data_3G3Y # _model_server_result.job_id oTcfXEG1cC5eBuUpLTn6nQ _model_server_result.datetime_utc '2025-07-19 18:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":269}' # _entry.id 3G3Y # _exptl.entry_id 3G3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G3Y _cell.length_a 80.487 _cell.length_b 80.487 _cell.length_c 79.749 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DA 4 I DA 2 1_555 C P UPS 5 I UPS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale2 C O3' UPS 5 I UPS 3 1_555 C P DT 6 I DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? metalc ? metalc1 A OD1 ASN 12 A ASN 12 1_555 D MG MG . A MG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OE2 GLU 38 A GLU 38 1_555 D MG MG . A MG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc3 A OE1 GLU 38 A GLU 38 1_555 D MG MG . A MG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc4 D MG MG . A MG 266 1_555 J O HOH . A HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 D MG MG . A MG 266 1_555 J O HOH . A HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc6 B OD1 ASN 12 B ASN 12 1_555 H MG MG . B MG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc7 B OE2 GLU 38 B GLU 38 1_555 H MG MG . B MG 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 3G3Y _atom_sites.fract_transf_matrix[1][1] 0.012424 _atom_sites.fract_transf_matrix[1][2] 0.007173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 266 1 MG MG . E 4 GOL A 1 267 1 GOL GOL . F 4 GOL A 1 268 5 GOL GOL . G 4 GOL A 1 269 1 GOL GOL . H 3 MG B 1 266 1 MG MG . I 4 GOL B 1 267 1 GOL GOL . J 5 HOH A 1 270 1 HOH HOH . J 5 HOH A 2 271 8 HOH HOH . J 5 HOH A 3 272 12 HOH HOH . J 5 HOH A 4 273 15 HOH HOH . J 5 HOH A 5 274 16 HOH HOH . J 5 HOH A 6 275 22 HOH HOH . J 5 HOH A 7 276 24 HOH HOH . J 5 HOH A 8 277 25 HOH HOH . J 5 HOH A 9 278 27 HOH HOH . J 5 HOH A 10 279 28 HOH HOH . J 5 HOH A 11 280 30 HOH HOH . J 5 HOH A 12 281 34 HOH HOH . J 5 HOH A 13 282 35 HOH HOH . J 5 HOH A 14 283 37 HOH HOH . J 5 HOH A 15 284 38 HOH HOH . J 5 HOH A 16 285 40 HOH HOH . J 5 HOH A 17 286 41 HOH HOH . J 5 HOH A 18 287 42 HOH HOH . J 5 HOH A 19 288 43 HOH HOH . J 5 HOH A 20 289 52 HOH HOH . J 5 HOH A 21 290 53 HOH HOH . J 5 HOH A 22 291 68 HOH HOH . J 5 HOH A 23 292 69 HOH HOH . J 5 HOH A 24 293 2 HOH HOH . J 5 HOH A 25 294 4 HOH HOH . J 5 HOH A 26 295 7 HOH HOH . J 5 HOH A 27 296 10 HOH HOH . J 5 HOH A 28 297 14 HOH HOH . J 5 HOH A 29 298 15 HOH HOH . J 5 HOH A 30 299 1 HOH HOH . J 5 HOH A 31 300 2 HOH HOH . J 5 HOH A 32 301 3 HOH HOH . J 5 HOH A 33 302 3 HOH HOH . J 5 HOH A 34 303 4 HOH HOH . J 5 HOH A 35 304 5 HOH HOH . K 5 HOH B 1 268 6 HOH HOH . K 5 HOH B 2 269 9 HOH HOH . K 5 HOH B 3 270 10 HOH HOH . K 5 HOH B 4 271 11 HOH HOH . K 5 HOH B 5 272 17 HOH HOH . K 5 HOH B 6 273 19 HOH HOH . K 5 HOH B 7 274 21 HOH HOH . K 5 HOH B 8 275 26 HOH HOH . K 5 HOH B 9 276 29 HOH HOH . K 5 HOH B 10 277 32 HOH HOH . K 5 HOH B 11 278 39 HOH HOH . K 5 HOH B 12 279 44 HOH HOH . K 5 HOH B 13 280 47 HOH HOH . K 5 HOH B 14 281 57 HOH HOH . K 5 HOH B 15 282 58 HOH HOH . K 5 HOH B 16 283 9 HOH HOH . K 5 HOH B 17 284 1 HOH HOH . K 5 HOH B 18 285 6 HOH HOH . K 5 HOH B 19 286 7 HOH HOH . L 5 HOH I 1 45 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 30.642 -23.237 -22.06 1 51.77 ? C1 GOL 269 A 1 HETATM 2 O O1 GOL . . . G 4 31.46 -22.24 -22.626 1 50.06 ? O1 GOL 269 A 1 HETATM 3 C C2 GOL . . . G 4 31.547 -24.343 -21.527 1 51.99 ? C2 GOL 269 A 1 HETATM 4 O O2 GOL . . . G 4 31.274 -24.629 -20.174 1 52.02 ? O2 GOL 269 A 1 HETATM 5 C C3 GOL . . . G 4 31.316 -25.603 -22.334 1 52.09 ? C3 GOL 269 A 1 HETATM 6 O O3 GOL . . . G 4 31.855 -26.707 -21.633 1 51.72 ? O3 GOL 269 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1062 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #