data_3G3W # _model_server_result.job_id sn_9yqItd9uo70DIazR_PA _model_server_result.datetime_utc '2024-12-14 08:15:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 3G3W # _exptl.entry_id 3G3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G3W _cell.length_a 60.657 _cell.length_b 60.657 _cell.length_c 96.448 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 151 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 151 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id MTN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MTN _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.997 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 256 n n N1 C1 MTN sing 257 n n N1 C5 MTN sing 258 n n C1 C2 MTN sing 259 n n C1 C8 MTN sing 260 n n C1 C9 MTN sing 261 n n C2 C3 MTN doub 262 n n C2 H2 MTN sing 263 n n C3 C4 MTN sing 264 n n C3 C5 MTN sing 265 n n C4 S1 MTN sing 266 n n C4 H41 MTN sing 267 n n C4 H42 MTN sing 268 n n C5 C6 MTN sing 269 n n C5 C7 MTN sing 270 n n C6 H61 MTN sing 271 n n C6 H62 MTN sing 272 n n C6 H63 MTN sing 273 n n C7 H71 MTN sing 274 n n C7 H72 MTN sing 275 n n C7 H73 MTN sing 276 n n C8 H81 MTN sing 277 n n C8 H82 MTN sing 278 n n C8 H83 MTN sing 279 n n C9 H91 MTN sing 280 n n C9 H92 MTN sing 281 n n C9 H93 MTN sing 282 n n S1 S2 MTN sing 283 n n S2 O2 MTN doub 284 n n S2 O3 MTN doub 285 n n S2 C12 MTN sing 286 n n C12 H4 MTN sing 287 n n C12 H1 MTN sing 288 n n C12 H3 MTN sing 289 n n # _atom_sites.entry_id 3G3W _atom_sites.fract_transf_matrix[1][1] 0.016486 _atom_sites.fract_transf_matrix[1][2] 0.009518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 801 801 MTN MTN . C 3 HED A 1 165 165 HED HED . D 4 CL A 1 166 166 CL CL . E 5 AZI A 1 167 167 AZI AZI . F 6 HOH A 1 168 168 HOH HOH . F 6 HOH A 2 169 169 HOH HOH . F 6 HOH A 3 170 170 HOH HOH . F 6 HOH A 4 171 171 HOH HOH . F 6 HOH A 5 172 172 HOH HOH . F 6 HOH A 6 173 173 HOH HOH . F 6 HOH A 7 174 174 HOH HOH . F 6 HOH A 8 175 175 HOH HOH . F 6 HOH A 9 176 176 HOH HOH . F 6 HOH A 10 177 177 HOH HOH . F 6 HOH A 11 178 178 HOH HOH . F 6 HOH A 12 179 179 HOH HOH . F 6 HOH A 13 180 180 HOH HOH . F 6 HOH A 14 181 181 HOH HOH . F 6 HOH A 15 182 182 HOH HOH . F 6 HOH A 16 183 183 HOH HOH . F 6 HOH A 17 184 184 HOH HOH . F 6 HOH A 18 185 185 HOH HOH . F 6 HOH A 19 186 186 HOH HOH . F 6 HOH A 20 187 187 HOH HOH . F 6 HOH A 21 188 188 HOH HOH . F 6 HOH A 22 189 189 HOH HOH . F 6 HOH A 23 190 190 HOH HOH . F 6 HOH A 24 191 191 HOH HOH . F 6 HOH A 25 192 192 HOH HOH . F 6 HOH A 26 193 193 HOH HOH . F 6 HOH A 27 194 194 HOH HOH . F 6 HOH A 28 195 195 HOH HOH . F 6 HOH A 29 196 196 HOH HOH . F 6 HOH A 30 197 197 HOH HOH . F 6 HOH A 31 198 198 HOH HOH . F 6 HOH A 32 199 199 HOH HOH . F 6 HOH A 33 200 200 HOH HOH . F 6 HOH A 34 201 201 HOH HOH . F 6 HOH A 35 202 202 HOH HOH . F 6 HOH A 36 203 203 HOH HOH . F 6 HOH A 37 204 204 HOH HOH . F 6 HOH A 38 205 205 HOH HOH . F 6 HOH A 39 206 206 HOH HOH . F 6 HOH A 40 207 207 HOH HOH . F 6 HOH A 41 208 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . B 2 17.922 -1.462 -11.221 0.2 54.12 ? O1 MTN 801 A 1 HETATM 2 N N1 MTN . . . B 2 18.415 -1.954 -10.16 0.2 63.29 ? N1 MTN 801 A 1 HETATM 3 C C1 MTN . . . B 2 19.778 -1.691 -9.717 0.2 65.98 ? C1 MTN 801 A 1 HETATM 4 C C2 MTN . . . B 2 19.859 -2.483 -8.434 0.2 49.25 ? C2 MTN 801 A 1 HETATM 5 C C3 MTN . . . B 2 18.71 -3.138 -8.227 0.2 61.13 ? C3 MTN 801 A 1 HETATM 6 C C4 MTN . . . B 2 18.482 -4.077 -7.069 0.2 50.73 ? C4 MTN 801 A 1 HETATM 7 S S1 MTN . . . B 2 20.033 -4.785 -6.628 0.7 39.8 ? S1 MTN 801 A 1 HETATM 8 C C5 MTN . . . B 2 17.678 -2.833 -9.272 0.2 56.04 ? C5 MTN 801 A 1 HETATM 9 C C6 MTN . . . B 2 16.47 -2.157 -8.645 0.2 41.26 ? C6 MTN 801 A 1 HETATM 10 C C7 MTN . . . B 2 17.275 -4.126 -9.971 0.2 56.28 ? C7 MTN 801 A 1 HETATM 11 C C8 MTN . . . B 2 20.804 -2.222 -10.711 0.2 69.81 ? C8 MTN 801 A 1 HETATM 12 C C9 MTN . . . B 2 20.006 -0.212 -9.429 0.2 60.55 ? C9 MTN 801 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #