data_3G3V # _model_server_result.job_id PWmX28DkGHWHMC8ux5EfFQ _model_server_result.datetime_utc '2024-11-22 11:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":169}' # _entry.id 3G3V # _exptl.entry_id 3G3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G3V _cell.length_a 60.868 _cell.length_b 60.868 _cell.length_c 96.818 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 131 A CYS 131 1_555 B S1 MTN . A MTN 801 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.001 ? covale ? covale2 A SG CYS 131 A CYS 131 1_555 B S1 MTN . A MTN 801 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 131 n n C1 C2 HED sing 132 n n C1 H11 HED sing 133 n n C1 H12 HED sing 134 n n O1 HO1 HED sing 135 n n C2 S3 HED sing 136 n n C2 H21 HED sing 137 n n C2 H22 HED sing 138 n n S3 S4 HED sing 139 n n S4 C5 HED sing 140 n n C5 C6 HED sing 141 n n C5 H51 HED sing 142 n n C5 H52 HED sing 143 n n C6 O6 HED sing 144 n n C6 H61 HED sing 145 n n C6 H62 HED sing 146 n n O6 HO6 HED sing 147 n n # _atom_sites.entry_id 3G3V _atom_sites.fract_transf_matrix[1][1] 0.016429 _atom_sites.fract_transf_matrix[1][2] 0.009485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 801 801 MTN MTN . C 3 AZI A 1 165 165 AZI AZI . D 4 CL A 1 166 166 CL CL . E 4 CL A 1 167 167 CL CL . F 4 CL A 1 168 168 CL CL . G 5 HED A 1 169 169 HED HED . H 6 HOH A 1 177 177 HOH HOH . H 6 HOH A 2 178 178 HOH HOH . H 6 HOH A 3 179 179 HOH HOH . H 6 HOH A 4 180 180 HOH HOH . H 6 HOH A 5 181 181 HOH HOH . H 6 HOH A 6 182 182 HOH HOH . H 6 HOH A 7 183 183 HOH HOH . H 6 HOH A 8 184 184 HOH HOH . H 6 HOH A 9 185 185 HOH HOH . H 6 HOH A 10 186 186 HOH HOH . H 6 HOH A 11 187 187 HOH HOH . H 6 HOH A 12 188 188 HOH HOH . H 6 HOH A 13 189 189 HOH HOH . H 6 HOH A 14 190 190 HOH HOH . H 6 HOH A 15 191 191 HOH HOH . H 6 HOH A 16 192 192 HOH HOH . H 6 HOH A 17 193 193 HOH HOH . H 6 HOH A 18 194 194 HOH HOH . H 6 HOH A 19 195 195 HOH HOH . H 6 HOH A 20 197 197 HOH HOH . H 6 HOH A 21 198 198 HOH HOH . H 6 HOH A 22 199 199 HOH HOH . H 6 HOH A 23 200 200 HOH HOH . H 6 HOH A 24 201 201 HOH HOH . H 6 HOH A 25 202 202 HOH HOH . H 6 HOH A 26 203 203 HOH HOH . H 6 HOH A 27 204 204 HOH HOH . H 6 HOH A 28 205 205 HOH HOH . H 6 HOH A 29 206 206 HOH HOH . H 6 HOH A 30 207 207 HOH HOH . H 6 HOH A 31 208 208 HOH HOH . H 6 HOH A 32 209 209 HOH HOH . H 6 HOH A 33 210 210 HOH HOH . H 6 HOH A 34 211 211 HOH HOH . H 6 HOH A 35 212 212 HOH HOH . H 6 HOH A 36 213 213 HOH HOH . H 6 HOH A 37 215 215 HOH HOH . H 6 HOH A 38 216 216 HOH HOH . H 6 HOH A 39 218 218 HOH HOH . H 6 HOH A 40 219 219 HOH HOH . H 6 HOH A 41 220 220 HOH HOH . H 6 HOH A 42 221 221 HOH HOH . H 6 HOH A 43 222 222 HOH HOH . H 6 HOH A 44 223 223 HOH HOH . H 6 HOH A 45 224 224 HOH HOH . H 6 HOH A 46 225 225 HOH HOH . H 6 HOH A 47 226 226 HOH HOH . H 6 HOH A 48 227 227 HOH HOH . H 6 HOH A 49 228 228 HOH HOH . H 6 HOH A 50 229 229 HOH HOH . H 6 HOH A 51 230 230 HOH HOH . H 6 HOH A 52 231 231 HOH HOH . H 6 HOH A 53 233 233 HOH HOH . H 6 HOH A 54 234 234 HOH HOH . H 6 HOH A 55 235 235 HOH HOH . H 6 HOH A 56 236 236 HOH HOH . H 6 HOH A 57 237 237 HOH HOH . H 6 HOH A 58 239 239 HOH HOH . H 6 HOH A 59 240 240 HOH HOH . H 6 HOH A 60 241 241 HOH HOH . H 6 HOH A 61 242 242 HOH HOH . H 6 HOH A 62 243 243 HOH HOH . H 6 HOH A 63 244 244 HOH HOH . H 6 HOH A 64 245 245 HOH HOH . H 6 HOH A 65 246 246 HOH HOH . H 6 HOH A 66 247 247 HOH HOH . H 6 HOH A 67 248 248 HOH HOH . H 6 HOH A 68 249 249 HOH HOH . H 6 HOH A 69 250 250 HOH HOH . H 6 HOH A 70 251 251 HOH HOH . H 6 HOH A 71 253 253 HOH HOH . H 6 HOH A 72 254 254 HOH HOH . H 6 HOH A 73 255 255 HOH HOH . H 6 HOH A 74 256 256 HOH HOH . H 6 HOH A 75 257 257 HOH HOH . H 6 HOH A 76 259 259 HOH HOH . H 6 HOH A 77 260 260 HOH HOH . H 6 HOH A 78 261 261 HOH HOH . H 6 HOH A 79 262 262 HOH HOH . H 6 HOH A 80 263 263 HOH HOH . H 6 HOH A 81 264 264 HOH HOH . H 6 HOH A 82 266 266 HOH HOH . H 6 HOH A 83 268 268 HOH HOH . H 6 HOH A 84 269 269 HOH HOH . H 6 HOH A 85 270 270 HOH HOH . H 6 HOH A 86 271 271 HOH HOH . H 6 HOH A 87 272 272 HOH HOH . H 6 HOH A 88 274 274 HOH HOH . H 6 HOH A 89 275 275 HOH HOH . H 6 HOH A 90 276 276 HOH HOH . H 6 HOH A 91 277 277 HOH HOH . H 6 HOH A 92 278 278 HOH HOH . H 6 HOH A 93 279 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . G 5 31.857 -1.277 15.344 1 43.62 ? C1 HED 169 A 1 HETATM 2 O O1 HED . . . G 5 33.145 -1.059 15.896 1 44.72 ? O1 HED 169 A 1 HETATM 3 C C2 HED . . . G 5 31.91 -1.011 13.853 1 33.6 ? C2 HED 169 A 1 HETATM 4 S S3 HED . . . G 5 33.492 -1.58 13.187 1 49.82 ? S3 HED 169 A 1 HETATM 5 S S4 HED . . . G 5 33.756 -0.599 11.432 1 53.2 ? S4 HED 169 A 1 HETATM 6 C C5 HED . . . G 5 32.619 -1.479 10.323 1 38.23 ? C5 HED 169 A 1 HETATM 7 C C6 HED . . . G 5 33.271 -2.707 9.706 1 35.66 ? C6 HED 169 A 1 HETATM 8 O O6 HED . . . G 5 34.587 -2.375 9.309 1 48.36 ? O6 HED 169 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #