data_3G3V # _model_server_result.job_id vXDVsDzltC25SRMYdD37Fg _model_server_result.datetime_utc '2024-11-22 11:13:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 3G3V # _exptl.entry_id 3G3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G3V _cell.length_a 60.868 _cell.length_b 60.868 _cell.length_c 96.818 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 131 A CYS 131 1_555 B S1 MTN . A MTN 801 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.001 ? covale ? covale2 A SG CYS 131 A CYS 131 1_555 B S1 MTN . A MTN 801 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 256 n n N1 C1 MTN sing 257 n n N1 C5 MTN sing 258 n n C1 C2 MTN sing 259 n n C1 C8 MTN sing 260 n n C1 C9 MTN sing 261 n n C2 C3 MTN doub 262 n n C2 H2 MTN sing 263 n n C3 C4 MTN sing 264 n n C3 C5 MTN sing 265 n n C4 S1 MTN sing 266 n n C4 H41 MTN sing 267 n n C4 H42 MTN sing 268 n n C5 C6 MTN sing 269 n n C5 C7 MTN sing 270 n n C6 H61 MTN sing 271 n n C6 H62 MTN sing 272 n n C6 H63 MTN sing 273 n n C7 H71 MTN sing 274 n n C7 H72 MTN sing 275 n n C7 H73 MTN sing 276 n n C8 H81 MTN sing 277 n n C8 H82 MTN sing 278 n n C8 H83 MTN sing 279 n n C9 H91 MTN sing 280 n n C9 H92 MTN sing 281 n n C9 H93 MTN sing 282 n n S1 S2 MTN sing 283 n n S2 O2 MTN doub 284 n n S2 O3 MTN doub 285 n n S2 C12 MTN sing 286 n n C12 H4 MTN sing 287 n n C12 H1 MTN sing 288 n n C12 H3 MTN sing 289 n n # _atom_sites.entry_id 3G3V _atom_sites.fract_transf_matrix[1][1] 0.016429 _atom_sites.fract_transf_matrix[1][2] 0.009485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 801 801 MTN MTN . C 3 AZI A 1 165 165 AZI AZI . D 4 CL A 1 166 166 CL CL . E 4 CL A 1 167 167 CL CL . F 4 CL A 1 168 168 CL CL . G 5 HED A 1 169 169 HED HED . H 6 HOH A 1 177 177 HOH HOH . H 6 HOH A 2 178 178 HOH HOH . H 6 HOH A 3 179 179 HOH HOH . H 6 HOH A 4 180 180 HOH HOH . H 6 HOH A 5 181 181 HOH HOH . H 6 HOH A 6 182 182 HOH HOH . H 6 HOH A 7 183 183 HOH HOH . H 6 HOH A 8 184 184 HOH HOH . H 6 HOH A 9 185 185 HOH HOH . H 6 HOH A 10 186 186 HOH HOH . H 6 HOH A 11 187 187 HOH HOH . H 6 HOH A 12 188 188 HOH HOH . H 6 HOH A 13 189 189 HOH HOH . H 6 HOH A 14 190 190 HOH HOH . H 6 HOH A 15 191 191 HOH HOH . H 6 HOH A 16 192 192 HOH HOH . H 6 HOH A 17 193 193 HOH HOH . H 6 HOH A 18 194 194 HOH HOH . H 6 HOH A 19 195 195 HOH HOH . H 6 HOH A 20 197 197 HOH HOH . H 6 HOH A 21 198 198 HOH HOH . H 6 HOH A 22 199 199 HOH HOH . H 6 HOH A 23 200 200 HOH HOH . H 6 HOH A 24 201 201 HOH HOH . H 6 HOH A 25 202 202 HOH HOH . H 6 HOH A 26 203 203 HOH HOH . H 6 HOH A 27 204 204 HOH HOH . H 6 HOH A 28 205 205 HOH HOH . H 6 HOH A 29 206 206 HOH HOH . H 6 HOH A 30 207 207 HOH HOH . H 6 HOH A 31 208 208 HOH HOH . H 6 HOH A 32 209 209 HOH HOH . H 6 HOH A 33 210 210 HOH HOH . H 6 HOH A 34 211 211 HOH HOH . H 6 HOH A 35 212 212 HOH HOH . H 6 HOH A 36 213 213 HOH HOH . H 6 HOH A 37 215 215 HOH HOH . H 6 HOH A 38 216 216 HOH HOH . H 6 HOH A 39 218 218 HOH HOH . H 6 HOH A 40 219 219 HOH HOH . H 6 HOH A 41 220 220 HOH HOH . H 6 HOH A 42 221 221 HOH HOH . H 6 HOH A 43 222 222 HOH HOH . H 6 HOH A 44 223 223 HOH HOH . H 6 HOH A 45 224 224 HOH HOH . H 6 HOH A 46 225 225 HOH HOH . H 6 HOH A 47 226 226 HOH HOH . H 6 HOH A 48 227 227 HOH HOH . H 6 HOH A 49 228 228 HOH HOH . H 6 HOH A 50 229 229 HOH HOH . H 6 HOH A 51 230 230 HOH HOH . H 6 HOH A 52 231 231 HOH HOH . H 6 HOH A 53 233 233 HOH HOH . H 6 HOH A 54 234 234 HOH HOH . H 6 HOH A 55 235 235 HOH HOH . H 6 HOH A 56 236 236 HOH HOH . H 6 HOH A 57 237 237 HOH HOH . H 6 HOH A 58 239 239 HOH HOH . H 6 HOH A 59 240 240 HOH HOH . H 6 HOH A 60 241 241 HOH HOH . H 6 HOH A 61 242 242 HOH HOH . H 6 HOH A 62 243 243 HOH HOH . H 6 HOH A 63 244 244 HOH HOH . H 6 HOH A 64 245 245 HOH HOH . H 6 HOH A 65 246 246 HOH HOH . H 6 HOH A 66 247 247 HOH HOH . H 6 HOH A 67 248 248 HOH HOH . H 6 HOH A 68 249 249 HOH HOH . H 6 HOH A 69 250 250 HOH HOH . H 6 HOH A 70 251 251 HOH HOH . H 6 HOH A 71 253 253 HOH HOH . H 6 HOH A 72 254 254 HOH HOH . H 6 HOH A 73 255 255 HOH HOH . H 6 HOH A 74 256 256 HOH HOH . H 6 HOH A 75 257 257 HOH HOH . H 6 HOH A 76 259 259 HOH HOH . H 6 HOH A 77 260 260 HOH HOH . H 6 HOH A 78 261 261 HOH HOH . H 6 HOH A 79 262 262 HOH HOH . H 6 HOH A 80 263 263 HOH HOH . H 6 HOH A 81 264 264 HOH HOH . H 6 HOH A 82 266 266 HOH HOH . H 6 HOH A 83 268 268 HOH HOH . H 6 HOH A 84 269 269 HOH HOH . H 6 HOH A 85 270 270 HOH HOH . H 6 HOH A 86 271 271 HOH HOH . H 6 HOH A 87 272 272 HOH HOH . H 6 HOH A 88 274 274 HOH HOH . H 6 HOH A 89 275 275 HOH HOH . H 6 HOH A 90 276 276 HOH HOH . H 6 HOH A 91 277 277 HOH HOH . H 6 HOH A 92 278 278 HOH HOH . H 6 HOH A 93 279 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . B 2 38.428 11.382 -16.249 0.2 53.92 ? O1 MTN 801 A 1 HETATM 2 O O1 MTN . B . B 2 35.471 8.194 -17.913 0.2 50.99 ? O1 MTN 801 A 1 HETATM 3 N N1 MTN . A . B 2 37.171 11.361 -16.067 0.2 70.64 ? N1 MTN 801 A 1 HETATM 4 N N1 MTN . B . B 2 34.938 8.76 -16.909 0.2 55.83 ? N1 MTN 801 A 1 HETATM 5 C C1 MTN . A . B 2 36.229 12.088 -16.908 0.2 52.77 ? C1 MTN 801 A 1 HETATM 6 C C1 MTN . B . B 2 33.505 8.99 -16.79 0.2 53.05 ? C1 MTN 801 A 1 HETATM 7 C C2 MTN . A . B 2 34.904 11.777 -16.251 0.2 45.83 ? C2 MTN 801 A 1 HETATM 8 C C2 MTN . B . B 2 33.402 9.669 -15.444 0.2 51.22 ? C2 MTN 801 A 1 HETATM 9 C C3 MTN . A . B 2 35.082 10.935 -15.224 0.2 50.69 ? C3 MTN 801 A 1 HETATM 10 C C3 MTN . B . B 2 34.626 9.893 -14.943 0.2 48.31 ? C3 MTN 801 A 1 HETATM 11 C C4 MTN . A . B 2 33.944 10.373 -14.4 0.2 53.7 ? C4 MTN 801 A 1 HETATM 12 C C4 MTN . B . B 2 34.872 10.727 -13.703 0.2 60.09 ? C4 MTN 801 A 1 HETATM 13 S S1 MTN . A . B 2 33.615 11.336 -12.956 0.5 41.97 ? S1 MTN 801 A 1 HETATM 14 S S1 MTN . B . B 2 34.963 9.753 -12.234 0.5 53.97 ? S1 MTN 801 A 1 HETATM 15 C C5 MTN . A . B 2 36.533 10.607 -15.002 0.2 47.55 ? C5 MTN 801 A 1 HETATM 16 C C5 MTN . B . B 2 35.7 9.247 -15.771 0.2 48.25 ? C5 MTN 801 A 1 HETATM 17 C C6 MTN . A . B 2 36.775 9.111 -15.125 0.2 52.58 ? C6 MTN 801 A 1 HETATM 18 C C6 MTN . B . B 2 36.377 8.126 -14.999 0.2 62.2 ? C6 MTN 801 A 1 HETATM 19 C C7 MTN . A . B 2 36.976 11.107 -13.632 0.2 49.24 ? C7 MTN 801 A 1 HETATM 20 C C7 MTN . B . B 2 36.716 10.299 -16.195 0.2 54.28 ? C7 MTN 801 A 1 HETATM 21 C C8 MTN . A . B 2 36.477 13.591 -16.888 0.2 28.89 ? C8 MTN 801 A 1 HETATM 22 C C8 MTN . B . B 2 33.001 9.932 -17.878 0.2 44.39 ? C8 MTN 801 A 1 HETATM 23 C C9 MTN . A . B 2 36.235 11.553 -18.335 0.2 53.06 ? C9 MTN 801 A 1 HETATM 24 C C9 MTN . B . B 2 32.71 7.689 -16.783 0.2 33.19 ? C9 MTN 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #