 44 315 20 HOH HOH . K 5 HOH G 1 11 6 HOH HOH . L 5 HOH K 1 13 13 HOH HOH . L 5 HOH K 2 14 14 HOH HOH . L 5 HOH K 3 29 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -7.744 -28.862 1.203 1 21.79 ? C1 GOL 266 A 1 HETATM 2 O O1 GOL . . . D 4 -6.987 -27.701 1.496 1 21.79 ? O1 GOL 266 A 1 HETATM 3 C C2 GOL . . . D 4 -7.148 -30.108 1.88 1 21.79 ? C2 GOL 266 A 1 HETATM 4 O O2 GOL . . . D 4 -7.433 -30.066 3.265 1 21.79 ? O2 GOL 266 A 1 HETATM 5 C C3 GOL . . . D 4 -7.672 -31.405 1.24 1 21.79 ? C3 GOL 266 A 1 HETATM 6 O O3 GOL . . . D 4 -7.76 -32.465 2.17 1 21.79 ? O3 GOL 266 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #